Os01g0142800

From RiceWiki
Revision as of 18:44, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0142800

Description

Peptide transporter

Version

NM_001048529.1 GI:115434471 GeneID:4325456

Length

3426 bp

Definition

Oryza sativa Japonica Group Os01g0142800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:2293904..2297329

Sequence Coding Region

2295043..2295154,2295258..2295475,2295558..2296970

Expression

GEO Profiles:Os01g0142800

Genome Context

<gbrowseImage1> name=NC_008394:2293904..2297329 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:2293904..2297329 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggagaggttgcagaagacatctacacccaagatggcaccgtggacgtcaagggcaacccggccaccaagaagaacaccggcaactggcgtgcctgcccctacatcctcgctaacgagtgctgcgagaggctggcctactatggcatgagcaccaacctcgtgaactacatgaagacgcggctcgggcaggagagcgccattgccgccaacaatgtcaccaactggtcggggacttgctacatcaccccccttctcggtgccttcttggctgatgcctacatgggcaggttctggaccattgccagcttcatgatcatctacatcctgggtttggcgttgctgacaatggcgtcgtcggtgaaggggctggtgccggcgtgcgacggaggagcgtgtcacccgacggaggcgcagacgggggtggtgttcttggcgctgtacctgatagcgctgggcaccggcgggatcaagccgtgcgtgtcgtcgtttggcgcggaccagttcgacgagaacgacgagggggagaagcggagcaagagcagcttcttcaactggttctacttctccatcaacatcggcgcgctggtggcgtcgtcggtgctggtgtacgtgcagacgcacgtcgggtgggggtgggggttcggcatcccggccgtcgtcatggccgtcgccgtcgccagcttcttcgtcggcacgccgctgtacaggcaccagcggcccgggggcagcccgctgacgaggatcgcgcaggtgctcgtcgcgtcggcgaggaagtggggcgtcgaggtccccgccgacgggtcgcggctgcacgagacgctcgacagggagtccggcatcgagggcagccgcaagctggagcacaccgggcagttcgcgtgcctcgacagggcggcggtggagacgccggaggacaggtcggcggcgaacgcgtcggcgtggcggctgtgcacggtgacgcaggtggaggagctgaagagcgtggtgcggctgctgccgatctgggcgagcgggatcgtgttcgcgacggtgtacgggcagatgagcaccatgttcgtcctccaggggaacacgctcgacgccagcatggggccgcacttctccatcccggcggcgtcgctctccatcttcgacaccctcagcgtcatcgtctgggtgccggtgtacgaccgcctcatcgtgccggcggtgcgcgccgtgacggggcgcccacgcgggttcacccagctgcagcggatgggcatcggcctcgtcatctccgtcttctccatgctcgccgccggcgtgctcgacgtcgtcaggctgcgcgccatcgctcgccacgggctctacggcgacaaggacgtcgtgcccatctccatcttctggcaggtgccgcagtacttcatcatcggcgccgccgaggtgttcacgttcgtcgggcagctggagttcttctacgaccaggctcccgacgccatgcgcagcatgtgctcggcgctgtcgctcaccaccgtcgcgctaggcaactacctcagcacgctgctcgtgaccatcgttacccatgtcaccacccggaacggcgccgtcgggtggatcccggacaacctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctcagcctcatcaacttcggcgtctacctcgtcatcgccagctggtacacctacaagaagacggcggattcaccggacgacaaggccgagcacgccggagcaaactga</cdnaseq>

Protein Sequence

<aaseq>MGEVAEDIYTQDGTVDVKGNPATKKNTGNWRACPYILANECCER LAYYGMSTNLVNYMKTRLGQESAIAANNVTNWSGTCYITPLLGAFLADAYMGRFWTIA SFMIIYILGLALLTMASSVKGLVPACDGGACHPTEAQTGVVFLALYLIALGTGGIKPC VSSFGADQFDENDEGEKRSKSSFFNWFYFSINIGALVASSVLVYVQTHVGWGWGFGIP AVVMAVAVASFFVGTPLYRHQRPGGSPLTRIAQVLVASARKWGVEVPADGSRLHETLD RESGIEGSRKLEHTGQFACLDRAAVETPEDRSAANASAWRLCTVTQVEELKSVVRLLP IWASGIVFATVYGQMSTMFVLQGNTLDASMGPHFSIPAASLSIFDTLSVIVWVPVYDR LIVPAVRAVTGRPRGFTQLQRMGIGLVISVFSMLAAGVLDVVRLRAIARHGLYGDKDV VPISIFWQVPQYFIIGAAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLST LLVTIVTHVTTRNGAVGWIPDNLNRGHLDYFFWLLAVLSLINFGVYLVIASWYTYKKT ADSPDDKAEHAGAN</aaseq>

