Os06g0612900

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Revision as of 09:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0612900| Description = Protein of unknown function DUF1680 family protein| Version = NM_001064602.2 GI:297606168 GeneID:4341521| Length = 3...")
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Gene Name

Os06g0612900

Description

Protein of unknown function DUF1680 family protein

Version

NM_001064602.2 GI:297606168 GeneID:4341521

Length

3991 bp

Definition

Oryza sativa Japonica Group Os06g0612900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:25372234..25376224

Sequence Coding Region

25372234..25373003,25373819..25373911,25374010..25374115,25374242..25374438,25374548..25374758
,25374853..25374928,25375002..25375081,25375314..25375409,25375549..25375620
,25375722..25375919,25375970..25376224

Expression

GEO Profiles:Os06g0612900

Genome Context

<gbrowseImage1> name=NC_008399:25372234..25376224 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:25372234..25376224 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtgggcgagcacgcacaacggcacgctcgccggcaagatggcggcggtggtggacgcgctgcacgactgccaggcggcggccggcaccggctacctctccgccttccccgccgagttcttcgaccgcttcgaggccatccgccccgtctgggcgccctactacaccatccacaaggcacgcaacgcaacccaaagcatctgcatctccaccatggccatgaatctcatctgttcgtgcaaatgtctgaatgaaatcatgcagggcctgctggatcagcacacggtggccgggaacggcaaggcgctcggcatggtggtcgccatggccgactacttcgccggccgcgtgaggagcgtcatccagaggtacaccatcgagaggcactggacgtcgctcaacgaggagaccggcgggatgaacgacgtcctctaccagctgtacaccattactaaagaccagaggcatttggtgctggctcatcttttcgacaagccttgctttctaggattgcttgcagttcaggctgacagtctttcgggttttcatgcaaatacacacattcctgttgtcatcggtgggcaaatgagatatgaagttactggtgatcctctttacaaggagattgcaacattcttcatggacatagttaattcttctcatagctatgccactggtggcacatctgtcagtgagttctggtcaaatccaaaacatttagctgaggctctaaccactgagactgaggagtcctgtactacctacaacatgcttaaggtttctcgccacctattcagatggacaaaggaaattgcgtatgcagattactacgagcgagcactgataaatggtgtcctaagcattcagagaggaagagatcctggtgtgatgatctacatgctaccccagggccctggaagatctaaagcagtaagctaccatgggtggggaacacagtacaattcattttggtgttgttatggaactgggatagaatcattctccaagctgggggattctatctactttgagcagaaaggagacaagccagggctctacattattcagtacataccgagcacatttaactggagaactgcaggtcttactgttactcaacaagtgaagcccctcagctcatcagatcagtatcttcaagtctcactttccatttctgctgcaaagacaaacgggcaatatgcaacactgaatgtgagaataccatcatggacatcaatgaatggtgcaaaagcaactctgaatgacaaagatctgcaattagcatctccagggactttcctcacaatcagcaagcagtgggatagtggtgatgatcacttgctactccagttcccaattaacctaaggacagaagcaataaaagacgatcggccacaggtagcatctctgaatgcgatcctgttcgggccgttcctcctcgccggcctcaccaccggcgactgggacgcgaagaccggcggcgccgccaccgcggcgtcggactggatcacccccgtccctgcctcgtacaactcccagctggtcacgctcacgcaggagtccggcgggaagaccatgctcctctccaccgtgaacgacacctccctggcgatgctggagcggcccgagggcgccggcggcacggacgccgccgtgcgcgccacgttcagggtggtgccgccgggctcgagggccgagctgcggcagcgcgccggcgccggcgccggcgaaggcgcggcgaggctcaaggtcgccgcggcgacgatcgagccgttcggcctgccggggacggcggtgtcgaacggcctcgccgtggtgcgcgccgggaacagctcgagcacgctgttcaacgtcgcgccggggctcgacgggaagcccggctccgtctcgctcgagctcgggagcaagccggggtgcttcttggtcgccggcgccggcgcgaaggtgcatgtcggctgcaggacacgcggcggcgccgccgccgccgcagccgcaggattcgagcaggcggcgagcttcgcgcaggccgagccactgcggcggtatcatgcgatcagcttcttcgccagcggcgtgaggaggagcttcctcctcgagccattgttcaccttgagggacgagttctacaccatctacttcaaccttgcagcctga</cdnaseq>

