BGIOSGA037544

From RiceWiki
Revision as of 18:39, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA037544

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA037544, complete gene.

LocusTag

OsI_38637

Ensembl Transcript ID

BGIOSGA037544-TA

Ensembl Protein ID

BGIOSGA037544-PA

Length

6007

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:17694718..17700724

Sequence Coding Region

17694718..17694817,17695435..17695529,17695783..17695926,17696290..17696547,17696630..17696701
,17696794..17696859,17697247..17697381,17697471..17697552,17697639..17697734
,17697842..17698018,17698121..17698227,17698316..17698456,17698639..17698775
,17698858..17699111,17699196..17699338,17699461..17699619,17700086..17700498
,17700586..17700724

Genome Context

<gbrowseImage1> name=IndicaChromosome12:17694718..17700724 source=RiceIndica12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome12:17694718..17700724 source=RiceIndica12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCTGCGGCGGGGGCGGAGGGGGAGGAGGAGATGGTGGAGAGGATGCGCGGGTGGGCGAGGGACATGGACGTGGCGTCACGCAGGGCCGAGGAGGAAGGACACTTCTTAGCAGAGATTTTTAGCAGTATTTACAGTACAACTAGTCGATGTGAGCTGAAGGTTTACTGGGATGACAATTACAGCAATGAGGCGGTTGTACAAGCCCAGTCAGATGCTGCAGGCCCCACGGATGGCTCAGCTCTGTGTGCATATCAGTACTTTGAGAATCTGCGGAACTTCCTTGTTGTTGTAGAAGATTTAAGGCTTCCTACATTTGAGGTGTCCGATTTAGAAAAGGGTGGCAAAGGTGTTCGGGTTGTGGATTGCGTTCTTGCTTTGAAGTCATTCAGTGAAAGTAATAAAACAGGGAGACAAGCTTCGTGTAATTATGGCGGCCTTTCGAAACCCTTGACAGCCAGAAAGTATTTTATACTCAAGAATACTGATGCTTTTATGAATAAGATAATGAAAGGGCACTCAGCAGAGGCAATCCAGAGTGAATTTTCAGAGGGGCAAAGCATAGTTACTGATTTTTCTATAGAGTCTAATGAGATGACTACTTCAGACTCCCTTAGCATTCTTTTGCGTAAAGTTCTCTTAGATAAGAAACCAGAGGAAGTCCCATTGATTGTTGAGTCGATCCTAAGCAAAGTTATTCAGGAATATGAGCATCGAATTGCAATCCAGAACAAGATGGATGAGGAGGAGCAAAATCTCTTGAATATCACGGAACAGGTCAACCATGTAGTTGTAAATGGTGATGGTGAAATTAAACAGTTCCAACTAGAGGCACTGACAAATTTTGATGTGCAACAAAAACAGATCCAGGAATTGAAGGGTTCTCTTTCTTTTGTCAAGTATGGCATGGAACAACTGAGATTACAGTACTCTGAAGAATTTGCTAAACTTGGGAAACATTTCTACACTCTCTCCAACGCGGCTTCCAGCTACCATAAAGTTCTTGAGGAAAACCGCAAATTATACAACCAAATACAGGACCTTAAAGGAAATATTAGAGTATACTGTCGAGTGAGGCCTTTCCTACCTGGACATAGAAGTTTATCAAGCAGTGTTGCTGACACGGAAGAAAGAACAATCACAATAATCACACCCACAAAATATGGGAAAGATGGGTGCAAATCATTCAGTTTTAACAGGGTTTTTGGTCCAGCATCTACTCAAGAAGAGGTCTTTTCAGACATGCAGCCTTTGATCCGTTCAGTCCTTGATGGTTTCAATGTCTGCATATTTGCATATGGCCAAACTGGATCAGGAAAGACTTTTACCATGAGTGGACCGAAAGTTTTGACAGAGGAAAGCCTCGGTGTTAACTATAGAGCACTAAATGACTTATTTAATATTAAAGCACAGAGAAAGGGGACAATCGATTATGAAATTTCTGTGCAGATGATTGAGATCTACAATGAGCAAAAAGGGCTTGCTGTTCCGGATGCAAGCATAGTTCCTGTCACATCTACGGCCGATGTTGTTGAACTGATGAATCAAGGCCAGAAGAATCGTGCAGTGGGTTCAACAGCCATCAACGATCGAAGTAGCCGCTCTCATAGCTGCTTGTCTGTTCATGTCCAAGGAAAAGATTTAACATCTGGGGCAATGTTGAGAGGTTGCATGCATCTTGTGGATCTAGCTGGTAGTGAAAGAGTTGATAAGTCTGAGGTTGTAGGAGACAGGCTGAAGGAAGCACAGTACATAAACAAGTCACTTTCAGCATTAGGAGATGTGATTGCATCTCTTGCACAGAAAAATTCGCATGTCCCTTACCGAAACAGCAAGCTTACCCAGCTTTTGCAAGATTCTCTAGGAGGACAAGCAAAAACGCTGATGTTTGTTCACGTAAGCCCGGAACTAGATGCTGTCGGTGAGACAATAAGCACATTGAAATTTGCTGAAAGGGTTGCTTCAGTTGAGCTTGGTGCAGCAAAAGCAAACAAAGAAGGCAGTGAGATTGCTACCCTGAAGGCGGCATTGGCTAAAAAGGAAGGAGAACCAGAAAACATTCAAAGCACACAGTCAAGCCCTGACATGTATAGAATTAAAAGAGGCAATGCAATACCTGCCTTCCCTAAAAATAGACAGCCAATGGAAGAAGTTGGAAACTTAGAGGTCCGGAACAATGCCACTCCAATGCAAAAGAAGGCCAGCTTTCATTTTTCTGGTGTCCTCAGTGAGAACAACTCATCCGACTTGGCTCAAAATTGCAATGGCATTCGGAAGACCAATAAAATGGCTGTTGGTAATAATCAATTTGCGAATGGAAATTCCATTCTAGAGCAGGAGCCTGACGCAACTCAGCTTCCAACATTTTTCTACCAAAGATATGATCCCGACAAGCAAAGGCGTAGGGCTGAACCAGTAGAAACTGATGACTCGGATAGCTTTGATGCTGCTACTAGCTCGTCTTCCGACCAAGAAATGTTGCTGTCCACCAGTGGACTCAAAGCTGATGGTATTGCCAGCAGAGGTGCCTTTATTATAAAGAAACCTCAAACAAAGAATACGAAAATTACAGCAACGAAGATTCCAAATCTTGCAATGAAATCGCCAATGTCAGAGAAAAGGCTGCAAACCCCAATCAGGAACAGCAAGCAGCTACCTTTCAGCACTACGGGTGGTGGAAGAAGAACTCCAAATGGCAAAATTAACACTCCAAAATAA</cdnaseq>

