BGIOSGA036199

From RiceWiki
Revision as of 18:26, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA036199

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA036199, complete gene.

LocusTag

OsI_38317

Ensembl Transcript ID

BGIOSGA036199-TA

Ensembl Protein ID

BGIOSGA036199-PA

Length

5881

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:13958730..13964610

Sequence Coding Region

13964467..13964610,13962802..13962900,13962634..13962687,13962301..13962474,13962097..13962238
,13961549..13961639,13961294..13961458,13960968..13961087,13960791..13960866
,13960535..13960706,13959539..13960449,13959008..13959198,13958730..13958913

Genome Context

<gbrowseImage1> name=IndicaChromosome12:13958730..13964610 source=RiceIndica12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome12:13958730..13964610 source=RiceIndica12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGTCCATGTCCATGTTCGTGTCCAGCCAAAGCAAGATTCTCCGGGCAGCATGGAAATCTCAGCCCCCACGAAAAGCACAGCAGCAGCAGGCAGCAGCCGAGTCTCCTGAAGCCACCAATCACATCGCTCCAAGCACCGCCTCGGTGGAGGCATCGACGAACCAGGTCGCCGAGCAGCAGGGGGCTCCGCTCTACAATCTGCCATGGAAGATCCCGTGCAAGGTCATGAACGTCGAGCTCAAGGCTGAGCCTGATACGGATGAGGTGTATGCGCAGCTCACCCTGCTTCCGGAGAAGTGGTACGGGAATGTGTCCAAAGACAAGGTGGAGGAGGAAGAGGTGGTGCCACCAGCTGCAACTGAGCGGCCCCGGGTGCACTCCTTCTGCAAGACGCTCACTGCGTCGGACACGAGCACGCATGGTGGCTTCTCGGTGCTGCGCCGGCACGCGGATGAGTGCCTCCCACCACTGTACAGCTTTTTTGATAGGCTAATTGTAGCAATGCCTTTGACGTCGCTGCTTGATCAGGATATGAGTCAGCATCCCCCAACACAAGAGCTGGTGGCCAAGGATCTTCATGGGGTTGAGTGGCGCTTCCGTCACATCTTCCGAGGTCAGCCACGAAGACACCTTCTCCAGAGTGGTTGGAGTGTTTTTGTGAGTGCCAAACGCCTTGTTGCTGGAGATGCCTTCATATTTCTCAGAGGTGAGAATGGGGAACTACGAGTTGGAGTTCGGCGTGCAATGAGACAACAAGCTAATATTCCATCTTCGGTCATATCAAGCCACAGTATGCATCTTGGTGTTCTTGCAACTGCATGGCATGCAGTGAACACTGGAACCATGTTCACTGTGTACTACAAGCCAAGGACTAGTCCATCTGAATTTGTGGTACCACGTGATCTGTACAAGGAATCTCTGAAACGAAATCATTCAATAGGGATGAGATTCAAGATGACATTTGAAGGCGAAGAGGCTGCAGAGCAAAGATTCACTGGCACAATTGTTGGAGTAGGTGATTCTGACCCATCTGGTTGGGCTGACTCAAAATGGCGTTCCCTTAAGGTGCGATGGGATGAAGCTGCTTCTGTTCCTCGTCCTGATAGGGTTTCTCCTTGGCAAATAGAACCTGCTAACAGCCCTTCCCCTGTCAACCCTCTTCCAGCACCCCGAACCAAGCGGGCTCGTCCAAATGTTTTAGCTTCCTCACCTGACTTGTCTGCTGTAAACAAAGAAGTTGCTTCAAAAGTCATGGCAAACTCGCAGCAAAATGGTCTTCCAAGGGCCTTCCACAGTCAAGAAAACATGAATTTGAGAAGTCGTTTTGGTGATAGCAATGAGCTAAATACTTCCCAAAAGCTTACCATGTGGTCTTCAGGAAGCAATCAAGAGAAAAATAATGTTTCTGTCCAGAGGGAGCTAGGTTCACAGAGTTGGATGCAGATGAGAAGCCCTGATGGTTCCTCTGAGATATTATCTGGATTTCAACCACTGAAAGATACGCGGAACCCTCTGAGTTCATTTCCTAGTCAGATATCTGGAAACCGTTCAAATACGTGGAACACAATCAATGTTCATTATCCCGACCAAAATGCCAATCATAATATGTACCCTGGCACATGGTCTCTTATGCCTCCAAACACTGGTTTTGGTGTGAATCAGCAGAACTACCTAATGACGCCTGACATCACACTCCCTCAAAGGTCTCTTAATGCCAAGTTTGGTGGGAATGGAGCATTCACTTCGCTTCGGGCCCATGGCATTGATCAGCGCTCCTCTGGTTGGCTTGGGCATATTGAGCCAAGTTCTCACATTGATGATGCCTCATCGAGTCTTATCAAGCCACAGCCTTTGGTTATTGATCACAATGTTCAGAAAGCTAAAGGCTCTTCATGCATGCTATTTGGGATTTCTCTTGACAGCCCTGCAAAACCTGAACTATTGATATCCCCACCAAGTGTTGCATTTGATGGGAAGCTCCAACAGGATGCACTTGAAGAGGATGAATGCTCTGATCCTTCCAAGACTGTGAAGCCACTTGATGGAGCTCAGCACGATTCTGCTACAGAGAAACATCAGTCATGTCCAGATGGTACCAAAAACATTCAGAGTAAACAGCAAAATGGTTCCTCCCGAAGTTGCAAGAAGGTCCACAAGCAAGGAATCGCACTCGGGAGGTCAATAGATCTTACAAAGTTCACTTGCTATGATGAGTTGATTGCTGAACTGGACCAGATGTTTGACTTCAATGGTGAGCTGAACAGTTCAAGCAAGAACTGGATGGTCGTTTACACTGATAATGAGGGTGACATGATGTTGGTTGGTGATGATCCTTGGAATGAATTCTGCAACATGGTTCATAAAATCTTCATCTACACGAGGGAGGAGGTCCAGAAGATGAATCCGGGTGCCCTAAACTCAAGGTCAGAGGATAGCCGGTCTACTTCCGTGGAACGAGGGCTAGTTGGCGAAGGGCTCCGAGGTGGTCTATCCACCCCATCACTGAATTCTGAGAACTGCTAA</cdnaseq>