Protein Sequence

<aaseq>MWASTHNGTLAGKMAAVVDALHDCQAAAGTGYLSAFPAEFFDRF EAIRPVWAPYYTIHKARNATQSICISTMAMNLICSCKCLNEIMQGLLDQHTVAGNGKA LGMVVAMADYFAGRVRSVIQRYTIERHWTSLNEETGGMNDVLYQLYTITKDQRHLVLA HLFDKPCFLGLLAVQADSLSGFHANTHIPVVIGGQMRYEVTGDPLYKEIATFFMDIVN SSHSYATGGTSVSEFWSNPKHLAEALTTETEESCTTYNMLKVSRHLFRWTKEIAYADY YERALINGVLSIQRGRDPGVMIYMLPQGPGRSKAVSYHGWGTQYNSFWCCYGTGIESF SKLGDSIYFEQKGDKPGLYIIQYIPSTFNWRTAGLTVTQQVKPLSSSDQYLQVSLSIS AAKTNGQYATLNVRIPSWTSMNGAKATLNDKDLQLASPGTFLTISKQWDSGDDHLLLQ FPINLRTEAIKDDRPQVASLNAILFGPFLLAGLTTGDWDAKTGGAATAASDWITPVPA SYNSQLVTLTQESGGKTMLLSTVNDTSLAMLERPEGAGGTDAAVRATFRVVPPGSRAE LRQRAGAGAGEGAARLKVAAATIEPFGLPGTAVSNGLAVVRAGNSSSTLFNVAPGLDG KPGSVSLELGSKPGCFLVAGAGAKVHVGCRTRGGAAAAAAAGFEQAASFAQAEPLRRY HAISFFASGVRRSFLLEPLFTLRDEFYTIYFNLAA</aaseq>

