Os06g0607800

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Revision as of 09:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0607800| Description = Similar to 26S proteasome regulatory complex subunit p42D| Version = NM_001064569.1 GI:115468869 GeneID:4341487| Len...")
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Gene Name

Os06g0607800

Description

Similar to 26S proteasome regulatory complex subunit p42D

Version

NM_001064569.1 GI:115468869 GeneID:4341487

Length

4056 bp

Definition

Oryza sativa Japonica Group Os06g0607800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:25059545..25063600

Sequence Coding Region

25059653..25059761,25060493..25060612,25060836..25060972,25061073..25061234,25061362..25061448
,25061527..25061613,25061972..25062109,25062678..25062869,25062942..25063040
,25063145..25063219

Expression

GEO Profiles:Os06g0607800

Genome Context

<gbrowseImage1> name=NC_008399:25059545..25063600 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:25059545..25063600 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcggagggggaggacgcggcggccgcgcgacgccgcgcggcggccaccgactacaggaagaagctcctcacctgcagggagctcgaggcgcgcgcccgcacggcaagggacaacctgaaaaatgcaaagaaagattttgggaaaaccgaggatgacttgaagtcattgcaaagtgtaggccaaataattggtgaagtacttcgaccattggatagtgaacgattcatcgtcaaagccagcagtgggccccgctatgttgttggctgccgaagtaaagttgacaaagaaaagttgattgctggaacgagggttgttcttgacatgacaacccttaccatcatgcgcacactgccacgagaggttgatccagtggtatataacatgctacatgaagaccctggcaacgtcagttactcagctgtgggtggattgtcggatcaaataagggaacttagggagtccattgaacttcccctgatgaatccaaaattgtttcttcgtgtagggattaaaccgccaaagggtgttctgctctatggtccacctggaactgggaagacactacttgctagagctattgccagtaacattgatgcaaactttttaaagattgtgtcaagtgctatcattgacaagtacataggtgaaagtgcacgtctcataagagagatgttttcctatgcacgggagcatcaaccatgcatcattttcatggatgaaattgatgccatcggtggccgaaggttcagtgaaggaaccagtgctgaccgggaaattcagagaacactaatggagctcttaaaccagttagatggatttgatgagcttggaaaggtaaaaatgatcatggcgactaatcgtcctgatgttttggaccctgcactccttcgtcctgggcggttggacaggaagattgaaattccactgccaaatgagcagtcgaggatggaagtcctcaaaattcacgcagctggtattgctaaacatggtgaaatcgattatgaagctgtcgtgaagctagctgaaggcttcaatggtgccgatctgcgcaatgtctgcactgaggctggcatggctgctattcgagcagagcgcgactatgtcattcatgaagatttcatgaaggcggtgcgcaagctgaacgacgccaagaagctcgagtctagtgcgcactacagcgcggactttggcaaggaatga</cdnaseq>

Protein Sequence

<aaseq>MAAEGEDAAAARRRAAATDYRKKLLTCRELEARARTARDNLKNA KKDFGKTEDDLKSLQSVGQIIGEVLRPLDSERFIVKASSGPRYVVGCRSKVDKEKLIA GTRVVLDMTTLTIMRTLPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELP LMNPKLFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGE SARLIREMFSYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD ELGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEI DYEAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKAVRKLNDAKKLESSA HYSADFGKE</aaseq>

