Os06g0589300

From RiceWiki
Revision as of 09:24, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0589300| Description = Viral coat and capsid protein family protein| Version = NM_001064495.2 GI:297606097 GeneID:4341405| Length = 7822 bp...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os06g0589300

Description

Viral coat and capsid protein family protein

Version

NM_001064495.2 GI:297606097 GeneID:4341405

Length

7822 bp

Definition

Oryza sativa Japonica Group Os06g0589300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:23982231..23990052

Sequence Coding Region

23982560..23982859,23983348..23983436,23983561..23983666,23983761..23983889,23984386..23984470
,23984577..23984686,23985007..23985207,23985616..23985977,23986195..23986278
,23986374..23986499,23986582..23986744,23986961..23987119,23987730..23987857
,23987954..23988073,23988338..23988482,23988575..23988651,23988901..23989279
,23989908..23989994

Expression

GEO Profiles:Os06g0589300

Genome Context

<gbrowseImage1> name=NC_008399:23982231..23990052 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:23982231..23990052 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagccctcggcggccgtcgcgtcgaggccaccgagcttcaccgcgcagacgaatgccctcctccgcaagaatctcatcttccagaaacgaaacaggaaaggaaccattcggctaatcatagttccgatatacctctgcctcttgctcaccattcttcagagagtcatcaacagcgttcttgacaagcccaagttcagatgtggttgcaagtgtgttgatgtcaacggcacaggctcttgccaaaatgtgtgtggaattcagtactctacactggatcaggctggcagttgccccataccgaaccccccggaatggcctgctctcttgcagttaccgcgccctgagtatcgcgccatgcaggaatcctccttgtatgcaggtttcccagatgtatcatgcagaaaatcacaatcttgcgcagctactatacccttcacaggagcaaatgagaccctatctaacattgtcatgcaaaatttgttcacaagctcaccgctttcaaatctttctgataatgcgagcatatccagtcttctccttgggacagatgtaccgggtacttatacaggcttcattgaacccgcttttgtctcagatcgacccatatatgttcttagacctcaatgcaaagccagtgattcagttacagtccccattacgtttggtgatattaatattcggaaagagatgttatgtattcaaggtttacccttgtggaggaatagttcagcaataataaatgaggaaaccttcaacggctacaggaaagggaaaagtcaggaagggataaatgagattccaatggcctatgatttccaagactcaaacgagaagcatttcagcgtgttagctttatataactcaacttatcagaatgtgtcttatgttccaatgccatttggacttctgcatatctcgcgctccttgaacgcggtctcaaatgcatatctccagtttcttcgaggatcaggtgtaaaaatgttgcttgcattcacaaaagaaatgcctaagcaagagactcgtttgagatttgatttttcttctgttatcggccctctcttttttgaatgggttgttgccttgcttttcccggttatgttgacataccttgtatatgagaagcaacataagctccgaacaatgatgaaaatgcatggacttggggatggcccttactggattatctactatgcatatttccttattttgtccatggtgtatttggttctatttgtcgtttttggatccgttataggtctaaactttttcaagataaatgactacagtatccaatttgttttcttttttagtttcatgaacctgcagattgtactagccttcctaactgcaaccttcttttctaaagtcaacactgctcaagcaattgcatacctgtacatatttggatcggggttgattgcaggatctcttattcgcaattttattgaaggtggcaagttcccaaagcactggattacagttctcgagataatacctgcattttctttgtatcgaggactatatgagcttggccaatatgctattagggcttctgaagctggaagtcatggcatgagatggagtgatctaaatgaccatgcaaatggaatgagagatgcgctgattattattattctagaatggttggttttgcttcctgttgcgtactatttggaccattctgcttcagttggacacaaatctagtttcctttccctaataaaaaatctgctgaagaagaacccaacttggagaagggtatctattaacgaagtagttaacgacgctgttcatgtagaaatggtgaagcaagatattattaaagaaagggaaactgttgatcaagtactacaacaacagagtagcggctatgcagttgtctgtgatgatctcaagaaagtatatcatggaaaggatggtaatcctgataagtttgctgttcggggtctatcacttgctttgccttatggagagtgcctgggcattcttggtcctaatggagctggcaagagctctttcattagcatgatgattgggcttacaaggccaacatccggaaatgcattcgtacgggagttcagcatacagactgacatggaaaagatatataacagcatgggggtttgtccacagaatgatatgctctgggaaatgctgaccggcagagaacatctccagttttatgggcggctgaagagcctcaatggctctgatttggacactgctgttaacgaatctttaagaagtgtaaatttacttcatggtggtgctcctgataagcaagtcaggaagtacagtggtggcatgaagaggcgtctcagtgtagccatctcgctgattggagatgctaaagttgtctacatggatgagcccagtacaggattagacccggcttcgaggaagagtctatgggacgctgtgaagcaagcgaagcgagacagagcgatcgttcttactacccattccatggaagaagctgaagttctctgtgacaggttgtgcatcatggtagatggcagcctccagtgcattgggacacccaaagagctcatagcgcgatacggagggtactacgtgctgacaatgacaacatccccggagtttgagcaagaggtcgagaatctggcgcgaaagctctcaccgaacgcgaggaaagtataccatctgtctgggacacagaagtacgagctgccgaagcagcaggtgaggatcgcggatgtgttcatggccgtggagaatttcaagaggaggacggaggtccaggcgtgggggctcgcggacaccaccatggaagacgtgttcgtcaaggtcgccaaaggggcgcagtcgagcgaagaactctcatga</cdnaseq>

