Os09g0513800

From RiceWiki
Revision as of 07:32, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0513800| Description = Similar to ARIADNE-like protein| Version = NM_001070189.1 GI:115480120 GeneID:4347561| Length = 5472 bp| Definition...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os09g0513800

Description

Similar to ARIADNE-like protein

Version

NM_001070189.1 GI:115480120 GeneID:4347561

Length

5472 bp

Definition

Oryza sativa Japonica Group Os09g0513800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:20654732..20660203

Sequence Coding Region

20655005..20655040,20655744..20655865,20656116..20656218,20656352..20656442,20656668..20656840
,20657054..20657155,20657242..20657330,20657501..20657608,20657703..20657793
,20657980..20658069,20658515..20658562,20658741..20658812,20658889..20658982
,20659058..20659202,20659517..20659787

Expression

GEO Profiles:Os09g0513800

Genome Context

<gbrowseImage1> name=NC_008402:20654732..20660203 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:20654732..20660203 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ggccgacgaggtcgtctccacgcgcgagcaggtgctagatatgttgtgttgaccgaagatgatatacgcgagcgacaagaggaaatgataagccgtgtgtctgcaatattttcagttccaagggaatcagcatgcgtcctccttcgtcactacaaatggagtattagcaagctaagtgatgactggttcgcagatgaagaaaatgtccgccgttctgttggcttgccatcaaatgttgttcatgttcctgactgtcctgagctaacttgtggaatatgttttgaaggatgtgctgcaaatgcaatgagctgtgctggttgttcccatttctattgtcatgaatgttgggaagggtatattagtgctgcagtaaatgatggtccagggtgtttggtgttgcagtgccctgaaccatcttgtgatgcaatcgttcttgaagatatgattaatagtctgacgaaagatgaggataaagtaaagtatgcacgatttgtattatggtcatatattggagttaacaacaagataaaatggtgtccagctcctgattgtacctgtgcagttgagtttcttggtgatggtaactatgatgtctcatgcaaatgcaaattcagtttttgctggaattgtgcagaggaagctcatcggccagttagctgtgacacagtctcaaagtggatactaaagaacagcgcagaatctgaaaacatgaattggatattagcttattctaagccctgtccgaaatgcaaacgacctatagagaagaatcagggatgcatgcatatgacatgcactcctccttgtaaatttgagttttgctggttatgcctaggtgcatggtcagatcatggagatgggactggtggcttttatgcttgcaatcgttatcaatcagcaaagatgggaggcatgtatgatgaggctgaagcaaggagagagagagctaaaaattcgcttgagagatacatgcattattatgagcgctgggcgtccaatcaaacatcaaggcagaaagcacaagcagatctgcaaaaagttgaaaatgaagatcttacaaagttaagtgatgttgttggtataccagagacccaactaaagttcatacctgaagcttggtcacagatcatagaatgcaggcgagtgctgaaatggacatatgcttatgggtactatctacacaacaaagcgaagagtgatttttttgtgtacctccaaggtgaagctgagtctggtttggagcgtcttcataaatgtgccgagaaggatatgcgtgaatttttacctacagcggattccactcaaccttctctttcattgcaagacttcggtgaatttcgtgtgaagctttctggtctaacaagcgtaacccgcaactacttcgagaaccttgttcaaacactggaagcgggtctgcaggatgtccgcgctacagaccaatcagcttcagtcagtacctccagctccaagaagcctcccaccaacaccaaggggaagtcagggcggagtaaggtggcgagaacatcgcaggagcgctcaggcgacagatggccatgcgaccgctgcactttcatcaacccgtcctctacgaactcatgcaacatgtgcggcaggaacaagccccgccgcagatag</cdnaseq>

Protein Sequence

<aaseq>GRRGRLHARAGARYVVLTEDDIRERQEEMISRVSAIFSVPRESA CVLLRHYKWSISKLSDDWFADEENVRRSVGLPSNVVHVPDCPELTCGICFEGCAANAM SCAGCSHFYCHECWEGYISAAVNDGPGCLVLQCPEPSCDAIVLEDMINSLTKDEDKVK YARFVLWSYIGVNNKIKWCPAPDCTCAVEFLGDGNYDVSCKCKFSFCWNCAEEAHRPV SCDTVSKWILKNSAESENMNWILAYSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWL CLGAWSDHGDGTGGFYACNRYQSAKMGGMYDEAEARRERAKNSLERYMHYYERWASNQ TSRQKAQADLQKVENEDLTKLSDVVGIPETQLKFIPEAWSQIIECRRVLKWTYAYGYY LHNKAKSDFFVYLQGEAESGLERLHKCAEKDMREFLPTADSTQPSLSLQDFGEFRVKL SGLTSVTRNYFENLVQTLEAGLQDVRATDQSASVSTSSSKKPPTNTKGKSGRSKVART SQERSGDRWPCDRCTFINPSSTNSCNMCGRNKPRRR</aaseq>

