Os06g0607000

From RiceWiki
Revision as of 09:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0607000| Description = Similar to Beta-1,3-glucanase-like protein| Version = NM_001064563.1 GI:115468857 GeneID:4341481| Length = 3202 bp| ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os06g0607000

Description

Similar to Beta-1,3-glucanase-like protein

Version

NM_001064563.1 GI:115468857 GeneID:4341481

Length

3202 bp

Definition

Oryza sativa Japonica Group Os06g0607000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:25004170..25007371

Sequence Coding Region

25004758..25004935,25005115..25006154,25007175..25007258

Expression

GEO Profiles:Os06g0607000

Genome Context

<gbrowseImage1> name=NC_008399:25004170..25007371 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:25004170..25007371 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccccgccctggaactgaggctaccaccaccaccacttctggctgtgaagcggattgtggtgtccctgctatgaaggcgacgttgatgatgatgagttgtcggagtcggagtcggagcgggcgtgctcactggatgctgctgctcttctgcctcctcctcgccttcccttcacatggtcctagagccgtggaagcgtttcccgggggctatgggataaactacgggagaatagcaaacaacatcccttctccggataaagtagtacaactcctgagagcttcaaagataaggaatgtcaagatatacgattccgatcacagcgttcttgatgcattcaagggatctgggctcaatctggttatcgccatccccaatgagctcgtgaaggattttgcggcgaatgagagcaggtcgatcgactggctgaatgagaatgtgcagccctatcttcctcagacacgcatagttgggatcactgtgggaaatgaggtgctgggaggtcaagatacaagcttggccgagcccctcgttcaagctgtgaagaatgtctataatggactcaagaaatttcacttgcaagacaaaattgagctattcacaccacactcagaagctgtttttgctacttcatatccaccttctgcatgtgttttcaaggaagatgtcatggtgtatatgaaaccactgctggacttctttcaacaaattggctcacctttctatgtcaacgcatatccctttttggcctacataagtgatccagaacatattgacattaattacgctctcttcaagcccaatcctggaattgttgacccgaatactagtctgcattatgataacatgttcgatgctcagatagatgcagcttatgctgctctgcaggccgctgggtatagagacatggaggtccgagtagcggagactggctgggcttctagtggagatcaaactgaggcaggagcttcagttgagaatgcaaggacttacaatttcaacctccgaaagaggctctttctgaggaaaggaactcctctcaagccaaagagaccagtcaaagcatacatctttgcgttgtttaatgagaattcgaagcctggacctagctcggagaggcactatgggctgtttaatgctgatggaaggattgcatatgatattggttatgagggtctattaccttcatctgcaccctcgtacttcttgtctcttaggaaaattcaagctgggggttggattgtacactattcggctacagttattttatctgttttcattttcttagccttagtgacttga</cdnaseq>

Protein Sequence

<aaseq>MPRPGTEATTTTTSGCEADCGVPAMKATLMMMSCRSRSRSGRAH WMLLLFCLLLAFPSHGPRAVEAFPGGYGINYGRIANNIPSPDKVVQLLRASKIRNVKI YDSDHSVLDAFKGSGLNLVIAIPNELVKDFAANESRSIDWLNENVQPYLPQTRIVGIT VGNEVLGGQDTSLAEPLVQAVKNVYNGLKKFHLQDKIELFTPHSEAVFATSYPPSACV FKEDVMVYMKPLLDFFQQIGSPFYVNAYPFLAYISDPEHIDINYALFKPNPGIVDPNT SLHYDNMFDAQIDAAYAALQAAGYRDMEVRVAETGWASSGDQTEAGASVENARTYNFN LRKRLFLRKGTPLKPKRPVKAYIFALFNENSKPGPSSERHYGLFNADGRIAYDIGYEG LLPSSAPSYFLSLRKIQAGGWIVHYSATVILSVFIFLALVT</aaseq>

