Os06g0581000

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Revision as of 09:24, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0581000| Description = Similar to Nitrate transporter NTL1| Version = NM_001064472.1 GI:115468675 GeneID:4341378| Length = 9230 bp| Defini...")
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Gene Name

Os06g0581000

Description

Similar to Nitrate transporter NTL1

Version

NM_001064472.1 GI:115468675 GeneID:4341378

Length

9230 bp

Definition

Oryza sativa Japonica Group Os06g0581000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:23532737..23541966

Sequence Coding Region

23532897..23534333,23539983..23540200,23541624..23541738,23541852..23541854

Expression

GEO Profiles:Os06g0581000

Genome Context

<gbrowseImage1> name=NC_008399:23532737..23541966 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:23532737..23541966 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggacggtgcggcggcgcgggaggcggagaggtgggaggggtacgtcgactggaggaaccggccggcggtgcgcggccggcacggcggcatgctcgccgcctccttcgttcttgtggtggaggtgctcgagaacctggcgttcctggcgaacgcgagcaacctggtgacctacctgatgaatttcatgcactactcgccgtcgcagtcggcgacgacggtgaccaacttcatgggcaccgccttcctcctcgccctccttggcggcttcctctccgacgccttcttcaccacctacgccatctacctcatcagcgcctttgtggaattcctggggctggtggtcctgacgatccaggcgaggacgccgtcgctgatgccgccggggtgcgccaaggttgccggcgcggcgtgcgagccagtgtcggggccgaagaaggcaatgctgttcgcggggctgtacgtgacggcgctgggcatcggcggcatcaagggctccctcccgtcgcacggcgccgagcagttcgacgagcacgcgccgcgggggcggaaggggcgctccaccttcttcaactacttcgtcttctgcctctccgtcggcgcgctcatcgccgtcacgttcgccgtctgggtggaggacaacaaggggtggcagtgggggttcggcatctccaccatcgccatcctgctctccatcccggtgttcgtcgccggctcgaggctgtaccgcaacaaggtgcccacggggagcccgctcaccaccatcgccaaggtcgtcctcgccgccgcgctcgctcgccgcggcggcgcgcagagcgccagcaacggcgctgtcatcgaccgcgcgcccagccccacggggagcacggacatgaaggagtactgcaagcccggcgacatctgcggcgtcgccgacggcgccgccgaggtggctaccgagccgtcgcaggagctggtgttcctgaaccgggcggtgcagcggcagccgcggtgcggggcgctgtcgtgcacggtgcaggaggtggaggacgtcaagatcgtgctcatggtgctcccgatcttcttctccaccatcatgctcaacagctgcctggcgcagctgtccaccttctccgtggagcaggcggcgacgatggacacccgcgtcggggggctcaaggtgccgccggcgtcgctgccggtgttcccggtcaccttcatcatcctcctcgccccggtctacgaccacatcatcatcccgttcgcgcgacgcgccacgggcacggagatggggatcacccacctgcagcgcatcggcacggggctcgtcctctccatcgtcgccatggccgtcgccgccgtggtggaggtgaagcgcaagaacgtggcgtccaacgccggaatgctcgacgcggcggcgccgctgcccatcaccttcttctggatcgcgttccagtacctgttcctggggtccgccgacctgttcacgctggcggggctgctcgagttcttcttcagcgaggcgccggcgaggatgcggtcgctggcgacgtcgctgtcgtgggcgtcgctggcgctggggtactacctgagctcggtgctggtgacggtggtgaacagcgcgacggggcgcggcgggcggcgggcgtggctgcagggggagaacctgaaccactaccacctggagaggttctactgggtgatgtgtgtgctcagcacgctcaactacctcttcttcttgttctgggccatccggtacaagtacagaaacgccggggtcatcaagggatga</cdnaseq>