Gene Sequence

<dnaseqindica>274..309#1013..1134#1385..1487#1621..1711#1937..2109#2323..2424#2511..2599#2770..2877#2972..3062#3249..3338#3784..3831#4010..4081#4158..4251#4327..4471#4786..5056#aaaaggaaccccaccaccgctcttccgcgcttcgcttctctcgccgtctcgcggctgcgcggcgcggcgctctcatccatcccctcctcccgcttcccccacccgccgcccgatctcgacggcggatcgccccgggatgggctccgacgaagacgagctgctcgacgacgaggagtactactactactgcagcgacggggagtgtagcggcggcgggagcgggagcgacgaggatgaggagttcgggggccgcgggagcgacgagggctgtgaggccgacgaggtcgtctccacgcgcgagcaggtgctgtctgtgaattgcgatcaatgcccttgcgtgtttcgttccgtcgttcaaatgagagaggcccccccttttcggatttctggatagcgagtggcgctgctgttgtggtgatggtgatttgtggctttgatgctgattcggttttgggtgcgagaatcctgcgtgttctgtggtaattcgacgttctgagcgacaggtgcaatgcgatgtacgagtggtttatgcttgtatggtgatggtgattagtgtctttgatgatgatcggttttgggatcagaaaccctcgcgtattctgtggtcatttgatagaatttctgggaaacaggtgcaatgcgatggtggtgtgcttagagtcgcagcgaaatttgttcatggcttctctgctttacagatagcaaaacgtttcatccttcggggaaaaaaatagcaaaacatttaccaagatctcaatagattatagatatgatgttttctcttcataaattgtttcgatagcttggatggttgtttactctacagattgagagtttgagactgctattttccttctctgcattgtatgtcattaacgtaattgtgttttggtccttttgttcatgctgccctgcctttctgtttctctattcttaattcttgtatacttggtgtcagaactaactcaaaatctcaaatgggcctcttctgtgttcattttcttatgaacagagatatgttgtgttgaccgaagatgatatacgcgagcgacaagaggaaatgataagccgtgtgtctgcaatattttcagttccaagggaatcagcatgcgtcctccttcgtcactacaaatggtcagtgccgccgctccagcagctcgtcctttctgaacacactctactgttttatttccgttgtagtgaatttgagaagcccatctcatgtatctcttgtttacaagatgtactgcaaatgctttgtgtagttatatgtatatgtaatagcattttcttactgctggcctgccacaaaggtaggatgcttttgagctaaactagaagatccttttctatgttaacaatgtatcttcattttgttgttcaggagtattagcaagctaagtgatgactggttcgcagatgaagaaaatgtccgccgttctgttggcttgccatcaaatgttgttcatgttcctgactgtcctgaggtagaattacattcctaaaagatatggagcttcattgggtttttttttatcatattgtatcatatctggtttgaattggtgactaatgtagttaactgcatgttgtaatttctatttgtttctttggttgcagctaacttgtggaatatgttttgaaggatgtgctgcaaatgcaatgagctgtgctggttgttcccatttctattgtcatgaatgttgggaaggtctatctgtctctctctctctctctccatcactcatttttacattataagttctttgtgacttcaagattttgttattttacttgtaacattacgaattgattgctattgtaactataacaaattgatagatgactttgttgttctcactttcagtagtttgtagcattcttgttcttaaaagaattctgaaatttatggtgctaaaatgaggtaaattttcagggtatattagtgctgcagtaaatgatggtccagggtgtttggtgttgcagtgccctgaaccatcttgtgatgcaatcgttcttgaagatatgattaatagtctgacgaaagatgaggataaagtaaagtatgcacgatttgtattatggtcatatattggagttaacaacaaggtaattctttaaagtactcagcgctcataatggttcacattatcgttctcccaattatgtttattaaaccttactgtattgcccatcagatagtagtactatttactatttactatatagttggtatatacttgcttatatttatgccaagtgtcaccccaaatggttttcaaaaaaacatatttctgaagtaataaaaattaattcctgcagataaaatggtgtccagctcctgattgtacctgtgcagttgagtttcttggtgatggtaactatgatgtctcatgcaaatgcaaattcagtttttgctggaatgtcggtatttctttatttatttatttacttgtatacctttcagattgattgtttgatattaccagttaaatctttggtaaatgcagtgtgcagaggaagctcatcggccagttagctgtgacacagtctcaaagtggatactaaagaacagcgcagaatctgaaaacatgaattggtttgtcgcacacataatttccttttcattcttgtatttgatagtatgtcttgtactttattctttccatcttgaatatttcttgtgtaaaatactttttttctttttaatttcctaagttcataaggaaaaactggaagctgtttctcaagtgttgttttctcccccaggatattagcttattctaagccctgtccgaaatgcaaacgacctatagagaagaatcagggatgcatgcatatgacatgcactcctccttgtaaatttgagttttgctggtaagcttccctctcggcatatttgttttgatggtgattgtgtacattttgcattgaaattgtttatctttggtctgattttccatggttgcaggttatgcctaggtgcatggtcagatcatggagatgggactggtggcttttatgcttgcaatcgttatcaatcagcaaagatgggaggcatggtatatttcatcttggatactgtattgtgcaagaagaatcgtgatttttaccttgctagaataagcttttctattgctacctattcatgtgtttgctctagtcttttatactactttgctgtgtatttaatttatttgttttccttcatgccaataatctcttgtaatgttttcctcatgtttcagtatgatgaggctgaagcaaggagagagagagctaaaaattcgcttgagagatacatgcattattatgagcgctgggcgtccaatcaaacagtatgtctaggatccagtcactttacatagtctttatctgattttttatggtattcatgcttctacatgcccttttgattttcatatggaccatgtaatgtgtatagtaagctcattaggttggagacttttagttttgctgactggaaggatctaatttcatgttgctgctgcaaagtacagcgtctggcactaatgtccttggcaaatcagttgtctacttacttttcattttatatttaccatccaatattatgagtggtaaacacatacacagtgctttattttatatttatctttctcatactttcataacaattttccacaatgctgtatatttccattcaattttcgcatacataatgtgaagggtctgccataaatttacattttagctgtacttttatgtatgatacattttctgttttcttttccctgttggcagtcaaggcagaaagcacaagcagatctgcaaaaagttgaaaatgaagatgtaagttttacattggaccatgtgtacagcatttgtgggtcatagcagaagtttgattttattaatacttgtagcaaaactcactgttttggcagtccttttatcagttgtaaatacttttagtttggacttctgtgatgtttcagttttgcgtttgactattttctcatgtgtatagcttacaaagttaagtgatgttgttggtataccagagacccaactaaagttcatacctgaagcttggtcacaggttagatattataaatcattttctattgcccattgactgtttatgtaatttacatgttcattattcgttgtgacagatcatagaatgcaggcgagtgctgaaatggacatatgcttatgggtactatctacacaacaaagcgaagagtgatttttttgtgtacctccaaggtagtagataatttctgccttgccaagtaggcgcttatgcatacttgacggctgtacatgttttaaaatttataggtgaagctgagtctggtttggagcgtcttcataaatgtgccgagaaggatatgcgtgaatttttacctacagcggattccactcaaccttctctttcattgcaagacttcggtgaatttcgtgtgaagctttctggtctaacaaggtattgcagagatatcttcactcatcatcacttcagtgaatttttgtgaatgtatttgccgttaattttgtaatttacttggatctgaagggcacacgcttgctccaaccatcactgttatccttgcagtgtcgcttgcttcatgcatgatgcaaatgtatattttccaaatatccatgaactgctcaatatgtcactatgcagtgccaaatttgcttgatcattttattcactataagacttgcatgtttatgagtatgtacagcaactaagcctttttgagaacatgatctaagctaaatatttcattgcagcgtaacccgcaactacttcgagaaccttgttcaaacactggaagcgggtctgcaggatgtccgcgctacagaccaatcagcttcagtcagtacctccagctccaagaagcctcccaccaacaccaaggggaagtcagggcggagtaaggtggcgagaacatcgcaggagcgctcaggcgacagatggccatgcgaccgctgcactttcatcaacccgtcctctacgaactcatgcaacatgtgcggcaggaacaagccccgccgcagataggaagattggtcaaaatgcagttgtgcaaaggaacaccttctcactgggattctggtcgaacaaagtggtgctcatttggcccaacactctggtgctatgaacatgaagcagactctcccagggatctgatgatgctcagaggagatgtaagaaacgaacaatctcaggaatgcagcgcaagaggcttggacaaaattaggtagtagtaaaacatatatgcgtgtgtgttgttagctgtaaatattacttcatggagaaaattaggaaagtaccagcctggaaaatctgcgagttataaaataggattgcatgtgagaatgacatgtggggtcctcacatgtgattgtatttttcaacttcgtgaattcagctatggttcaaattaaaattggcctgtatggatgagtggttccatt</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0513800, RefSeq:Os09g0513800