Gene Sequence

<dnaseqindica>589..766#946..1985#3006..3089#aaccccccgcgacacgcgcaccaccaccaccccccacccacctccgccgcgtttcaaaattcccaaaccccccctcccctccccttctctcctccgctgcgacggcggtgagcgagccacccccggagtcggcgcgggcggcgtgctcctcctcctcctccatccatccaaatagtaccccccccccaatctcctccccgctaagcaaacccccctaatccttccttaaccccacccttcttgcttgcttcgctgctgctgcttcgcttggttggttggttatatttagtagtccgcgagaagagtggagttgtgactaggtgtgtgcttaccactgggaggaggaggaggaggaggagttgtggactataacgagcgggaatcgagattccttcgtgttggtgttgttgttgttggtggtggtggtggtgcgttggttgattggtcggcggcgggagggatccggttcttgcggattctttaccgttcttggtgaatccgtggagaaggcggcgggccaagattgctcggaggtgctcggccgtggcggagcggtggtccgtctatggaacttgccgccgcggcgccatgccccgccctggaactgaggctaccaccaccaccacttctggctgtgaagcggattgtggtgtccctgctatgaaggcgacgttgatgatgatgagttgtcggagtcggagtcggagcgggcgtgctcactggatgctgctgctcttctgcctcctcctcgccttcccttcacatggtactgaaattttttttcccatctttccatccaattcaactcaattctcttgccaattctctttcttgaccagttattgagcctttcatgctttcgattgcgatgcctagaaaaaaaaataattccttgatttggtattaatgatatgaaatttgattgttggtatttgttgtgacaaggtcctagagccgtggaagcgtttcccgggggctatgggataaactacgggagaatagcaaacaacatcccttctccggataaagtagtacaactcctgagagcttcaaagataaggaatgtcaagatatacgattccgatcacagcgttcttgatgcattcaagggatctgggctcaatctggttatcgccatccccaatgagctcgtgaaggattttgcggcgaatgagagcaggtcgatcgactggctgaatgagaatgtgcagccctatcttcctcagacacgcatagttgggatcactgtgggaaatgaggtgctgggaggtcaagatacaagcttggccgagcccctcgttcaagctgtgaagaatgtctataatggactcaagaaatttcacttgcaagacaaaattgagctattcacaccacactcagaagctgtttttgctacttcatatccaccttctgcatgtgttttcaaggaagatgtcatggtgtatatgaaaccactgctggacttctttcaacaaattggctcacctttctatgtcaacgcatatccctttttggcctacataagtgatccagaacatattgacattaattacgctctcttcaagcccaatcctggaattgttgacccgaatactagtctgcattatgataacatgttcgatgctcagatagatgcagcttatgctgctctgcaggccgctgggtatagagacatggaggtccgagtagcggagactggctgggcttctagtggagatcaaactgaggcaggagcttcagttgagaatgcaaggacttacaatttcaacctccgaaagaggctctttctgaggaaaggaactcctctcaagccaaagagaccagtcaaagcatacatctttgcgttgtttaatgagaattcgaagcctggacctagctcggagaggcactatgggctgtttaatgctgatggaaggattgcatatgatattggttatgagggtctattaccttcatctgcaccctcgtacttcttgtctcttagggtaaggactgcatttttaatcttttgttttgtctacaccttttctgtattttcttgttaaatcattcttgccttgtgttaaaatgaggatatgtctactcaattgttaaaaacggtcatttcatacaacatagaactattgaatactctgattttattgcatgtttccaggcaacatcatgtcccaaccattttgctgggcctttaatcatccagtgttattttgcaggaaaacgtatgataggttttaatcctaattttggtttcttaaatcctcatcaaagtatcaaacgaattttggtattagaaactagaaagttgcacaatggatcatgttggtctagatttttagatgatacttctgtgcttgactaatatccttgtgtgagcattcattgtggtttgtatgctttcacttcttccctatatttgttcttattttcggttttttcaaataaaattgcatggagtttccagttcagaataatgttgacaataatgagatacctgtctgagtttatcattacttaaatgctaatacgtcttccagttgtgatgggccaattaactcctttaatagatcactaggacacacattatggataaccttttataatccggattctaggttaaattatcagtaagattgttgtattaaactattgagagtggtggtgatctttaatgttcatattctgaatgctctagccttttccccgcctttttttgagacccttatcgaagaacttttcaaagatctttggtctatttcaataatcaattctggcttcatatactttacccttaagtaataattggcaatgggttgcattggaatcactttggttttggacaatttgtaataaaattacccctggtagcgatacaaaacttctaatttgtgttttcaacttattcccatgaaatagtgctatctctttcttgcttatgtttggtttctgataccagagcattagttactgcaaaaggtaatctgacttgatgtcatttctatctgcagaaaattcaagctgggggttggattgtacactattcggctacagttattttatctgttttcattttcttagccttagtgacttgattacagaatagcacatctgtattgaacatacaaccgaggttaagtgttagaacaatgtgattgggaattttacaatgaaagatgaaataatagctcccttcgcaccagttctt</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0607000, RefSeq:Os06g0607000