Protein Sequence

<aaseq>MEPSAAVASRPPSFTAQTNALLRKNLIFQKRNRKGTIRLIIVPI YLCLLLTILQRVINSVLDKPKFRCGCKCVDVNGTGSCQNVCGIQYSTLDQAGSCPIPN PPEWPALLQLPRPEYRAMQESSLYAGFPDVSCRKSQSCAATIPFTGANETLSNIVMQN LFTSSPLSNLSDNASISSLLLGTDVPGTYTGFIEPAFVSDRPIYVLRPQCKASDSVTV PITFGDINIRKEMLCIQGLPLWRNSSAIINEETFNGYRKGKSQEGINEIPMAYDFQDS NEKHFSVLALYNSTYQNVSYVPMPFGLLHISRSLNAVSNAYLQFLRGSGVKMLLAFTK EMPKQETRLRFDFSSVIGPLFFEWVVALLFPVMLTYLVYEKQHKLRTMMKMHGLGDGP YWIIYYAYFLILSMVYLVLFVVFGSVIGLNFFKINDYSIQFVFFFSFMNLQIVLAFLT ATFFSKVNTAQAIAYLYIFGSGLIAGSLIRNFIEGGKFPKHWITVLEIIPAFSLYRGL YELGQYAIRASEAGSHGMRWSDLNDHANGMRDALIIIILEWLVLLPVAYYLDHSASVG HKSSFLSLIKNLLKKNPTWRRVSINEVVNDAVHVEMVKQDIIKERETVDQVLQQQSSG YAVVCDDLKKVYHGKDGNPDKFAVRGLSLALPYGECLGILGPNGAGKSSFISMMIGLT RPTSGNAFVREFSIQTDMEKIYNSMGVCPQNDMLWEMLTGREHLQFYGRLKSLNGSDL DTAVNESLRSVNLLHGGAPDKQVRKYSGGMKRRLSVAISLIGDAKVVYMDEPSTGLDP ASRKSLWDAVKQAKRDRAIVLTTHSMEEAEVLCDRLCIMVDGSLQCIGTPKELIARYG GYYVLTMTTSPEFEQEVENLARKLSPNARKVYHLSGTQKYELPKQQVRIADVFMAVEN FKRRTEVQAWGLADTTMEDVFVKVAKGAQSSEELS</aaseq>