Protein Sequence

<aaseq>MSMSMFVSSQSKILRAAWKSQPPRKAQQQQAAAESPEATNHIAPSTASVEASTNQVAEQQGAPLYNLPWKIPCKVMNVELKAEPDTDEVYAQLTLLPEKWYGNVSKDKVEEEEVVPPAATERPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLYSFFDRLIVAMPLTSLLDQDMSQHPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQANIPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTSPSEFVVPRDLYKESLKRNHSIGMRFKMTFEGEEAAEQRFTGTIVGVGDSDPSGWADSKWRSLKVRWDEAASVPRPDRVSPWQIEPANSPSPVNPLPAPRTKRARPNVLASSPDLSAVNKEVASKVMANSQQNGLPRAFHSQENMNLRSRFGDSNELNTSQKLTMWSSGSNQEKNNVSVQRELGSQSWMQMRSPDGSSEILSGFQPLKDTRNPLSSFPSQISGNRSNTWNTINVHYPDQNANHNMYPGTWSLMPPNTGFGVNQQNYLMTPDITLPQRSLNAKFGGNGAFTSLRAHGIDQRSSGWLGHIEPSSHIDDASSSLIKPQPLVIDHNVQKAKGSSCMLFGISLDSPAKPELLISPPSVAFDGKLQQDALEEDECSDPSKTVKPLDGAQHDSATEKHQSCPDGTKNIQSKQQNGSSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNPGALNSRSEDSRSTSVERGLVGEGLRGGLSTPSLNSENC</aaseq>

