Os01g0141100

From RiceWiki
Revision as of 18:44, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0141100

Description

Similar to Salt-induced AAA-Type ATPase

Version

NM_001048518.1 GI:115434449 GeneID:4325480

Length

7151 bp

Definition

Oryza sativa Japonica Group Os01g0141100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:2214662..2221812

Sequence Coding Region

2214923..2215048,2215131..2215286,2215371..2215469,2215557..2215631,2215732..2215800
,2216515..2216713,2220162..2220237,2221121..2221271

Expression

GEO Profiles:Os01g0141100

Genome Context

<gbrowseImage1> name=NC_008394:2214662..2221812 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:2214662..2221812 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ttccgagcagtccaagctgagggctggactcaactccgccatcatcaccgagaagcccaacatcaagtggaacgatgtcgccggcctcgagagcgccaagcaagcgctgcaggaggccgtcatattgcctgtcaagttcccgcagttcttttgtatggtccaccaggaacaggaaagtcttatttggctaaagctgttgcaactgaggctgattctacatttttcagtatatcttcatcagaccttgtttcaaaatggatgggagagagtgaaaaacttgttgcaaaccttttccaaatggctcgagaaaacgctccttccattatcttcattgatgaaattgattcattgtgtggtcaacgaggagaaggaaatgagagtgaagcttctaggagaatcaaaactgaacttcttgtgcaaatgcagggtgttggccataatgatgacaaagtactggttcttgctgctacaaacacgccatatgctctagaccaggctgtgcgccggcgctttgataaacgtatttacattccactacccgacctgaaagcaaggcaacatatgtttaaggtccatctcggggatacaccacacaacttaaatgaaagtgattttgagaacttggctcgtcgaacagacgggttttctggttcggatattgctgtttgtgtaaaggatgtgttatttgaacctgtccgcaaaacacaggatgccatgttcttctttaaggctgatggtgatatgtggatgccttgtggaccaaagcaatctggtgccgtacaaacaaccatgcaggagctcgcatccaagggccttgcagcaaagatccttccaccaccaatctcaaggacagatttcgagaaagtcctcgccaggcagagaccgacagtgagcaagaaagacttggaggtgcacgaaaggtttacaaaagaatttggcgaggagggttga</cdnaseq>

Protein Sequence

<aaseq>FRAVQAEGWTQLRHHHREAQHQVERCRRPRERQASAAGGRHIAC QVPAVLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQMAR ENAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTP YALDQAVRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLNESDFENLARRTDGFSGS DIAVCVKDVLFEPVRKTQDAMFFFKADGDMWMPCGPKQSGAVQTTMQELASKGLAAKI LPPPISRTDFEKVLARQRPTVSKKDLEVHERFTKEFGEEG</aaseq>

