Os01g0199400

From RiceWiki
Revision as of 18:46, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0199400

Description

Alpha/beta hydrolase family protein

Version

NM_001048845.1 GI:115435103 GeneID:4327343

Length

4576 bp

Definition

Oryza sativa Japonica Group Os01g0199400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:5388817..5393392

Sequence Coding Region

5389051..5389467,5389953..5390045,5390281..5390370,5390452..5390516,5391086..5391156
,5391277..5391315,5392918..5393330

Expression

GEO Profiles:Os01g0199400

Genome Context

<gbrowseImage1> name=NC_008394:5388817..5393392 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:5388817..5393392 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagggcggaggaggaggaggggaggagatgatgatgacgtcgggggcgacggggcggatcgtgccggtgttccgctccgtgctgtcgcggcgggcgctgctccgcctcgccgtcgcgctgcactcgctgctcctgtgggtgttcctcctcgtcggcggcggcggctggcggcggaggcggggcgatgcgggggagggggcggaggcggggagggcggtgaggacgcggaggagggcggcggagaaggaggacgtgcggcggaggagggcgctcgcggaggaggtggccatggtggaggacgcggacggggagggggcgaggcggtgggagacgttcgtcgtccccggggcgaggaggaacgcgctcttctgccgcgtctgggcgcccgccgccgccgccgccgagatgaggggtattttggtcatcatacatgggcttaatgagcacagtggaaggtatttgcactttgcggagctgctcacatcatgtggctttggagtatatgcaatggactggataggccatggtggaagcgatggtctacatggttatgtgccttcactagattatgttgtagaagatatagatgtacttcttggtaaaattgtgcttgagaatccaggggtcccctgttttcttcttggtcactccactggtggagctgttgttttgaaggcatcattgttccctcgtatcagagcaaaactggaaggcatcatcctaacttcaccagctctgcgtgtaaaacctgctcatcccattgtaggggctgtggcgccaatattctctctgttagcaccaaagtttcagttcaagggagctaacaagagaggcatcccggtgtcccgcgacccggctgccctgctagcgaagtactccgatccgctggtttacaccgggccgatcagagttcggaccggccatgaaatcctacgcatctcctcctacctgctgcacaacttgaagaaggtcaccgtcccattcatggtcctccatggaaccgcagaccgggtgaccgaccccctggcttcacaggacctctacaacgaggcctcatcgaggcacaaggatctgaggctgtacgatgggttcttgcacgatctgctctttgagcctgagcgtgatgagatcgccacagacatcatcgactggatggagcgaatgctagctctgcaaaccgtgtga</cdnaseq>

Protein Sequence

<aaseq>MEGGGGGGEEMMMTSGATGRIVPVFRSVLSRRALLRLAVALHSL LLWVFLLVGGGGWRRRRGDAGEGAEAGRAVRTRRRAAEKEDVRRRRALAEEVAMVEDA DGEGARRWETFVVPGARRNALFCRVWAPAAAAAEMRGILVIIHGLNEHSGRYLHFAEL LTSCGFGVYAMDWIGHGGSDGLHGYVPSLDYVVEDIDVLLGKIVLENPGVPCFLLGHS TGGAVVLKASLFPRIRAKLEGIILTSPALRVKPAHPIVGAVAPIFSLLAPKFQFKGAN KRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLLHNLKKVTVPFMVLHG TADRVTDPLASQDLYNEASSRHKDLRLYDGFLHDLLFEPERDEIATDIIDWMERMLAL QTV</aaseq>