Gene Sequence

<dnaseqindica>1140..1251#1355..1572#1655..3067#gttttttgaccaaaactttgctgctcactgtcctagctggagagaatccagcgatacacgcatgtcttcttcttcagctcggtcttggttgccgacctcatttgcagatttctgcacatgaggcatctctctctcgaagtatcgtgttttgatttgggcaggtatgagcaaaggtccctcatttcttcctcttttctaaatccttgaggagagcagtgtgatttaaggtttcagatgccttgaatccgctgtgatttgtctgaatttttgttagttaattgatgcccaatttgttggctgagattgcccctggacaccaactagggagctattgctttaattgatgcccatttgctggctgaggttgcctctgaacaccagctgttgctttagtttgttaggggaaatgttgctttagtgtctgaaatgtttagtcttggcctcttggggtaaattaatatttcagcttaaaattaagatttcagctattgcaatttgcaaggagatatattctttgataaatatatatcttggcatttctgctagataatgctgacgcgtgcctcttctaagaaacttgcagtgttctgcaaactgagagtctgagataagctgataactcatctagtaattgttgttctgaagcaaagggaaatactttctttactgttcataagctctcagtaacttaatctgaggaagcaggtttaaccaaccactgacatcttattaattgctagtgctagagatttgcaaagtttcagataacaaaagtgagcaattgatactaccctcctccactaaagctactttttataccagtttattctgtatctaaaatatctgaacttcagttgactggattcgatttagtaacgagctcaggtagctttctgaaccaacctaactcctgtatttctactctgaatttctgatggattacaactattcctaattattcattggtcgtagtagtcagatggattacaactattcctaattattcattggtcgtagtagtctttcgtcagaagatatatatctgtacataacccaatatcttcctcatcagagacagtcgttgcaaactttgcaggtagccagccactgtgagagtgtgagctgaggtgagcatcgccatgggagaggttgcagaagacatctacacccaagatggcaccgtggacgtcaagggcaacccggccaccaagaagaacaccggcaactggcgtgcctgcccctacatcctcggtaagtaacaacatcttcctcgtcgattgccaagcttgttcgtctccattgatggtgagatataagcgagtgaagtgactgatgtttgcaatggtttgatcagctaacgagtgctgcgagaggctggcctactatggcatgagcaccaacctcgtgaactacatgaagacgcggctcgggcaggagagcgccattgccgccaacaatgtcaccaactggtcggggacttgctacatcaccccccttctcggtgccttcttggctgatgcctacatgggcaggttctggaccattgccagcttcatgatcatctacatcctggtaactaatcgtcttggatttcagtttctgattgctatgatcgatggtgtgatcgaagagagagatgttttgatggttgcagggtttggcgttgctgacaatggcgtcgtcggtgaaggggctggtgccggcgtgcgacggaggagcgtgtcacccgacggaggcgcagacgggggtggtgttcttggcgctgtacctgatagcgctgggcaccggcgggatcaagccgtgcgtgtcgtcgtttggcgcggaccagttcgacgagaacgacgagggggagaagcggagcaagagcagcttcttcaactggttctacttctccatcaacatcggcgcgctggtggcgtcgtcggtgctggtgtacgtgcagacgcacgtcgggtgggggtgggggttcggcatcccggccgtcgtcatggccgtcgccgtcgccagcttcttcgtcggcacgccgctgtacaggcaccagcggcccgggggcagcccgctgacgaggatcgcgcaggtgctcgtcgcgtcggcgaggaagtggggcgtcgaggtccccgccgacgggtcgcggctgcacgagacgctcgacagggagtccggcatcgagggcagccgcaagctggagcacaccgggcagttcgcgtgcctcgacagggcggcggtggagacgccggaggacaggtcggcggcgaacgcgtcggcgtggcggctgtgcacggtgacgcaggtggaggagctgaagagcgtggtgcggctgctgccgatctgggcgagcgggatcgtgttcgcgacggtgtacgggcagatgagcaccatgttcgtcctccaggggaacacgctcgacgccagcatggggccgcacttctccatcccggcggcgtcgctctccatcttcgacaccctcagcgtcatcgtctgggtgccggtgtacgaccgcctcatcgtgccggcggtgcgcgccgtgacggggcgcccacgcgggttcacccagctgcagcggatgggcatcggcctcgtcatctccgtcttctccatgctcgccgccggcgtgctcgacgtcgtcaggctgcgcgccatcgctcgccacgggctctacggcgacaaggacgtcgtgcccatctccatcttctggcaggtgccgcagtacttcatcatcggcgccgccgaggtgttcacgttcgtcgggcagctggagttcttctacgaccaggctcccgacgccatgcgcagcatgtgctcggcgctgtcgctcaccaccgtcgcgctaggcaactacctcagcacgctgctcgtgaccatcgttacccatgtcaccacccggaacggcgccgtcgggtggatcccggacaacctcaaccgcggccacctcgactacttcttctggctgctcgccgtgctcagcctcatcaacttcggcgtctacctcgtcatcgccagctggtacacctacaagaagacggcggattcaccggacgacaaggccgagcacgccggagcaaactgagccacgaggtgaagctgattatgacatacaagggggaattgaactgaattgtggcgtgtgaatgtcagaatgtgtggggttctaaacaagttcttgggagataaaatggaaaggaaattagtgtcgtttgtgaccttcaaatatgttatagtgttcattgcattatgtctggtaggaaaaaatgaagaagaataggaggatatagtagtttaaaaatataaatgtgatgtttagttttctagaaatgcattggccaaagttgttcaagaaataaggtcttctgtggtggagtatctcataagttcattaggttgcagaaatgccattgttcagcagtcagaaagacagcgatttatggg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0142800, RefSeq:Os01g0142800