Gene Sequence

<dnaseqindica>6765..6890#6527..6682#6344..6442#6182..6256#6013..6081#5100..5298#1576..1651#542..692#ctttttttcccctctacatcttccttcccctttcctcctcctcctcgtcttctcctcctccccaccgcgtcaaaccccaccccgaagcaaccgccgccgccgccgaatccgccaccggcgaccccaatccgcgccgccggggcccgatccccactccgatccgccgtaatccggccggcccccccgcgcgcgcgcggccggcggcggcgccgccttcgcccccgatgtacagcaacttcaaggagcaggcgatcgagtacgtgaagcaggcggtgcaggaggacaatgccggcaactacgtcaaggcgttcccgctctacatgaacgcgctcgagtacttcaagacccacctcaagtacgagaagaaccctaagatcaaggaggccatcaccgccaagttcaccgagtacctccgccgcgccgaggagatccgcgcggtcctcgatgaggggggtgggggtggtggcgccaacggcggcgacgcggccgtcgccacgcggcccaagaccaagggtaaggatggggaggggggtggggatgattccgagcagtccaagctgagggctggactcaactccgccatcatcaccgagaagcccaacatcaagtggaacgatgtcgccggcctcgagagcgccaagcaagcgctgcaggaggccgtcatattgcctgtcaagttcccgcagttctttacgggtgagcggctgctgcgaggataaccagtatattttcattctccttgttgtagagaatagaggtgattgcaaaattggtggtggatccgatcgtataggccgtacatggatattgatctcgatcaaaacggatagggcgagtattgttgattgccaacactaatcattccatgttgatggttgctcggtgtgcagggttagctcgcgtaattactgtattttgtttgtagatgactgtttgggtgtcgactatagttcagagtccacttctagagggtgctgggtgcaactattatgttgtgtagtcttggtggaaatcttgaaagttacatcctagaggattgctaaaattgatattaacatgatcttggtactagacaaacaatgtggagtaaaaccataatttacagctagtagtttgaattgaaaggcagttatggaaacaagggaaaaaatgctgctttagtgataggtgcattggttgttacagtgtaatctataatcatgcagcaagttactagcttgacatacattcaattgtttaatcttgcaaatagttattttcaaatattgagggtctgttttcctcgtgcttctagtgaccttcttaatgacttacaagatacagtaagtgaattttctaacagctactaagataaaagtaccattattctcaactctcaaccattgttcaagtgttcatgactaacatcttgcgcatcttctttgttacatgataaatttctccatggtaaacaacgactataaaaaaatgtgtacatgaactcatcttaagtctgggatctggtgttgttagctattttatactaatggagatttctttcttaaggtaaacggagaccatggagggcttttcttttgtatggtccaccaggaacaggaaagtcttatttggctaaagctgttgcaactgaggctgattctacatttttcaggtagttataccctcatatatatacctatatatttcaactacatatcttgacaataaatcctcactcttactaattccattactaaaactcaatgacgtggtgccttttacgttggtgtcatggtagatgttcagttgagttgtgtgttaaactaacattctcccaacatccctaactctttcgctgctacctcactacatgtgtatgttctgaaactgtaatttgtagcatgctttgctctcttttttcagtggtattgaacagcaatcaaaatacttatgtttttgtgattccattttgcacttctgtgtgtactcaagggtttaatgtattcctatgagctattcaaaattcatccagcattttcctttggaaagattatattgagcttttgatacttcctgttgatactgtagtagttttgcagttcatgtcttggggtaccattaaggctttaaaaaactgccaagattccttctctaagtggcaatagctagttagtcttattttttcatgctgcaatttctcttgttgattttttctctatattttttaaagttcaaattatgcagctgttattgtcaatatttatgaagctgcatgtattctgtgtataaatgtatggataatgttcagaattaaatagcttggaacaccagtagtgccttgactcctttctctggataaggtgatgtcctgattcagttgttgccccattgctgcagtgacactcttggtgagcctataagaatgtttctaggcagccaaaatcctaaaaaaaaatgtataattgatgcaggcaagtgagcttttttctcaaaaaagaaaacatttatggaaaactgtgaaagctgtttcttgcaaggtgtgtcctattaatagcagctcttacataactacttttggtttggtcacttttcatgtgtgcaataagctatttttaagccatcaacatcccaaagcttaaagcagatacttattttacacatgttgtataccgagttcgattcatctttctttgtctttgtatagatttgtttatttttagtacatatctaacacctgtgttgtaatgataccatgcgtaacctaaaacggctgttgttttacttcatttgtttttctttgatgtttttgaactaaccaacgtcaaataaaagaaatggagggaatacttattttactgggagcacttgtggtttccttgacatataatagctaatgcatatgtttatagaagaattggtatgttttgatggcatgatgccctggcacattttttctgttttcaaatatgtttaaacattctctagcaattattactcctgatctgaataacttttgtgcattcatttttcgctgctagcatcagttgtcctacacaggatgcttatcccttgatggaactatagagatatagagccaaaatttttatttataataatctataatcctaaaattaaataatcagtaaattagtggtattatttagcaaaatagtaaggacactactggtcacagcatccaggtgtggacgctgtaacaaactgcgtccatcagctggcgcagcccaatgctccccggccaagtccacaagcgtataggtttactcgacctgacacaagcaccggccgcctgctgtcctcctttgtcctcctcaatcgctgcagcgcggtggccccgggcactgtttacaaatttcatacaaatgtttacatgttcatgcagtagacaaagcaatcattgaacacatatttcctgtacctagaataagaatctcaacatttatccatggcagcagcaaaaggagaagatttaactaggtctagttgctatagttgatactagaatttccatgatatttttgagtttagaaggagagatttctactataaatggtcttaataattgtataatgcctgctaaaatagataaattcccctttatcaacctgttctttaaaacgcaaaacatacggagaggctagacttaccttgtaaactgccttcagaaggccacaatgatctttatttagaacaatagcacatactgttgctcaattcttacactgtaccaaaaacagttgagtgatcacttatcagtcatcactgaaatataggcaaataactaatattggttgcatattgaatactaaaggcagtatttgaaatgtccaatgccttctgaggttctgattatcactgtaatatcaaattcagtgtgcagaaccaggttcttatccattaaatggaattgtggcctgcataacaggacattgctcagatataagttcatgttttctacttggttccagtcagaactcataaaagtccctagcccccactgttttttgtttgccagaaaacaactggtttgtggagttcagcgtaaagctagaaatcagtcaatatctttctgaataaattcagaattggtcaaaagctggtttaatccgggacagattgatgtgcaaactaagggtgtgttggtagtggctgttgtgaacttttccctccagcacgtaaaacggagtgactcattagcgcattattaattaaaccttgtttaaaaaaaacttgaaaaatggattaatatgatttactaaagcaacttttctatagaattttttttttgtaaaaaacgcaccgttcagctgtttgggaagcatgcacgtgggaaacgagagagtgaagttgggaaatggcgggttcgaacacagcttaagcagagaatcttgctgcccagaacagtttaacaagaaaatgttgatgttgacatattttctaacccttggtgttgatatcaaaatggatttgagtttagagcattatatggtagtagtaataatgtagtattaccggaccaatgaacattttacacagccacttccaatgcatagctatatggtagtagtaataatgtagtattaccggaccaatgaacattttacacagccacttccaatgcatactaaaagaaagttcatgagacagtcctgtaacagttgacggtctatcatgtatgcattgataattcaatttcgctagcagttccaaagtaataaaaaagttaggtcttttctaatcctaccactagagttctgtagctaaccacacaagcagtttgtattcactgttgaccacacaattcctcaaagattcagttacttgcgatacctatctagcaacaccacatctgatcattgtgtgattaatactgggagtggctacagtccaacgattatttatgtggtttctcatgccacagcttaattcatgtttacaatgatgtgcagacatctgtgaaagagaaactgcagtattccttttcttctacctgattgctccatgatgttgccaatgatcaatatcaatgtataccatattcatttgtattgttcgtgcaatatattttattatgtttcatttaatgtgtttgctttatgcagtatatcttcatcagaccttgtttcaaaatggatgggagagagtgaaaaacttgttgcaaaccttttccaaatggctcgagaaaacgctccttccattatcttcattgatgaaattgattcattgtgtggtcaacgaggagaaggaaatgagagtgaagcttctaggagaatcaaaactgaacttcttgtgcaaatgcaggtgaattttagcttatattattaacttttcttaatcaggtgcctgctacctgaatactttaaatgtgtacttggacgtgttattcttagaatgataatgatcctgaaagttcagagcttcaattggagacgcacaaaatgctgttatatttgaaacttatatagttcgttaaggatcaagttattgaaacagtgcttctaacttgtatatttgaggggcaaaaaggaacatggtatattttcatttcacattttagttctaagatttgttgccacaccgttttagctaatactggcgtactggaccggctacttcctctaataccagtaggtttctagtaccaagtccaaacagagttgtactagtatcaggtgtcttagttagggatattagccaggccagatctgaagctattccatccagatttggaatcataaaagtgaaaacgtgctaaatttccaagtagatcagatgcgaattggctgattagttgctttctagatacatggatattgatgcatggcttgaccgcttgaccataataatcgaataccacatttgatgggcttcaaatactgtccatcttttcttagagcatgtatcatgttattccttgttatctgaagcattccatggtttgttaaactatttagatgccctttttgttacaccaacttacttaccttttgctttgtttcgctggtgaatgtccagggtgttggccataatgatgacaaagtactggttcttgctgctacaaacacgccatatgctctagaccaggtttaagaagatctataaaactgtgttgcaccattcagaactgtcaaaattctcttgttccattgaacaatttagtacttacttaaatccattatctcaggctgtgcgccggcgctttgataaacgtatttacattccactacccgacctgaaagcaaggcaacatatgtttaaggtgcagaattgtccaattcagtttcaagaaaatgtcatgttctgttgttacaatctttggctgagggcaaacctttaatttatccaggtccatctcggggatacaccacacaacttaaatgaaagtgattttgagaacttggctcgtcgaacagacgggttttctggttcggatattgctgtttgtgtaagttgttttctgcaacattctcatgtatccatgctctgttagcatatactgaaatctcgttgctcttttttctttcaacaggtaaaggatgtgttatttgaacctgtccgcaaaacacaggatgccatgttcttctttaaggctgatggtgatatgtggatgccttgtggaccaaagcaatctggtgccgtacaaacaaccatgcaggagctcgcatccaagggccttgcagcaaaggtaagattgattgacatttcctccactgcgcatgttagaagaggcttctgatgattagcaagatttatttcctgttatgtagatccttccaccaccaatctcaaggacagatttcgagaaagtcctcgccaggcagagaccgacagtgagcaagaaagacttggaggtgcacgaaaggtttacaaaagaatttggcgaggagggttgacaagattatgcgcactcacttatgcatagctgctccacagaaatgtatattttatgacttcgattgttctggttggaagttggattcacagatttgtacaattgatagcctaactatgattaattacaacctgtttattgcgttaggctatcattgctcctctgtcgtcaacttatttcatttttactgtcacttatacttgaaattttccacaagtgtattaattaaggaataatacttaacgtggagcccttgtggtgc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0141100, RefSeq:Os01g0141100