Protein Sequence

<aaseq>MEDGAAAREAERWEGYVDWRNRPAVRGRHGGMLAASFVLVVEVL ENLAFLANASNLVTYLMNFMHYSPSQSATTVTNFMGTAFLLALLGGFLSDAFFTTYAI YLISAFVEFLGLVVLTIQARTPSLMPPGCAKVAGAACEPVSGPKKAMLFAGLYVTALG IGGIKGSLPSHGAEQFDEHAPRGRKGRSTFFNYFVFCLSVGALIAVTFAVWVEDNKGW QWGFGISTIAILLSIPVFVAGSRLYRNKVPTGSPLTTIAKVVLAAALARRGGAQSASN GAVIDRAPSPTGSTDMKEYCKPGDICGVADGAAEVATEPSQELVFLNRAVQRQPRCGA LSCTVQEVEDVKIVLMVLPIFFSTIMLNSCLAQLSTFSVEQAATMDTRVGGLKVPPAS LPVFPVTFIILLAPVYDHIIIPFARRATGTEMGITHLQRIGTGLVLSIVAMAVAAVVE VKRKNVASNAGMLDAAAPLPITFFWIAFQYLFLGSADLFTLAGLLEFFFSEAPARMRS LATSLSWASLALGYYLSSVLVTVVNSATGRGGRRAWLQGENLNHYHLERFYWVMCVLS TLNYLFFLFWAIRYKYRNAGVIKG</aaseq>