Protein Sequence

<aaseq>MAAAGAEGEEEMVERMRGWARDMDVASRRAEEEGHFLAEIFSSIYSTTSRCELKVYWDDNYSNEAVVQAQSDAAGPTDGSALCAYQYFENLRNFLVVVEDLRLPTFEVSDLEKGGKGVRVVDCVLALKSFSESNKTGRQASCNYGGLSKPLTARKYFILKNTDAFMNKIMKGHSAEAIQSEFSEGQSIVTDFSIESNEMTTSDSLSILLRKVLLDKKPEEVPLIVESILSKVIQEYEHRIAIQNKMDEEEQNLLNITEQVNHVVVNGDGEIKQFQLEALTNFDVQQKQIQELKGSLSFVKYGMEQLRLQYSEEFAKLGKHFYTLSNAASSYHKVLEENRKLYNQIQDLKGNIRVYCRVRPFLPGHRSLSSSVADTEERTITIITPTKYGKDGCKSFSFNRVFGPASTQEEVFSDMQPLIRSVLDGFNVCIFAYGQTGSGKTFTMSGPKVLTEESLGVNYRALNDLFNIKAQRKGTIDYEISVQMIEIYNEQKGLAVPDASIVPVTSTADVVELMNQGQKNRAVGSTAINDRSSRSHSCLSVHVQGKDLTSGAMLRGCMHLVDLAGSERVDKSEVVGDRLKEAQYINKSLSALGDVIASLAQKNSHVPYRNSKLTQLLQDSLGGQAKTLMFVHVSPELDAVGETISTLKFAERVASVELGAAKANKEGSEIATLKAALAKKEGEPENIQSTQSSPDMYRIKRGNAIPAFPKNRQPMEEVGNLEVRNNATPMQKKASFHFSGVLSENNSSDLAQNCNGIRKTNKMAVGNNQFANGNSILEQEPDATQLPTFFYQRYDPDKQRRRAEPVETDDSDSFDAATSSSSDQEMLLSTSGLKADGIASRGAFIIKKPQTKNTKITATKIPNLAMKSPMSEKRLQTPIRNSKQLPFSTTGGGRRTPNGKINTPK</aaseq>

