Os06g0608800

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Revision as of 09:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0608800| Description = contains InterPro domain(s): IPR001841, IPR010734, IPR002035| Version = NM_001064578.1 GI:115468887 GeneID:4341497| ...")
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Gene Name

Os06g0608800

Description

contains InterPro domain(s): IPR001841, IPR010734, IPR002035

Version

NM_001064578.1 GI:115468887 GeneID:4341497

Length

5305 bp

Definition

Oryza sativa Japonica Group Os06g0608800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:25106389..25111693

Sequence Coding Region

25106686..25106766,25106852..25106908,25107441..25107666,25107773..25107900,25107994..25108099
,25108198..25108277,25108428..25108525,25108670..25108783,25108894..25109034
,25109667..25109751,25110444..25110671

Expression

GEO Profiles:Os06g0608800

Genome Context

<gbrowseImage1> name=NC_008399:25106389..25111693 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:25106389..25111693 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggggcaaaggactccaagccctcatacagctattcttcttcatatgatcatgggaattcatcatcgggatataactcgagataccctgcataccctgcaaatgcatcttccagtcagaacacaaggtatgctccttctatggagaactatgtgcagccagaaacgcatgccaggttgcagaggaagtactcgaggattggtgatgactaccgctctctgaatcaagtgactgaagctttggcacaagcaggtcttgaatcatcaaatcttattgtaggcattgattttacaaagagcaatgaatggacaggtaaactttccttcaatcgccgatgtctgcatgatattggaaacactccaaatccatatgagcaagcaatatctattattggaaggacactttcagcttttgatgaagataatttgattccttgctttggatttggtgacgcatcaactcatgatcaggaggtattcagcttttatccagagaaccgcccatgcaacggatttgaagaggcattagaaagatacagagaaattgttccgactcttcgattagctggaccaacatcttttgccccgatgattgaaacagcaattggtattgtagacagcactggtggtcagtatcatgttcttctgataatagccgatggacaggttactcgaagtgttgatacacagtctgggcagttaagcccgcaggagcgtgatacgattgatgctatagtaaaagctagccagttccccttgtctattgttcttgttggggtgggtgatggaccatgggacatgatgcatcagtttgatgacaatatacctgctcgctcatttgacaatttccagtttgtgaatttcacggacatcatgtcaaagagcatagcagctgacaggaaggaggcagaatttgcactatccgccttgatggaaatcccaacacaatacaaggcaacacttgatctccaacttctaggccgtcgccaaagaatacagccaagaattcctctgccgccacctatgaggaatgcttattcgaggtctactagctttgaccaacattctggtgtttattcacgatctagtagcttcggcccacaaacaagtggctttcagcaatctgaaagcttcaaacagagacagcctgtggctaccactgcacctgacacttatacctcggaaagttctttagaaggaagacttttgtgcgctatctgtatggataaatcaaaggatcttgcatttggatgtggacatcagacctgttatgaatgcgggaagaatttggtgcgctgccctatgtgccagcagcatataaccacaaggatcaggctgtactga</cdnaseq>

Protein Sequence

<aaseq>MGAKDSKPSYSYSSSYDHGNSSSGYNSRYPAYPANASSSQNTRY APSMENYVQPETHARLQRKYSRIGDDYRSLNQVTEALAQAGLESSNLIVGIDFTKSNE WTGKLSFNRRCLHDIGNTPNPYEQAISIIGRTLSAFDEDNLIPCFGFGDASTHDQEVF SFYPENRPCNGFEEALERYREIVPTLRLAGPTSFAPMIETAIGIVDSTGGQYHVLLII ADGQVTRSVDTQSGQLSPQERDTIDAIVKASQFPLSIVLVGVGDGPWDMMHQFDDNIP ARSFDNFQFVNFTDIMSKSIAADRKEAEFALSALMEIPTQYKATLDLQLLGRRQRIQP RIPLPPPMRNAYSRSTSFDQHSGVYSRSSSFGPQTSGFQQSESFKQRQPVATTAPDTY TSESSLEGRLLCAICMDKSKDLAFGCGHQTCYECGKNLVRCPMCQQHITTRIRLY</aaseq>