Gene Sequence

<dnaseqindica>7634..9070#1767..1984#229..343#113..115#ggcacagagactcctcgcctctgctccgctgctgcttccctgttcacccgccattagcgcgaccgagctcgctcgctcccggtgcaagttgcaccgcctaccggcggcggccatggtgagtgccgagtagtcgtcgtgtggcgcgggttcttctctgtctctgtccctggagcggttcttgtgttgacggtgatgaatgggttttgtttttccatggcggcgttgcaggaggacggtgcggcggcgcgggaggcggagaggtgggaggggtacgtcgactggaggaaccggccggcggtgcgcggccggcacggcggcatgctcgccgcctccttcgttcttggtaagtacacacgcacctcctcttccctttctttcttgctttcttgctttctttctttctagattcttctggaacccacagggacgatggataagcccagaattaattaagatcgatcatatcattgcactgttgcagctagctagctatcaccagcagcagcagcatgcaagcacgaaagaaagaaagctcgaataggatactcagccatggaccatctcctcctccaccttcttcttcttcctcctcccgttccctgcacctctcctctctctcttttctggagactgaaaggcacagcaccgtggtcagatcgatcggccatcatcaccaccctttacgcctcctcctccttttcctgatcagaccgcacccttttcccgccggatttggccgctttcgctcgcgaaacaagttgccttttctcccctttttttcgccctcctccccactggtcgccgttgggctccatttctctctatctctctctcccctgtttcttcctttccctttcacaccagtacaccactgtgctcttctcttccaacgaggttaatctcccatctctcctctcccccctgttcttgcaagttgggttgggttccccaacttgacccccccctcttgcaattgcgcatcgtcgtcgttatcatcagtggggagaagcttttgtacgatccaaacattggcgtccttccttgagtgtcctctgtaccttccctccatcaaatgcattgcatccacctgagaaaaagacggtgtccctgctctcgatcgacggcgacctcttcttgcaatcttgcgctgctgctgctgatggtggtggtggttgactggtgggcaccatggcggcttcggtttcgatatctctcccgttgatccgatcccgaatgttcagttggaaaatgactgccttttgcttccttgcatgtgtgaaggacttttttttttcctttttttttttgccctgacggttgtgagtgtgagagagagaaccagccatggattttggggagaaaaatttgccattataatttgaccctgtccaaaattgtcgctacgcgagcattgaattcgggcacgaatcgcaaggccgaaacggtcagggagaacaaagaaaattggccggcatgcactgggaaccgcacacattatgctggggcggttatatcagttaccaccgcacatgcatgctagtacttccaatttttcaaacgcctccgattaaaatacaactttacatctccatctgaagtttttcagtggcacacggtagctcaatttcatagcttaatttcaatggaaaatcctaccaatggagaacagtataacttaatttaatatatactgattaggatagagattttgtttttttttcaagatcgaatttggattgagaatattggctttgttgtgtgtgcagtggtggaggtgctcgagaacctggcgttcctggcgaacgcgagcaacctggtgacctacctgatgaatttcatgcactactcgccgtcgcagtcggcgacgacggtgaccaacttcatgggcaccgccttcctcctcgccctccttggcggcttcctctccgacgccttcttcaccacctacgccatctacctcatcagcgcctttgtggaattcctggtaagtaacagcacatctaaatttgttcgtagttgtagtactactaccatttttgtgtgtttttagttgagagtaattgatccaacttaagttagtctgcaagttagttactcacttaatttcctttataattgtttgccgtcataagcctaggaaaaaaggaaaccatatgccagcttacgcaatcgtagatataccgataataataagatgataagatgtttccggatagacacatatcacatatgtaggagtgtatattttagtgagatatatatgcatgcatggtgctcatcgtatctccatgctgacgtggaaggaatataccgggatgatcatgtccagctaggctgccacgtcatcgttgacttcctttctatcttctggacccgttggctattaccatcataacatgttttgttgaccggtctctagaatttagctgcatgtcgtaaagtgacctgtcagtaatcagagccgctcccatgatggcatcctgaccgtccaattagaacagaccccacaagattcgtggacaaggtcaaaaaatgacacctgtcaaagattagccaaacaggatgctaatctcgaggcaggatcgaacggctctagttcccgctagatgaccaccactatttgaccaaagattttgtgatcccggccctacactgaaacctctttttctccacgggttccatctgacaattgcctggaattaattggctaaacggagctcgcaattccctgtgatttgggttacatgagatcacatacatattcacatctagagattaattaggccaatgattaaattgtaaccatcactttattcgctagaagcaagcagagatagcctgggtcaaagggaaccctgtactgaactactgatcacggcccctatgtatcgtgactgcactagctaggtgctaggatatctatctaagtaggagtatctatcacaaaggcatgcttttatgcatgggcttgggacaatcgatcgatcgattcatggtcctcaagtttggcctggctaggctagcttggttggattgcaactgtgatggtccactgatggatcatagatggctactgctcgcttttagcgatggggagaaaacaacaacaagcttttagcttttagactttctttgaaatactttatctttctatttctacgagatatttggataaatatgtgtttgcaaccaattgcgcgttgaagtgttctgctttgttcatactgccttcattttttagatatataaatattattgatttctgaacataacgtttggtagctcattttttagaaaaaataattatgtaaatattatttttttcacttgttaaaagtattttagcgtaacttatatttattttcatatttgcactaaatttttacataaaacaaatggttaaacatcacttagaaatcagcaacattatacattcaaatttagagtggttagtatgagttttttttatgtgtgcgctgtatttttagcccaaaaatgtcgtgtatttttatgattgtgtgggtacgtagagcactagagctagtcgtaggatgagtacgtacgtaggatggaagtggatgtatacggcgtataagggtatagagacgtgtgcggtgcggttgcggtggatcacgtgggcgcagtaaccgtatatatctgtcgagtgccataccggcgaggtgaacatgattgttcttgaccaaaaaaatacagttactgtgcacatcaacagtcgtgtactgtagggctcatatcgtcgggctcagagacatatatggaaggaacggacgataacccaaattcagatcaatcagctagttacttgacatgactacgtcgccaccgtcgtcgacaggcgcatgggcagcgtacgttctggtatggtatagcgcccatcctatcataggtagcctacatcttaggctgtgtttagttcatgaaaaaagttaaaaatttgagaaaagttgggagttaaaaaaaaagttgaaagtttatgtgtgtagaaaagttttgaatatgatatgatataatggaaagttgaaaatttggggtagttgaggatggactagacacgaccttagctataccaaatgctacatctcatacggtcacaccacgagtgggacagggccgtattacggtcgccgtcgccgccgcctgagtagtgtcagtgtgtgagtgtgagtacccttcgggatggggcaataataatccattcatatatccaccgccaattccatcggcgcgcgcggccaaaaccgtcgcggagcccggcgccctggccgccccgtcacgcgctcgcccgggtcaccaccactcctctcgcgcagtcgctcgcacgaaatgtacgtgtttacgacgcgcgcacccctggatatatcctgaccggtcgggatcgatcttttttgatctggtacacggtgacctttctgggtcgccccttcatgaacgatcggttgatggatcgatcgataagtcgtcgattggttaatttattatgagttggtccatcaccagaaaaagcgaaaaacgggctatgatgattaagagagacggctgcaaatttacgatggattagtgatcgtcgaatacagtaccatgtaggacacggaattacggataggcacggatcttatcaacgtgcaggaacaagagccactgtggaacattctcgaggcatttctctcaccacctcccgcgatccgatccgatccgagaccgaccaccatctcttatcttatccccacccccctagccccagatcgaatcacacaactcatcactgtgatccagccagttctcccattccaccaacacacacgtacgacgtacggtgtccactagcgtgcgtacgtgcaaaccgcacaccgccacacaccacatcacaccacacactcgtcgtcaacgcgcgcgacgagagagtcgcacaaaaccaatcttggccaccgcccgcgcggcgcgcggccttcctcgcgtacgtcgagagagacgtacggaccgacgcgtgttgtcgcagcctcgcagggtgggtgtgggtgggggtggggcagccgcgcgcgcgcgcggcgcggccacggccggctaaagccgcgagtgcgcagccctggaggagaaggcgaccgtgcgtgcgtgcgtgcgcgcgcgccgcgtcaattcgcgttgccctactcctgcctcctcggcgtaacgaaacctgcggctgctagctagcgcgccgctggggcggtgcaagtggatcaagtggggagtttatttggtttcgggatttgcctgcagggtttctttcattctttggctgtgcctgtgcttagcttgcttttgctattccctcccggagaatattaatcatcgttttggtggtactcgtatttttttttcttcttacccacttgtttgacttgtgagcacctgagttattcgcgcgtaaaattttataggccggggaagcaagctattcagtccagccataattctggaaagattatcgtgtttccaaataaaatagtcattattcatagtctcaatttatctaagacttaaacgaatagataacttagatgattgtctgaaacacaaacgatcattttaatattcattagttacacttacatgcacatatatacagtggcgaagccaccgtaggggccagggagggccaacacccccctaacccctatgtgacctcccctcccatctcttctcccaaggataattagcccttataatctagccattaattacatcattagttgcagatgagactaactatataggataactgcctagctatatatgacttatgaaatgacttagttaactgatttatcattttaaaaatgattacaagactccaattaaaatcatggaacaaactgtttaaattggcaaattatgatctatgggttctcattctctcttctagctaatcgctataacatgtatgatgtcgagttagtgatcatacatcaacgctacaatatcactgttcaccgaaccttaagtaagttaccacgtctcgtaaatggcaccccccatctctaaattctggcttcgccactgcatatatatatatatatatatatatatatatctcttttggtattcgttacatacagaatgagttatttttttctgatactgatgataaaagtaataagtttaacacttttttgatagagagtatagtataggtacgccaccaaacaagttgcaatatggtgtggaaatcggaaacgaatggataggatagaccgtaggagcatttgttgttttccttcgtttccctttcggagtgttgcacattgcgccacgtggatcctgatagaatagccactgaatacacaaatacacaatggtactcaataatgttactcctatgtacgcaccgatcgtaccaagtacaggagcaccaccaccacttgtaaacatcttttctgcacacccgatttgatgggctaattaagatatgacaagtacagtagtactgctagttggctgtccgttctactaagttaggccatgtttagttcacaccaaactttttccaaactctcaactttctatcacatcacatcacatccaaaactttcctactcacgtaaactcccaactttttttttcaaactaccagttttccctaaacttctctccaatttaagaaactaaacacagcctccagactgatctctagactgatagtacttatcattttggataatggtgagatcaaatattaaaatctttaactatgaataattttttaaatatttatcttagaaaattggagactagatatatagattagtcttaaaaactactttaataaaatcatatatttgttgatgctttttatatattataatagaaaataatgatcaaagttactttttatgatcatgtttttatctaaaacgataagtattactccctctaattttttttgtttgacgttggttagcttaaaattgaactaaccaacgtcgtacatttgtgcaaggaggtagtattaatctgcagggagtacttccaagtcgcttgctgaccttggtgatctcacctgagcgccacaaaaacgatcgccgtacgtttgacttaccagcttcaaaaagctgcctcgagtttttttagcccaactgtatttacgtttgccggtcagcgctgacaaaagttactacgaacccatcgacgggcccctgtcggtctcgtcctcctcctccgctttaaccggctcacggaccacggcgaaggccaaagcgacgtcgcgcacgggcgcgcggccgcggcggcacatgcagcacgccgaccacttgcctccccccacgaaacttttctcgctgtcacctgatatctctttccccccaaccaaaccactagacattggcgtcacagttctgatcgggttggtatgctctgttgcaacatggcagtgcaaatttgcaacggaaaattgcagcagaaaattgatgctagtagtgtacgtagttgcatgtatttgggcctggacagtacatgggcctggaagcttttctcgtctgcagattttaggattttatatgggcctgcatatgattctctctcttttttttttttttgaacttttgttgatgtcaagcatggcgcgaatgtgttgcaggggctggtggtcctgacgatccaggcgaggacgccgtcgctgatgccgccggggtgcgccaaggttgccggcgcggcgtgcgagccagtgtcggggccgaagaaggcaatgctgttcgcggggctgtacgtgacggcgctgggcatcggcggcatcaagggctccctcccgtcgcacggcgccgagcagttcgacgagcacgcgccgcgggggcggaaggggcgctccaccttcttcaactacttcgtcttctgcctctccgtcggcgcgctcatcgccgtcacgttcgccgtctgggtggaggacaacaaggggtggcagtgggggttcggcatctccaccatcgccatcctgctctccatcccggtgttcgtcgccggctcgaggctgtaccgcaacaaggtgcccacggggagcccgctcaccaccatcgccaaggtcgtcctcgccgccgcgctcgctcgccgcggcggcgcgcagagcgccagcaacggcgctgtcatcgaccgcgcgcccagccccacggggagcacggacatgaaggagtactgcaagcccggcgacatctgcggcgtcgccgacggcgccgccgaggtggctaccgagccgtcgcaggagctggtgttcctgaaccgggcggtgcagcggcagccgcggtgcggggcgctgtcgtgcacggtgcaggaggtggaggacgtcaagatcgtgctcatggtgctcccgatcttcttctccaccatcatgctcaacagctgcctggcgcagctgtccaccttctccgtggagcaggcggcgacgatggacacccgcgtcggggggctcaaggtgccgccggcgtcgctgccggtgttcccggtcaccttcatcatcctcctcgccccggtctacgaccacatcatcatcccgttcgcgcgacgcgccacgggcacggagatggggatcacccacctgcagcgcatcggcacggggctcgtcctctccatcgtcgccatggccgtcgccgccgtggtggaggtgaagcgcaagaacgtggcgtccaacgccggaatgctcgacgcggcggcgccgctgcccatcaccttcttctggatcgcgttccagtacctgttcctggggtccgccgacctgttcacgctggcggggctgctcgagttcttcttcagcgaggcgccggcgaggatgcggtcgctggcgacgtcgctgtcgtgggcgtcgctggcgctggggtactacctgagctcggtgctggtgacggtggtgaacagcgcgacggggcgcggcgggcggcgggcgtggctgcagggggagaacctgaaccactaccacctggagaggttctactgggtgatgtgtgtgctcagcacgctcaactacctcttcttcttgttctgggccatccggtacaagtacagaaacgccggggtcatcaagggatgatgatcaatctgtaatgcagggttaactgtttaattatctggcaaggtaaaaaaaggagggaggttaatttggtggtcttgaggatgctcattgctgtgtggaattggttggctggctgtggccgatgaatgaaaagaagcagcgattaagcaagttgttc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0581000, RefSeq:Os06g0581000