Gene Sequence

<dnaseqindica>3222..3991#2314..2406#2110..2215#1787..1983#1467..1677#1297..1372#1144..1223#816..911#605..676#306..503#1..255#atgtgggcgagcacgcacaacggcacgctcgccggcaagatggcggcggtggtggacgcgctgcacgactgccaggcggcggccggcaccggctacctctccgccttccccgccgagttcttcgaccgcttcgaggccatccgccccgtctgggcgccctactacaccatccacaaggcacgcaacgcaacccaaagcatctgcatctccaccatggccatgaatctcatctgttcgtgcaaatgtctgaatgaagtcatgaagatctcctgtgcctttcttcttcctctgcatcgcgtgtgcagatcatgcagggcctgctggatcagcacacggtggccgggaacggcaaggcgctcggcatggtggtcgccatggccgactacttcgccggccgcgtgaggagcgtcatccagaggtacaccatcgagaggcactggacgtcgctcaacgaggagaccggcgggatgaacgacgtcctctaccagctgtacaccattactgtaatcgttcttgtcaatcttgatttgtgctgattggaagcacgttttatttcagcgagttaattgtgttgctattatgaatgatctccaattttgggcagaaagaccagaggcatttggtgctggctcatcttttcgacaagccttgctttctaggattgcttgcagttcaggtctgaagatcttaattcccctatggcactctatgttctcctacatgctattcactttgtaattagtaatttattgtacaactaatccagctagaactcgtaatctgacagaatataactcgtaatctttgatgttcaggctgacagtctttcgggttttcatgcaaatacacacattcctgttgtcatcggtgggcaaatgagatatgaagttactggtgatcctctttacaaggtaaaacttatggggcatgttgatttcaagagagaagagagacacatggtccatggtacttcatgatgttgctactataatccacttctatgggtgtccgttatagttttactgaaaagctactatgtcttgcagtgtgtgctttcttgcaaataattgtacacttcaatacttgtggtgaaacttgaatgaatcttggtgcatctgaccataagtcctatttatgaaacaggagattgcaacattcttcatggacatagttaattcttctcatagctatgccactggtggcacatctgtcagtgagttctggtaatgaacttgaatggttgaagttcacagaaatctttttcggtcacttaatgcccaaaatggattttgtcaggtcaaatccaaaacatttagctgaggctctaaccactgagactgaggagtcctgtactacctacaacatgcttaaggtgatttatttgttcatgatcatcaatgatcaaattcctaagtccatttttctttcctagaattagatacaaagtgaaaatacaaagtatgcaggtttctcgccacctattcagatggacaaaggaaattgcgtatgcagattactacgagcgagcactgataaatggtgtcctaagcattcagagaggaagagatcctggtgtgatgatctacatgctaccccagggccctggaagatctaaagcagtaagctaccatgggtggggaacacagtacaattcattttggtgttgttatggaactggtaagtgaacagttagtttcagaagttcagaactgaacagtataatgttaagtgctctgaaaaaacaagtaggattgtaatgttatctactgtctggttttattttcagggatagaatcattctccaagctgggggattctatctactttgagcagaaaggagacaagccagggctctacattattcagtacataccgagcacatttaactggagaactgcaggtcttactgttactcaacaagtgaagcccctcagctcatcagatcagtatcttcaagtctcactttccatttctgctgcaaaggtaaaatttatcttggattttcactgtatgagagagagagagagagagagagagagagagagagagagaaatcaacaatgattagtcttggatcatagtttaatcagtttgatttttgtgacacagacaaacgggcaatatgcaacactgaatgtgagaataccatcatggacatcaatgaatggtgcaaaagcaactctgaatgacaaagatctgcaattagcatctccaggtatgctcataagaattgagagagcacggtaatttgtcgcccataatatgttggaagaactacagatataactctgcctcaatctcgatcttattcagggactttcctcacaatcagcaagcagtgggatagtggtgatgatcacttgctactccagttcccaattaacctaaggacagaagcaataaaaggtatggaattttgagttttattttctattcagcttgaagaaataaatcaaaggtttatcgatcagtaacaaagcccacacacaacaatatatcaaagcaatcgaatactacttgctttccctacttcaacagaccagtatccagaagtcagaatcagtactatccagtgattttgcatttcaccaacatttcggtgaatttgggctttactatcggtacaagaaatgttcatacctgccaaaattttatcccaaattctaatattgaattcagtgtcaattctaagttgacaatcaattaattgttttcacatctattttacttatgttcattatccagatcacctctaccttgtttaattttttttcctaaaaaaatcgaaatgtcaccatattaattttttttgaaaaatttgaaaaatgtacaaaattggaaatagaattcaggataatacgtgctctcatttggaattagtgtgtgtttagttcagcgcaaagtttggattttggttgaaattgaagatgatgtgactgaaaagttttgtgtgtatgacaggttgatgtgatgggaaatgactgaagtttggatccaaactttggatctaaacacagccttaggggcttgcatgtgcttagattgaaaaaaataggggacctgaaccgctgaaaaaaaaactggttgttacatggatagcaaaaaaattgcaaaccaaaatccaatgcatctaagatggtaaattggtaattactactaattaagatgaaccagaattttcacaagagattgactgcaaaatggtttatcttcatcttcagacgatcggccacaggtagcatctctgaatgcgatcctgttcgggccgttcctcctcgccggcctcaccaccggcgactgggacgcgaagaccggcggcgccgccaccgcggcgtcggactggatcacccccgtccctgcctcgtacaactcccagctggtcacgctcacgcaggagtccggcgggaagaccatgctcctctccaccgtgaacgacacctccctggcgatgctggagcggcccgagggcgccggcggcacggacgccgccgtgcgcgccacgttcagggtggtgccgccgggctcgagggccgagctgcggcagcgcgccggcgccggcgccggcgaaggcgcggcgaggctcaaggtcgccgcggcgacgatcgagccgttcggcctgccggggacggcggtgtcgaacggcctcgccgtggtgcgcgccgggaacagctcgagcacgctgttcaacgtcgcgccggggctcgacgggaagcccggctccgtctcgctcgagctcgggagcaagccggggtgcttcttggtcgccggcgccggcgcgaaggtgcatgtcggctgcaggacacgcggcggcgccgccgccgccgcagccgcaggattcgagcaggcggcgagcttcgcgcaggccgagccactgcggcggtatcatgcgatcagcttcttcgccagcggcgtgaggaggagcttcctcctcgagccattgttcaccttgagggacgagttctacaccatctacttcaaccttgcagcctga</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0612900, RefSeq:Os06g0612900