Gene Sequence

<dnaseqindica>1..144#1711..1809#1924..1977#2137..2310#2373..2514#2972..3062#3153..3317#3524..3643#3745..3820#3905..4076#4162..5072#5413..5603#5698..5881#ATGTCCATGTCCATGTTCGTGTCCAGCCAAAGCAAGATTCTCCGGGCAGCATGGAAATCTCAGCCCCCACGAAAAGCACAGCAGCAGCAGGCAGCAGCCGAGTCTCCTGAAGCCACCAATCACATCGCTCCAAGCACCGCCTCGGTCCACCATAGCCCACACTATCTTACTCCTAATCCCCTCCATTATCTTAATGTATTTCCTGCAACAAGGCACAGCCACCTCCTCGGACCAAAGCCACCAAACCAAAGCTTCTTCTCCTCCCTTTAGAGCAAGTTTATAGCATAGCCAACTTTTGACTTTAAATCATCTATAATTAATTTAACAACCAAGTTAGCTATAAACATATACTACACAAGTATAATATCTAATCCCACATATCATATACATATTGCATCTTGTAGTCTGTGTTGTAGCTGACTATATATCTGTAGCCCCGCTATTCTTATCTCTCCTCATTTATCTTCTCGATATGTGTTTATGGTCTGCTATTATACCAGCTCTTATTTCATTTCATGTGCACGTTTTCAAAACTGTTAAACGTTATAACTTTTGAGAAAAAAGTCATAAGAAAGTTGATTTTAAGAATTATATTAATTTACTTTATAAGTTATGTTATAGCTCCAATAATATTTAATTGGTTAAACGGTAATGAGTAACCAAATTTCCGTGCACGAAAGAGGAGTTCCGAAACTTCCAACCACAGCTATCAAACACATAGCTATTAATAGTAACACGAAATTCCAAACAAAAATAAAATAATTTGGTACCATATCTATCGCATGGTTTATCACGGACGAGGTTAATACGAAAACCACGCGGTTATCGCGAAATATATCGTGGTCTTAAAAACTATAAATGTTACCACACATAATATAACCATGCGGTTTCGTGAACGACTTTGATTGTTGGGGGTGAGACAGGCCCAGCCCAAGTCAAAGCCCAAGCCCAGCCCAACCAGCGGTGACCTCACCGCCCTCCCTACCCGAACCCAAAGCCCAAAGACGACCGCCCCGAGGCCGGTGCTGACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATCCCGAATTGCCGAGTTTTTCGGGGGTTTTGGCGCGGGTTCATGCCGCTCCTCATCTCGATCTGGGGAATTCGGGTGCTTCCAGCTTCGAGCTGCTCTTCGATTTGAAAATTTCTTGATCCTGGTTCGTCAAACACGTCGCCTTTGTGCTGAATTTTCGATTTTCCTCGTCTCCCATGATTTTCCTCGATGGGGGAAGGGTTTGGGTTTTCCCAATGTGAGCGCCATTGCCACCTCGGTCTTGCGAAATCCGCGGATTTGGGGCGGAAAATTCTGTGCTCCCCCTGTGACCGTGGACGAATTCTAGGTTTTTTTAGTGCTTTTTTTACTACTGGTTACTACTACTACTGCGGGGGTGAGTTCATTTGACCTGGGAGATTTGGTCTTTCTTTAGTGCCTCCAATGGCATGAGTACCTTTATGTTTTTTTTAATCCCAAAGTTTGGGGCTTTAATAATTTTTTAACCGCGACTCCGGGGGAGAGAGATGCGCAATGATGTTCTTGCCTTGCCTTTGTGATTTGGAGGAGAGACCTGATTCTTTTCTGCTGCTGCTGCTTTCTTCTGTTCTGTTCCAGGTGGAGGCATCGACGAACCAGGTCGCCGAGCAGCAGGGGGCTCCGCTCTACAATCTGCCATGGAAGATCCCGTGCAAGGTCATGAACGTCGAGCTCAAGGTGTTCATCCTGGCTGCATTTCTTACCCCAGTAGCTCCTTTGCTGCTATTTTTTTTTTACCATTTTTGTTAGGGGGTATATGAGGGGTGTAATACTTGTTTCATGTTTGGATAGGCTGAGCCTGATACGGATGAGGTGTATGCGCAGCTCACCCTGCTTCCGGAGAAGGTGCGTGTGAGGCGTTTTCGCTTGCGTTTTCGGTGTAGAATTGGGGTCTTGAACGCTGATAGCTTGTGTTTTTCTTTGTTGATTTACAGCAGCAGGATGGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGAGTGGTACGGGAATGTGTCCAAAGACAAGGTGGAGGAGGAAGAGGTGGTGCCACCAGCTGCAACTGAGCGGCCCCGGGTGCACTCCTTCTGCAAGACGCTCACTGCGTCGGACACGAGCACGCATGGTGGCTTCTCGGTGCTGCGCCGGCACGCGGATGAGTGCCTCCCACCACTGGTTAGGCCCTTGTAACCTTTGACTTGATGCTGGTTACGTTGTTGTCTCTGTTGTTGGTCCAGTACAGCTTTTTTGATAGGCTAATTGTAGCAATGCCTTTGACGTCGCTGCTTGATCAGGATATGAGTCAGCATCCCCCAACACAAGAGCTGGTGGCCAAGGATCTTCATGGGGTTGAGTGGCGCTTCCGTCACATCTTCCGAGGTGATACTTCATCCTCCTTGTAATGGATTTGTGCCAAAAGAATGTATCCAGCTCTTTCATGTTTGTTTCCTCAGTCTCCATGACATGAATTCCCAGCCTTTACTTGTTAGTATAATGCAATACAGACCATTTTTGTGTCTTGTGGACCCATTTACTTTGATCTTAGATGCATAATCTGATGTGGCACGTATAAAAATTAATTCGGTTCAATGATATGGACCATCTGTCTGCAAATATTTTGTGCATTTAGGTTTCTTTTGGTATGGACCTGCCTTTGATACTTAGTGCAAAATGATGGCTATCTATCAGACAGTTGTTCATTTGCGTGCTTAGCTTTATTTGTTAAGGCTCCCCTGCTCCATTGTCCTCCGTGGTGACATTGCAGCTTGCTTAATTTTAGTTGGTTGAGTATCTCTTGAAAGTTGAAACTAAGAAGTCTCTGGTTGCATGATATCAGGTCAGCCACGAAGACACCTTCTCCAGAGTGGTTGGAGTGTTTTTGTGAGTGCCAAACGCCTTGTTGCTGGAGATGCCTTCATATTTCTCAGGTGTGGAATTTTTTCATGCTGAACAATTCATGTTACTTGTTTTCTGCTCCAGTCTACTTAACCAAAGCTCCCCTTTTATTACATGAATAGAGGTGAGAATGGGGAACTACGAGTTGGAGTTCGGCGTGCAATGAGACAACAAGCTAATATTCCATCTTCGGTCATATCAAGCCACAGTATGCATCTTGGTGTTCTTGCAACTGCATGGCATGCAGTGAACACTGGAACCATGTTCACTGTGTACTACAAGCCAAGGTTTGTGATAACTGGCAAATTGTATACTTAGGCAATTCTGTTTTCAGTTTGGAAGCGATGCTTTTCCATTTGTCTCTCATTGTTGTAGTAGAATCCATAATCCTATACACGATAGAGCAAAGTTTTTAATTGAGTTAGTGACAGTGATATTGCGCCTGCCAATCAGTTGCATGTTTTTAATTGAGTTAGTGACACTGATATTGCAGGACTAGTCCATCTGAATTTGTGGTACCACGTGATCTGTACAAGGAATCTCTGAAACGAAATCATTCAATAGGGATGAGATTCAAGATGACATTTGAAGGCGAAGAGGCTGCAGAGCAAAGGTAAGCAGCTACAGTCGCTGCTTTTAAATGATGGGGAACATTTACTAATAGATAATTCCTCTTGGAGAGATGGTATAAAAGCTTTAATTTGTTTTTGCTAGATTCACTGGCACAATTGTTGGAGTAGGTGATTCTGACCCATCTGGTTGGGCTGACTCAAAATGGCGTTCCCTTAAGGTATTTTACCTTACGTATTATTCCTCACCTTATGGAATCAATTGAGTATACCAGTTTATTCTAAAGCTGTTCTTGTGAAAATAGGTGCGATGGGATGAAGCTGCTTCTGTTCCTCGTCCTGATAGGGTTTCTCCTTGGCAAATAGAACCTGCTAACAGCCCTTCCCCTGTCAACCCTCTTCCAGCACCCCGAACCAAGCGGGCTCGTCCAAATGTTTTAGCTTCCTCACCTGACTTGTCTGCTGTAAACAAAGAAGGTTTGCATTTGATCTTGTTATCGATCTGGAATACGTGTAGTCTTATTGCTACCATTGCTAATACATGTTTTGCCTTCTCATTCAGTTGCTTCAAAAGTCATGGCAAACTCGCAGCAAAATGGTCTTCCAAGGGCCTTCCACAGTCAAGAAAACATGAATTTGAGAAGTCGTTTTGGTGATAGCAATGAGCTAAATACTTCCCAAAAGCTTACCATGTGGTCTTCAGGAAGCAATCAAGAGAAAAATAATGTTTCTGTCCAGAGGGAGCTAGGTTCACAGAGTTGGATGCAGATGAGAAGCCCTGATGGTTCCTCTGAGATATTATCTGGATTTCAACCACTGAAAGATACGCGGAACCCTCTGAGTTCATTTCCTAGTCAGATATCTGGAAACCGTTCAAATACGTGGAACACAATCAATGTTCATTATCCCGACCAAAATGCCAATCATAATATGTACCCTGGCACATGGTCTCTTATGCCTCCAAACACTGGTTTTGGTGTGAATCAGCAGAACTACCTAATGACGCCTGACATCACACTCCCTCAAAGGTCTCTTAATGCCAAGTTTGGTGGGAATGGAGCATTCACTTCGCTTCGGGCCCATGGCATTGATCAGCGCTCCTCTGGTTGGCTTGGGCATATTGAGCCAAGTTCTCACATTGATGATGCCTCATCGAGTCTTATCAAGCCACAGCCTTTGGTTATTGATCACAATGTTCAGAAAGCTAAAGGCTCTTCATGCATGCTATTTGGGATTTCTCTTGACAGCCCTGCAAAACCTGAACTATTGATATCCCCACCAAGTGTTGCATTTGATGGGAAGCTCCAACAGGATGCACTTGAAGAGGATGAATGCTCTGATCCTTCCAAGACTGTGAAGCCACTTGATGGAGCTCAGCACGATTCTGCTACAGAGAAACATCAGTCATGTCCAGATGGTACCAAAAACATTCAGAGTAAACAGCAAAATGGTTCCTCCCGAAGTTGCAAGAAGGTTCGCCGCTCTTGCTTTATTGCATCTTTCCCTATGATTATGTTGTTTCGATGCATTAACTACTCTAAGCTGAAATCTCTAATGAACAATTTTCGAAGTATGCTCCAATTTATTTATCATGCTTGCTGGCTTGATTTTCAAGCTTTATTGCCTCTGCAACATTGTTGTTCCCTTTATTGATAAACTAAGTCTGTCACAGGTTACAGACACCTAAAGACCTGCTAGTTATTTTATCTTTCTACTGATAAAAGCTAAACCACATCATGCCTATGGATTTTACGTGTTTGGAATTGACTATCAATCTTTAAACTGTACTATCTTTTTTTAATAATATTTTTAGGTCCACAAGCAAGGAATCGCACTCGGGAGGTCAATAGATCTTACAAAGTTCACTTGCTATGATGAGTTGATTGCTGAACTGGACCAGATGTTTGACTTCAATGGTGAGCTGAACAGTTCAAGCAAGAACTGGATGGTCGTTTACACTGATAATGAGGGTGACATGATGTTGGTTGGTGATGATCCTTGGAAGTAAGTAGTACTGTCATAGAAACATTTCCTGTTGTTGAGTTGACTGATATGCATAACTAGACTTGATTTTAACTGGACCCATCTGTCTATGTAGTGAATTCTGCAACATGGTTCATAAAATCTTCATCTACACGAGGGAGGAGGTCCAGAAGATGAATCCGGGTGCCCTAAACTCAAGGTCAGAGGATAGCCGGTCTACTTCCGTGGAACGAGGGCTAGTTGGCGAAGGGCTCCGAGGTGGTCTATCCACCCCATCACTGAATTCTGAGAACTGCTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA036199