Gene Sequence

<dnaseqindica>109..217#949..1068#1292..1428#1529..1690#1818..1904#1983..2069#2428..2565#3134..3325#3398..3496#3601..3675#tctcgctcgctccgctcttcttgacaaggaagcaaaagccgccgccgccgacgccgacgagagaggagagagagatcgccgccgacgtcgcaggagggggagggggagatggcggcggagggggaggacgcggcggccgcgcgacgccgcgcggcggccaccgactacaggaagaagctcctcacctgcagggagctcgaggcgcgcgcccgcacgggtacgtatgccttcccccattgtttcggcctcttccttccccttgcgcggatgtggattgctcggtgtctagggttttcggcctcttctactggggcggccctcccccgggtagcggtcgcgtgtagaggggggatccggtttccgtgggttgggttaggttgggtagggagggacactgcgactagggttttagctagggtaatctgtttgtcatgtgaagtgaattttggttctcggcgagggtttttgcttatggggtttgtgcttgtgaaagtaatgtgcggtacaggggtttggttcaggcgaaattttgctagtttttcacaatatatgcaactgacagaattgtgtataaaagcaatgtgcgaggtgtatggatcactctgctcttgtcctgttcgttggtgatgttacttggcgcctggcggagtctgtgctgcattttgtataggttgttgttaattcaggagttggtcatgaggacatgcgctaaaacttatatgtggatattcaattggatgttcttttgtgcggggtgatcctttttagttctttgtagcgtgcggaggacattgcattttgtgttgtgaagtgtcaaggtggtcagatttttggtgtattcaagctttcacattttgtgttaatttttttaaaaaaatttataaccgtatttgcttgtactttggttggcttgatcttatttgatggcccttttttatttgattgcagcaagggacaacctgaaaaatgcaaagaaagattttgggaaaaccgaggatgacttgaagtcattgcaaagtgtaggccaaataattggtgaagtacttcgaccattggatagtgaacgatgtaagtgaaaagttcccttccattgatctttgacaatatatttcctgtacaaataatagcataaaataggtgctgcatgcttatcatcaccaaatttatcattttgttgtttgttcttagttacataactttccactcatggtagtaaacctttaatttcttctcaatcgagtaataatttagttatttgtagtaaatcagctgaaaactttctttattgcagtcatcgtcaaagccagcagtgggccccgctatgttgttggctgccgaagtaaagttgacaaagaaaagttgattgctggaacgagggttgttcttgacatgacaacccttaccatcatgcgcacactgccacgagaggtatataagtgatttttcatttgcaaattactataggtgtataaaaaatatcgatgttacgaataatggaggcaaaaccgtaccttttccctctgctcaggttgatccagtggtatataacatgctacatgaagaccctggcaacgtcagttactcagctgtgggtggattgtcggatcaaataagggaacttagggagtccattgaacttcccctgatgaatccaaaattgtttcttcgtgtagggattaaaccgccaaaggtaacataaggaacaaagtgtcctttttaaataccatattattcatttatttcaaaaagagatgtcgatgcaatcttcaagatccttggatgtactaatgaagtatgcaactttttactcactgaagggtgttctgctctatggtccacctggaactgggaagacactacttgctagagctattgccagtaacattgatgcaaactttttaaaggtctgtttttttttaatgtttagcaaccatttcagacatgctagatatatgtttaactgatgtgtacttttaaaacagattgtgtcaagtgctatcattgacaagtacataggtgaaagtgcacgtctcataagagagatgttttcctatgcacgggagcatcaagtaagttcattttgttttgttactgtgtacctaataagttttaaatggtccatctatcttggtacatactcttaatgtagtgagggaagcaggaagttgccaaaggtgtaaaactgaaaaaataattgttttttctgcggtttttaaatgcctggaatattctttgtatgctcccttttcaaattcaaacaaattagtaaatgagagtgcctcagctcttgatgtactctgccagaaaacaaaggaaacacattagttgtcatgtatatcatgtatgcatttgtccacttctctacttaataaccagtctacttatattaatcatttgtgctacttttgttttgaactttttgtttagccatgcatcattttcatggatgaaattgatgccatcggtggccgaaggttcagtgaaggaaccagtgctgaccgggaaattcagagaacactaatggagctcttaaaccagttagatggatttgatgagcttggaaaggtacacatcttttactgaatagcattagttatgcataggcatgtagtaaattactgctaatgcaaatgattttgtgttgatgtgcatcataataaggttgtatgagcatgtgcatatacaagctgatacagtcacacacggtttctattgcttgtgattggcaattgtacaatacttgaataatagcatgttttgttctgccgtctttggtaacgtgacgcattattttgtccattgatcagagtactgatttagatttggaaacatatgtttgtttaagtttggttccaccaatcagctgcacaatcaactttatccgagttgcttcttgtaaacctcttttatttcctttgtgttaagattgattgactagctgatagcacatttgatctacatcagtatggaaatgtaattttggtatacagattccagataagagtgctagtttcaaaccatttggaagtccttgatggttgtcactgattcctttaatatgatgtggaaaactgtatgtgactcctggtattgcatggattgtgtgtaacagaattttcctacttttatacaggtaaaaatgatcatggcgactaatcgtcctgatgttttggaccctgcactccttcgtcctgggcggttggacaggaagattgaaattccactgccaaatgagcagtcgaggatggaagtcctcaaaattcacgcagctggtattgctaaacatggtgaaatcgattatgaagctgtcgtgaagctagctgaagtgagttaacctacttaacctgagcatggtaaaatcttgttttgcattttgttctaactgaggctgttccagggcttcaatggtgccgatctgcgcaatgtctgcactgaggctggcatggctgctattcgagcagagcgcgactatgtcattcatgaagatttcatgaaggtgggttatcacaaacacttctcttctgtctgtctctgcatcaaaacacaaggttagttcatagttctcaccatttctatctttgtgacgaaaaatggtttcaggcggtgcgcaagctgaacgacgccaagaagctcgagtctagtgcgcactacagcgcggactttggcaaggaatgaggctgatttggtgatgtgctgacttctttttttttctccatgggggaggaactgtcatgctgatcctactcctcacttgcaaaaatcctgcgatgatgatgatatacacgccaaattgaattagaaactgatccctctgaggtcaacctgacaaggagttgtgatcctgtcttctatttattgtacttcttgtaactttgggcatactcctatatgggatgattaattcgatttcatttattcccacaagcggctctgttcttcacgaatgattggacagattatggacgattgcttatcataaacctacaaataggttaaaacaaagttctaagcaatattgatgttgaatttattttcaagaaagttaagtcgtatctg</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0607800, RefSeq:Os06g0607800