Gene Sequence

<dnaseqindica>1..100#718..812#1066..1209#1573..1830#1913..1984#2077..2142#2530..2664#2754..2835#2922..3017#3125..3301#3404..3510#3599..3739#3922..4058#4141..4394#4479..4621#4744..4902#5369..5781#5869..6007#ATGGCTGCGGCGGGGGCGGAGGGGGAGGAGGAGATGGTGGAGAGGATGCGCGGGTGGGCGAGGGACATGGACGTGGCGTCACGCAGGGCCGAGGAGGAAGGTGGGTTCTCTCTCTCGGGCGGCATTTCGTAGAACACTCTGGGTGTGTGTGTGGGTGGGTGATTTCTTGATTTGTTTGCTCTGCTGTTCTTGGTTGACCCGTTTCGGGTTTCAGCTTAATTTTTTGGGTTTTTTATGGTTTAGATGGTTGATCGAACTGGGGAGGATCTCGTATTGGGGGCTCTGATGGTTTTGATTTTGACGTTTCAACTTTTTTTTGGTCAGATTCAGTTTAGTATCGATTCGGCTTTTTCAAATTTTGTTGGTGCGATTCGGGTTGAAGATTTAGTTGGGTAGTGGTAATTACTAATTAAAGGTTTCATTTAATAGCGTCGCTTGAAATTGAGCTAGTGTTGAGCTCACAGTTGTGTCGGTTTCACGAGATCTTTGTGTGGGGGGAAGGGTTTATGCTTTATGCCTTTCTTGGTTCAGACTAAGGAGTGGTAGCTGTACCATACTGGTATACCTTGATGTGTCCAGATAATAGTAGCACTCTGAAAATTAGTATACATTGATGTGTCCAGATAATAATGCCACTGAAAATTATGTAGTGATGTAATGAATTATGAATCGTGTTATCATAATTTTGTGGTAAGCAAAAATGTTGGGCATGTTTAGGACACTTCTTAGCAGAGATTTTTAGCAGTATTTACAGTACAACTAGTCGATGTGAGCTGAAGGTTTACTGGGATGACAATTACAGCAATGAGGCGGTATGACGCGGCAAGTTGGTTGCGAAGCACGGTTGGGGTAGTGTGTGCAAGGGACCTGCCAGATGAACCGTCTGAGGAGGAATTCCGGCTTGGGCTGAGAAATGGGATTGTTCTTTGCAATGCCCTGAATAAGATTCAGCCTGGTGCCATACCGAAGGTTGCATTTCTCGCATTCAAATTTAATAGACTATTCAGATGCCACAAATACTAATATGTGATGACATTTCTCTTGGCAATCTTAAAATCTTTCCAGGTTGTACAAGCCCAGTCAGATGCTGCAGGCCCCACGGATGGCTCAGCTCTGTGTGCATATCAGTACTTTGAGAATCTGCGGAACTTCCTTGTTGTTGTAGAAGATTTAAGGCTTCCTACATTTGAGGTGTCCGATTTAGAAAAGGTAATTCTGTCATGCTGATTTGGAGAGTTCATGTCACAATCCATTTTTTCATCCTAGAGGTTCAATTTTCTTTAGACAGGCTTACCTCATCATTTGCAATACTGCCTTTGGTCACAAATATTTGTTGTCTCGAACAAGCGTCTAGTCAAACTTTTTAAATCAATTTCTTAAATATTTAGATTGGACACAATTAAATTATACAGATATTTTTTTTCCCAAAAAGTAGTTTCAGAATATTATAATTTTAATGGGTTTTAAAGATATATCTATGACTAGAGGGAGAAATCTTGAAATGAATGTTGCATCACTAATATATGAGTCACTTGAGAAATTGATGCATTTTATCTGCCAATTCGAATGTAGGGTGGCAAAGGTGTTCGGGTTGTGGATTGCGTTCTTGCTTTGAAGTCATTCAGTGAAAGTAATAAAACAGGGAGACAAGCTTCGTGTAATTATGGCGGCCTTTCGAAACCCTTGACAGCCAGAAAGTATTTTATACTCAAGAATACTGATGCTTTTATGAATAAGATAATGAAAGGGCACTCAGCAGAGGCAATCCAGAGTGAATTTTCAGAGGGGCAAAGCATAGTTACTGATTTTTCTATAGAGTCTAATGAGATGGTAAGAACTATAATTTGGTCTGATTTTTTTTGGGCACAATCATGCTTATACTTCGAAATGACCTTTACCTTCTTGTTTACAGACTACTTCAGACTCCCTTAGCATTCTTTTGCGTAAAGTTCTCTTAGATAAGAAACCAGAGGAAGTCCCATTGGTAAGCCTATTTTGCTTGAAGCATAATTGATTATTATGCGTTGTGATTGATGAACACTGAGAATATAACAAAATACTCTCTAATTTGGTCAGATTGTTGAGTCGATCCTAAGCAAAGTTATTCAGGAATATGAGCATCGAATTGCAATCCAGAACAAGGTGTGTTCCGTTCCACTATAATTATGATAATGTTTCTCTTTTTGCTATTTAGAAAATCAGGTTTCTCCAAATTACTTGGGTTCTGAAGTTAGTAATAAGACTTGATGGTTCGGTGTTTTTGTTGACCTTTATGGTTAGGACATACAAACTTTAATTTGGGTAAGAAAAACATCAGGGGTTAAATTCATAGGAGATTGTGTAGGTTCTGTGTCATGTTCCAGATTATATACACCATCAGAAGCTGAAAATGCTTCTAGTTGTGACCAGATGAGGGTATATTATTTGTTTGAGTAAATTTCACATTATTTATTCTAAATCTGTGGTTGCTACACTCTACTCAATTTTTCGGTACTTTAATAACTGATGTTTGTTATGGTGTATATGAAGATGGATGAGGAGGAGCAAAATCTCTTGAATATCACGGAACAGGTCAACCATGTAGTTGTAAATGGTGATGGTGAAATTAAACAGTTCCAACTAGAGGCACTGACAAATTTTGATGTGCAACAAAAACAGATCCAGGTATTACTTTTGTGTTCCCCATTCTTTGTTTGATATTTTATAACCTGGATTCCCATGAATATTATTTCTAACAGTTTATACTACCATAGGAATTGAAGGGTTCTCTTTCTTTTGTCAAGTATGGCATGGAACAACTGAGATTACAGTACTCTGAAGAATTTGCTAAACTTGGTAATATACAGTTCTATTTGTGTTCATCTTTTTTGTCATCACAGAATTATTTAATATATCCATTTATTTTTACCATGTTGTAAAAGGGAAACATTTCTACACTCTCTCCAACGCGGCTTCCAGCTACCATAAAGTTCTTGAGGAAAACCGCAAATTATACAACCAAATACAGGACCTTAAAGGTATAATTTTGAATGTTGAAGGAACAGATGCCTGTTATCTATGGTATTTTATAAATTTGAATTTCTTTTCTTATTTTAAACTCAATTTGAATTTCTTTTCTCGCTAGGAAATATTAGAGTATACTGTCGAGTGAGGCCTTTCCTACCTGGACATAGAAGTTTATCAAGCAGTGTTGCTGACACGGAAGAAAGAACAATCACAATAATCACACCCACAAAATATGGGAAAGATGGGTGCAAATCATTCAGTTTTAACAGGGTTTTTGGTCCAGCATCTACTCAAGGTTAAACTTATAAGTTGCTCTGGATTTCCCCTTTTTTTCTCAAACTGTTTTGATTTGTATGGACCACTGAACTTTGCTTCTTTTTTTTTTTTGTTAATGCAGAAGAGGTCTTTTCAGACATGCAGCCTTTGATCCGTTCAGTCCTTGATGGTTTCAATGTCTGCATATTTGCATATGGCCAAACTGGATCAGGAAAGACTTTTACCATGGTAATGAACTGTACTAAAAGAATATTATTTCCATATGTCTGGATTACCTTTTCAAAATTGTTCAAACCACTTTATGAATTTTGTGCAGAGTGGACCGAAAGTTTTGACAGAGGAAAGCCTCGGTGTTAACTATAGAGCACTAAATGACTTATTTAATATTAAAGCACAGAGAAAGGGGACAATCGATTATGAAATTTCTGTGCAGATGATTGAGATCTACAATGAGCAAGTGAGGGATCTCCTTCAGGATGGTGGAAACAGGAGATATCCTTTTCCATTGAATTGTGTTTTTCTTTACCAGTAAAACGTCTTCTTTTTTTCTGTTGTTCTCTTTTTTATCTTAGTTACTATGAAGCATATCTTGTATCTCCTTAACATTAATCTACATTAGAAATAAGAAATACTCCACAGAAAGGGCTTGCTGTTCCGGATGCAAGCATAGTTCCTGTCACATCTACGGCCGATGTTGTTGAACTGATGAATCAAGGCCAGAAGAATCGTGCAGTGGGTTCAACAGCCATCAACGATCGAAGTAGCCGCTCTCATAGGTATGCAATTGCTTCATACTGAGAACTTCCAGAAAACTTCATATTTGAGCTCCGTACTTATGGCTGAGGAATATACATGCAGCTGCTTGTCTGTTCATGTCCAAGGAAAAGATTTAACATCTGGGGCAATGTTGAGAGGTTGCATGCATCTTGTGGATCTAGCTGGTAGTGAAAGAGTTGATAAGTCTGAGGTTGTAGGAGACAGGCTGAAGGAAGCACAGTACATAAACAAGTCACTTTCAGCATTAGGAGATGTGATTGCATCTCTTGCACAGAAAAATTCGCATGTCCCTTACCGAAACAGCAAGCTTACCCAGCTTTTGCAAGATTCTCTAGGTACTATCTGAAGTTAATATGCTAACTTTTCACTTAATTACTACAATATATATTCATAGGGTAACTATTTTATTACAATGTCAGGAGGACAAGCAAAAACGCTGATGTTTGTTCACGTAAGCCCGGAACTAGATGCTGTCGGTGAGACAATAAGCACATTGAAATTTGCTGAAAGGGTTGCTTCAGTTGAGCTTGGTGCAGCAAAAGCAAACAAAGAAGGCAGTGAGGTTAGAGAGCTCAAAGAACAGGTGTTCACTTAACTCCTGATTGCTCATTTATATTAACTATCTAGATGCGGTACTTCCGTTTAGATTTATATAATCATCGTTTTTCTCTGCTCTTGTTTCAGATTGCTACCCTGAAGGCGGCATTGGCTAAAAAGGAAGGAGAACCAGAAAACATTCAAAGCACACAGTCAAGCCCTGACATGTATAGAATTAAAAGAGGCAATGCAATACCTGCCTTCCCTAAAAATAGACAGCCAATGGAAGAAGTTGGAAACTTAGAGGTATTAACTGCTCTTGTACACAAGATCAACTCTTTTTCTTGGAAATCACAAAAATATTTCCTTTTCACGTTGAAGTTTTTTTGTGAGTGCTAGTTATGATTCCAATCAATGTCAAATAGCAAATAACCTACCAAACATTCTAAATGAAGATGGGCTATTTATGCATTTGTACATAAGTTTAGAGTCATTTTGTGAATGATCCAAACAACTCTAAAAATGACCAAAGGGTGGTTCATGGTCTTGTCGAGAGTACTTATGTTTACATTCAGTAGATTTATGCATTTGTACATCCAGTTCAGAATCATTTTGTGAATGGTCTGAACAACACTAAAACTGACCAAAGGGTAGTTCATGGTCCTGTTGAGAGTACTTATGTTACCTTCAGTAGATTATTATTCCTTTTAATCTTTTCACAAGAGAGGTAATAATGTTCATTTAATGAATATTCTATTTCTTTATGTAAAAGGTCCGGAACAATGCCACTCCAATGCAAAAGAAGGCCAGCTTTCATTTTTCTGGTGTCCTCAGTGAGAACAACTCATCCGACTTGGCTCAAAATTGCAATGGCATTCGGAAGACCAATAAAATGGCTGTTGGTAATAATCAATTTGCGAATGGAAATTCCATTCTAGAGCAGGAGCCTGACGCAACTCAGCTTCCAACATTTTTCTACCAAAGATATGATCCCGACAAGCAAAGGCGTAGGGCTGAACCAGTAGAAACTGATGACTCGGATAGCTTTGATGCTGCTACTAGCTCGTCTTCCGACCAAGAAATGTTGCTGTCCACCAGTGGACTCAAAGCTGATGGTATTGCCAGCAGAGGTGCCTTTATTATAAAGAAACCTCAAACAAAGAATACGAAAATTACAGCAACGAAGTAAGTCCAATTTAAATCCTGTATTTTCCATGAAAATTGTGTGCATTGGATTGCTTTAACCTGTTGTGCTGCTTTGAATTTACTCAGGATTCCAAATCTTGCAATGAAATCGCCAATGTCAGAGAAAAGGCTGCAAACCCCAATCAGGAACAGCAAGCAGCTACCTTTCAGCACTACGGGTGGTGGAAGAAGAACTCCAAATGGCAAAATTAACACTCCAAAATAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA037544