Gene Sequence

<dnaseqindica>4928..5008#4786..4842#4028..4253#3794..3921#3595..3700#3417..3496#3169..3266#2911..3024#2660..2800#1943..2027#1023..1250#acgttcgaagcttcccctgtcactgtccatccatggtggtggtcagacaaccccagcacacaagaaatctgccatttgcccagtccaccgctgggttgcagtttttgatgaagagattgacttgacctgagcacccttccgattgtaaatagcagtttttgtattgctgttggttgagtgattgggcaatcatccaatacatatcttggcttcttggctggactccagtaaccgaggtcgcgtgcctccgctcgctcgctcgctcatcgtcgtcgtcttcctcggggcctctctcgtcgtggagcggaggcgtgccgcgtagcaggggtgagcccatgtgggtggattgatttggggggatttcgtgctgttttggtggaagagctctcttctgtacggtttcttggttgcgctctcgcaccaagaacatctcctttttccttcttgctcctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgggtctcggactctcggctcttgattcttggttcttggtgagtgtaggcgagaataaggcgggttcttggtgggtttataaggtattatttggatctaatccggcgaagaaaagaattcgttgttttttttttctcataggcatttgatatgtttggtaggtcgcattctggtgttcttggacgcacttcgattgttcgatatgttcgatgcttacatggggattgggttgtttcgattgttaatcttgctaattgttcgtgagaagggaatgtggggtgctagattgttcttgggggtggggaattttacctgccatggacagtaattcacccccaccctcaattaggatttcctcaaattatctgcatgatcagtcagaacctgatggtttcttgagatttgtcagaaaagtctctgcttcttgtgcagttattttattaaaagtactgatcttttttgttcccttttttatcagggaattcaactgaggtgagaaatgggggcaaaggactccaagccctcatacagctattcttcttcatatgatcatgggaattcatcatcgggatataactcgagataccctgcataccctgcaaatgcatcttccagtcagaacacaaggtatgctccttctatggagaactatgtgcagccagaaacgcatgccaggttgcagaggaagtactcgaggattggtgatgactaccgctctctgaatcaagtatgtttttgatgacatgaccttgtttaacccatgaattttgatatttgctttgcgggcgtttggtatgcgtgctatcgattactagtagcttagttgaatggcatcagtatcattcatctttgatgatatggcatagggaaatgtttgaataagctatccttttctaggatattttcgaggagggttccaaacaagagttgtattctcttatggaaaccactatatatattgcattaacaaagaaaccactatagattctcaatggagctttctttgactatggtattcatctcagtcagttttttgtacgctggaattcaccctttttagtacacacttttaaatgatttataagatatccagctgctatttattttccagtacattttcagttaatggcttgccatctttaatcatatatgtgttgtttgagccaaagactataacaagctttccatttcctgttatgtctcctacaaaagataattccttgctataatatttatgtgctgttgatgtgcttatcattgtgttcaatttatgtatttttcttagtttcatttccttcatagtgcaccagagtatacgtactactttactagagtcttgaacaatctcttccttttgagtactgtgaacttgagattggaagtacacgttttcatttttatcgatatgtactgttacaggtgactgaagctttggcacaagcaggtcttgaatcatcaaatcttattgtaggcattgattttacaaagagcaatgaatggacaggttaacagaccacttcttgttttgaattctgtttctttatatttgctttgtgctgtgctggtagcctattacttgcgaattagtagtgttattatatacatcttgatttacctattattaggacaaacatccttttctaccttagttgcgtatgatgcaaatgagaaatggcatgtcaacttctcttaattctttgttataaatgagctctcactagggctgctgtctggaaggaggttggactttcttgaaaaaagtttattgagggagttagctactcctaataagctggttatttttctgtatctgaagtgcctgtgatgcaaatggcatgtcaacttctcttaattctttgttataaacccctaataagctggttatttttctgtatctgaagtttatgtgaactacctgttatcttttgacataaggagtgaacctgattccgtaacttcacaacaaatgcaatgtgcaatcttttgccaaacaaaaccatttaaagtaaagaaatgtgaaatggggcaattatgcatgtagcaaggatgcctctcatgttgcttgcatatcctacagtcatgctatgtcacaaatcatagcactctcatttaacctgctgagcttttctccattaggtaaactttccttcaatcgccgatgtctgcatgatattggaaacactccaaatccatatgagcaagcaatatctattattggaaggacactttcagcttttgatgaagataatttgattccttgctttggatttggtgacggtaagttcattgttcccattttccattttgatcacttggtgtgtgctcagtagcatatttaaagaacaatgctgatctaatgcctcctttgtggctttgtctactggcagcatcaactcatgatcaggaggtattcagcttttatccagagaaccgcccatgcaacggatttgaagaggcattagaaagatacagagaaattgttccgactcttcgattagctggttcgtttcagtaatttcacaatttagatgtttattcttcctttatttttttaaagaaggatcttgaatttagctggttatatataagattgcagtagtaactacagatcttcagaaaaataatgtatgcaaaaattgcaacaggaccaacatcttttgccccgatgattgaaacagcaattggtattgtagacagcactggtggtcagtatcatgttcttctgataatagccgatggacaggtctgtcaccattttctcttgttttatcccttttctttatttcttgtctttctaagtaattgtgatcagcagaactcttctctagattatagttgattattttttttgttcaaatcatatttttacagtggctaaaacttctgctaacaggttactcgaagtgttgatacacagtctgggcagttaagcccgcaggagcgtgatacgattgatgctatagtaaaagctaggtacttgatcgagtccctaatttaatatcggtatattctgcccaaatcaaatgtcccgaatcacacgtgttaacatttttttcgaaataaatttccagccagttccccttgtctattgttcttgttggggtgggtgatggaccatgggacatgatgcatcagtttgatgacaatatacctgctcgctcatttgacaatttccaggtgactgttctacatttaatttccagtcattggcttatttttgtgtggttttcacaataatagagacatgtaaaaatgtttgctttcatgcagtttgtgaatttcacggacatcatgtcaaagagcatagcagctgacaggaaggaggcagaatttgcactatccgccttgatggaaatcccaacacaatacaaggcaacacttgatctccaacttctagggtaatccatgttttcccaggactgcactgggtcaaatgtactagagtttgtgcttgcagcaattgtatccatttgaacattttcttcacgttttctttcgtttcagccgtcgccaaagaatacagccaagaattcctctgccgccacctatgaggaatgcttattcgaggtctactagctttgaccaacattctggtgtttattcacgatctagtagcttcggcccacaaacaagtggctttcagcaatctgaaagcttcaaacagagacagcctgtggctaccactgcacctgacacttatacctcggaaagttctttagaaggaagacttgtaagtatttttgtttatattcacaccatgttgaatagataaagtttaagatatatactgcaacactgtagcattggtaaaataaagtttaagctatatactgcaagactacattggtgtcattatcgtacaccaccaacaaatagtctcccttttattttgttcgtactgtggcatttcgggaggctaattgaaacaggggaagttgcattgcattgctctatctgttctgaccaccctgcctgcgttcatttggcttattacttatttcacggatgccctttatgaaaaaaaaaatatcgtgccttcaaatggcccatttgatcttgatctgataactacattatgctgaatattgctattgcatttcacattcttatgtcatttgggcatactgttaatccgcagatcatggaaagttcctacacctctagtgttaagtttttatgtaccatcaaatttcgtgctaaaccctgagaatcttactggattacaaactaaatgcagcttttttttttgtgtgtggtttcagttgtgcgctatctgtatggataaatcaaaggatcttgcatttggatgtggacatcaggtgcagaaaatttccccttattgttctctatttctacataatttcttgttataaatggcagcatgcatgataaaatgattcgcagacctgttatgaatgcgggaagaatttggtgcgctgccctatgtgccagcagcatataaccacaaggatcaggctgtactgagaaaacaaaaatggatatcctgaagtttctgaagcctgcagaaacagaatctccaacatcagaagaaactcctgtgcaaaatttatgaaccagcctaaattgtactgttctttcgtcttgtaattggtggtttactattattattgcagtgagaaatgtttaggcagatagtgatccatataaaaagctaaggcacacactgtagtattaactacagtagttatgtgaagaagaggtacactaaataatgtacagtaattagcttctctattatacattctcctttctttcccttgg</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0608800, RefSeq:Os06g0608800