Gene Sequence

<dnaseqindica>7194..7493#6617..6705#6387..6492#6164..6292#5583..5667#5367..5476#4846..5046#4076..4437#3775..3858#3554..3679#3309..3471#2934..3092#2196..2323#1980..2099#1571..1715#1402..1478#774..1152#59..145#accaccagaagcgagagaaagaaaaccgaaatcacgcgaaccgccgccgcgtgacgcgatggagccctcggcggccgtcgcgtcgaggccaccgagcttcaccgcgcagacgaatgccctcctccgcaagaatctcatcttccaggttcggatccccctttttccatccagccatttctttcctcttcgccttaactgctatgatctgtttggtactcggatgagtcttctttgttgttctgatgatatgccttagggaaaagaggaaactgcaagatggtcagtacaaaatttcacttgttgtttttttttcaaaaaaaaggaacagcaaaatttcggcataatttgctagttttcgttgttcttgaagtgtaggcgtcaacttgttctggtgaagtcgtgggcttgagttatgtttattcagaatattctcttgtcgtcgttgttgactttttggcatggccgtcgtcccttgatttatattgatgtcaaaatggaaagaatttgggaccaatacgcatccatcagcataggtgaatttccttgatcgtttgaattatagatgtttggaacgcgaagaggcgcactgaaatcccttttgtttttgtgcttcatatttcacttcgatggctgtttctgtagattattagtgtcaactgtcaagcgtcttttacatttcacacgattgcaattcgttttttattaattgcacaaactggtcgttgagtcaagctaattaagaagtggcatccatgtttgatcgtttcttgcagaaacgaaacaggaaaggaaccattcggctaatcatagttccgatatacctctgcctcttgctcaccattcttcagagagtcatcaacagcgttcttgacaagcccaagttcagatgtggttgcaagtgtgttgatgtcaacggcacaggctcttgccaaaatgtgtgtggaattcagtactctacactggatcaggctggcagttgccccataccgaaccccccggaatggcctgctctcttgcagttaccgcgccctgagtatcgcgccatgcaggaatcctccttgtatgcaggtttcccagatgtatcatgcagaaaatcacaatcttgcgcagctactatacccttcacaggagcaaatgagaccctatctaacagtaagtaatctgtagttctgtaccatctacttctttaaacctgcctcaaaatccacttaggacccctttagaaaaatgcttagggcttgttggatgaagaagtgaggcatgattctcttattatttttttgttttcagtaatgatgaaataatgattatatgacttatctgagagaaggaaaatctgttaagctgtagtgtgttcaccatattccataatccactaatttttgcccatttgtttggcagttgtcatgcaaaatttgttcacaagctcaccgctttcaaatctttctgataatgcgagcatatccagtcttctccttgtaagttgaaataaccatattattacttgtatggctacttttttttaagggtgaacatcaaagaacttactctattatcatgtaacttccaggggacagatgtaccgggtacttatacaggcttcattgaacccgcttttgtctcagatcgacccatatatgttcttagacctcaatgcaaagccagtgattcagttacagtccccattacgtttggtgatattaatattcggaaaggtaaaattcttattatgtatcgcttctactgtttctgagtagattaatctgaaataacaatgttggcaaactgatgaggttgtcagattattaacctgataccatgacagacttgtgattgtcattgtttgccataagaaccatcaacctctgtgcactccttcaatgacattctgcatattaccgtttatgtgcctcttgttttgttgaatgtttttggttgaaaatgacttaatatctgaacttcaaattctgttttagcagagatgttatgtattcaaggtttacccttgtggaggaatagttcagcaataataaatgaggaaaccttcaacggctacaggaaagggaaaagtcaggaagggataaatgagattccaatgggtatgcaggcatttcttacctatgccattagtttattattgcatcatatgctggcattaaaggtgcaaataactctaattacttctgttattacagcctatgatttccaagactcaaacgagaagcatttcagcgtgttagctttatataactcaacttatcagaatgtgtcttatgttccaatgccatttggacttctgcatatctcgcgctccttgaacgcggtgggtctcacttcataaaattgaccttttattagggacaaccatagactagtggtagatcatagttgagataatgggttcaagttaccactcttcttgaaatcaaatatatctgtttaatttgtaaagtggatctctcattcttatttttcttgtctgccaacccactaaaaagtttgaaacatttttatatttcattctgcaatcatttatggttcataacaaattgacaagaagatccaaggaaacatgacatctgatgtgaaccagaatattcataatactagaaaactgtaggctgtaataatccaggagggtttaaaacttatgagcacgcataatcatgtgttttcggcttgttctctagtaagtatagtagcacattatgaatttattagggacaatacctttcttgtcctttttacactatagttttgaaattttctactctgtttagaatattgaaggatcaaaactgatcccattatcattatagtcatatcatacttctgaaaaatatctctaacttggcaatactattatgcaaagcagtcaggaagctatacaactcagttctaccaataacatatgtttctgggcatctgtgtaggtctcaaatgcatatctccagtttcttcgaggatcaggtgtaaaaatgttgcttgcattcacaaaagaaatgcctaagcaagagactcgtttgagatttgatttttcttctgttatcggccctctcttttttgaatgggttgttgccttgcttttcccggtaagtggcaacaaattgatagtggtcttcccttttgatatagtagctatgaatttgacttgttaactagtccctctcagggtttcttaatagttaatagtaagtaaaatattgatcctcatattagatatattgaagtggagaaaagtagagaactgttagaacaaatcatgatcagttttataattcatgatgaaaatttgagatttaatgcaggttatgttgacataccttgtatatgagaagcaacataagctccgaacaatgatgaaaatgcatggacttggggatggcccttactggattatctactatgcatatttccttattttgtccatggtgtatttggttctatttgtcgtttttggatccgttataggtaggaagctattcccaacggttattttcaacaatcattacttgatttgacccattttatctaactcagttgtaatttgcaggtctaaactttttcaagataaatgactacagtatccaatttgttttcttttttagtttcatgaacctgcagattgtactagccttcctaactgcaaccttcttttctaaagtcaacactgctcaaggtacaacaaacctataccatttatctccatatccgtgacctattctgtactgcaaaatatatgatgtttcttgtttcttatgttctttccaccagcaattgcatacctgtacatatttggatcggggttgattgcaggatctcttattcgcaattttattgaaggtggcaagttcccaagtaagtttagcaaatattaccaaatggatgtttttaacaatcacattaccttcatttgaatattatatcacagttttcactatgccatagcaaggcagcaacagtttttaaacataagtaaactagccatatgggatgcctttcctgctgctagcaatttattttgataaatggggctgaaataattgcacaaaattttcctgttgtgttactgcagagcactggattacagttctcgagataatacctgcattttctttgtatcgaggactatatgagcttggccaatatgctattagggcttctgaagctggaagtcatggcatgagatggagtgatctaaatgaccatgcaaatggaatgagagatgcgctgattattattattctagaatggttggttttgcttcctgttgcgtactatttggaccattctgcttcagttggacacaaatctagtttcctttccctaataaaaaatctgctgaagaagaacccaacttggagaagggtatctattaacgaagtagttaacgacgctgttcatgtagaaatggtgaagcaagatattattaaagaagtaagtttcttatagttcttatattgcactcatcagtctttcagacagttcaatctcccacctcaatgcatttttttttgaggggaaacactactagacttacccagtagttataaattttataaataaaaaagtccatatttacatgaaacagaaaagaggaaaaggaaaagaaacacacagcaaagttcaataaggtctgtaaatgcattgcaattttttacattgcaatttcaggattacctataaggctgcaatatttttcaacaaactactctacataattatgtatatcatccagtactaatttactatattcatttcttgggaatcacataaatctgcatatcagatgttacctactacttgatatctagtggttgctaattttttatgattggattacagagggaaactgttgatcaagtactacaacaacagagtagcggctatgcagttgtctgtgatgatctcaagaaagtatatcatggaaaggatggtaatcctgataagtttgctgttcggggtctatcacttgctttgccttatggagagtgcctgggcattcttggtcctaatggagctggcaagagctctttcattagcatggtttgtaatttgatccctcacacgacatacttgatccaaacaattgcctagtcattttctctttcttctgcttaaacacataaattataattgtaggatttcttgtccatgacgattattttttctttatagtattctcttttatctgttaatgttttatatatttctgtagaattaattatgctttattgaccatatttctagaaccactgaatgtcctttttaaaatcccgaaatttatagcttttgcgctttagttttctaaatcctattcggtgttctgtaataatctctgtttccttccaactgttgccttacagatgattgggcttacaaggccaacatccggaaatgcattcgtacgggagttcagcatacagactgacatggaaaagatatataacagcatgggggtttgtccacagaatgagtaggatatgcaacctactattgcagatctgttgtgtgcattagcacttgttcatgtaaaaacaccttcgaattatcaccttttgtttttgctatgttgaatgcagtatgctctgggaaatgctgaccggcagagaacatctccagttttatgggcggctgaagagcctcaatggctctgatttggacactgtaagttatatcaagtataccaggtcccttatttcttcttctgatagcataatttttaaggtgaagctagcatatcttaatatcaatgtactgtctttcaatacttatgcccgtagatgtgctttattatatggatttttatactccaaagaaaccttataggatttgaattaagaacaaatgagtggatgctcgaaagcactgaaccatgtattaagaatggaagagtgtttgaagcataaagtgtcaagtgcatgggttttcatggagcaaaatacttctctgaactgaaaaaatggatataatctagatagtcttccctgattttctccatcatccttttttcattttcatttgtcttgaaatattttcagtatgtgttttttgacacagtacttctaaatttactagtataatatactgaataggacgctttcctactatttctatttagaagcctttcagagttatttactgaaatgaaaatgatttgcaggctgttaacgaatctttaagaagtgtaaatttacttcatggtggtgctcctgataagcaagtcaggaagtacagtggtggcatgaagaggcgtctcagtgtagccatctcgctgattggagatgctaaagtacacctttctagctacagcgcttaccaacatcttcttgcgttgtgactcatcgataattccctgcttatgcacattcataaaatggcctcaggttgtctacatggatgagcccagtacaggattagacccggcttcgaggaagagtctatgggacgctgtgaagcaagcgaagcgagacagagcgatcgttcttactagtaatgttcaaactacataccaattttgaatatgatacactacctaccttgtgtttggacataatttctcttccatgattgaattaacacgcttccttttgttcctgtgacacatcttttgcagcccattccatggaagaagctgaagttctctgtgacaggttgtgcatcatggtagatggcagcctccagtgcattgggacacccaaagaggtttaatcatctcacaaacctacttcataatccaataaaaataactattggaagcattgttcctcgagaaattttatagtatttaagaaagtatatctaggtatcaaaattttacactaaaaattttggtacctcaagatacaagtatctaaaagtaccaagttttacgatagaaaaagtggtactcccttctttttttaatgtatgacgccgttgactttttaattaacgtctgaccattcatcttatttaaaatttctgagcaaatataaaaatatttaaatcatcctgaaagaacatttgatgatagattaagtcataataaaataaataataattacataattcttttgaataagatgaatggtcaaacgtatctcaaaaaatcaacagcgttatacattaaaaagggaacttctcaaggatggtaaaactatctttgttccttgcttcatctaaagatttaacacaaaaattttcaatgacagctcatagcgcgatacggagggtactacgtgctgacaatgacaacatccccggagtttgagcaagaggtcgagaatctggcgcgaaagctctcaccgaacgcgaggaaagtataccatctgtctgggacacagaagtacgagctgccgaagcagcaggtgaggatcgcggatgtgttcatggccgtggagaatttcaagaggaggacggaggtccaggcgtgggggctcgcggacaccaccatggaagacgtgttcgtcaaggtcgccaaaggggcgcagtcgagcgaagaactctcatgatgatctggtgcaaaaatgatgttttgtttgtgctgttctgatgtactttgtacagaaagtaggataaatcttttgtcaggcattagtttgcttatttttctgtacataaggatcctatggcatgttgtttttgttcaatcttcttttggtcttttgtagataaggtttgtgttattgtgtatgttatagaaaaaaagatggtgtgtgtaggcgtatattggtgattgtattttatatatgtttgtcaacttgttgctgcacgtatatgtctctgcaaagaatcataaacctttgaccagaagcctttgaattgatcatattctttgtgt</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0589300, RefSeq:Os06g0589300