Gene Sequence

<dnaseqindica>3926..4342#3348..3440#3023..3112#2877..2941#2237..2307#2078..2116#63..475#aaaacgcgcaaaggaaaaaagaaagaaaaagtaaaacgaaggggaggagtcggccggcggccatggagggcggaggaggaggaggggaggagatgatgatgacgtcgggggcgacggggcggatcgtgccggtgttccgctccgtgctgtcgcggcgggcgctgctccgcctcgccgtcgcgctgcactcgctgctcctgtgggtgttcctcctcgtcggcggcggcggctggcggcggaggcggggcgatgcgggggagggggcggaggcggggagggcggtgaggacgcggaggagggcggcggagaaggaggacgtgcggcggaggagggcgctcgcggaggaggtggccatggtggaggacgcggacggggagggggcgaggcggtgggagacgttcgtcgtccccggggcgaggaggaacgcgctcttctgccgcgtctgggcgcccgccgccgccgccgccgagatgaggtgagcacggagggttcggcgatcaatttttccttcggtatagtggtttggattgttgtggaggggatcagtggcttgttttttttgttggcttatggcgatttcgttttcttgttggacacatcgattcaatttttttaaaatcgatcttctcccattggtggattggtgggggaagggcgttttgtggctctgcttttacgcaagaggactacctttttattctcgtctgattcctgtgaatatttttactgtattattattcgtcatttcgttctgaattttaggggatttttgtttcttggtggagagagatcccaggtttcggaattggggtggcgttttgttctcctcgagttggggaattggaagaggcttcttttgtctcttctccaagcgttttcttttggttggttgtaggcttgtagctggtggcagtttcggtcaaatttccagattgttttcgctgaaatttccggtgatctagctgtgaaatgacggttaatttcagttccgattagacattcgtgaagatgagctgcatctggatcataataatttagtggtttgatttatcacggtaggatttgtggcgtaaatcgcattgctgaaactctgttgctgcatctgcgagtctctctgagagagacgtgccgtctaatgcacgtctcctacacacatccggcctcagataccgggcaacgttcttgcattcattgcaccggctaggctgcaattgaagtagttcgccgctgcataatcttgtcttcatccgtggttctgcaattgttaggtaggagtagttcgatataatggtcaaatggacttcttgccaattgtcatactctcttacaaaccagttggctaagtttacgacagcttctgatgcagagtatttttctctctgatggtatgaaatgtttagtgctggtaacttactagtactaatggataagaagagattatagaagctttattcgtgtacctttaggctttagtttaggagaccaatttaagcacaatcgggtagattagcagaatcaaagcgattccttatctcacaacctttgctccattgctatatctttgttatcgttgaaaacgtctgaatgtgatggcttaaactaaagtgaccctgaatagcttagctatcaagaaaaggaggaagcttttttttattcctttgccccaatgttgtataaccaaactgtggattattcttattcccatgacctgctggtttagctctgttcagctgttcacattttaaatgatactgtagtcaaacgctgcattgaacaaagattgaaataggaaccaaccacctttgtttaatacttcaaagtgtagctgatcagctacccttgacgctgctggcaaatttgacaaccctacagctgaaaccttttgaagagtattgttctgttgaagcctcttttgcagcaaagtggaattcttcattagcctgaaccatctatttacgagggtagcatgtgtttcaatgctaatgttaagaacagtttatttttactttgcagtgacactgttgtacaattgcttccactttcaatttatactgatcatttcctctctttactttaggggtattttggtcatcatacatgggcttaatgagcacaggtaaggctatatatcctcttaagtcccccacccaccacacaccttaatatacaatatacatgttctttcctctttgttgtcaaaagaataattaaatactttttgatcccgtatttccagtggaaggtatttgcactttgcggagctgctcacatcatgtggctttggagtatatgcaatggactggataggtgagaactagtttggtttcttggacatgcattattgcctctttcactctttggatggctagttttagtcctacatttaggtaagttacagtggtttgggtcagaatgcacatgaaattagtttttggggttgtttaagtacccattttgtcggacctaatataactaactgagtttttgtgtgagccaaaaagtcattggaaaatatggggattgtctattagaaggagtatgactaattagaaatttagaaccagctaaatatttcatttgatattgaaagtgaagtagtcttattgataacagagtattaccgtttgttatggacaaaagcatgaaattttattcagaatcaacttctagctcatgattctaatgttaccacactctgttcactcacagcacaaattgaccctgcaatgcacacttactaaccaaacacagtaggcaatttcattgattttatccatgcagtttgcatcgctttttgtatcaacaacatctgtttgtttctacttttattttgaacattaacaggctaactctaacatctccatatacaatgtcaggccatggtggaagcgatggtctacatggttatgtgccttcactagattatgttgtagaagatatagtaagtctgaaaatagcaagtctgtcttgcaattattccttcattctgttacttatgaaatattttattatcttcaaacaggatgtacttcttggtaaaattgtgcttgagaatccaggggtcccctgttttcttcttggtcactccactggtggagctgttgttttgaaggtatgccttgtaacaataagtagtttttctcagctctatttaggccaggtttagaaactgaccctactcctctgggcctgtgaataatggatatcgtgacgggcagagcaatggtgcaaagcattaacaaaatagcctggttgaaaacttgaaatggtttggctgcagatatgttcattttacatgcttcatgttcttctttcccttgtgcttatcaatagctggtattttccaggcatcattgttccctcgtatcagagcaaaactggaaggcatcatcctaacttcaccagctctgcgtgtaaaacctgctcatcccattgtaggggtaatgctgctttttctgataccctgtttatttctaaactgtgtttgttttgatggaataagcatcctctaggtcagcaaaagtagattcatctgcataacttgctaaaagaagatcatgaatacctttgaagaactaggtatatttcaattaattaaaacagcttgcaaaattggtttaagcaacttatcatttgccatcttatcaaaccttctgcgagaaactgtggcagttgtattctattcaacgttagaaaaacagatatactatgacctgtatgcgcttattaaaatgattgcattatatatttagaattttccaatctgcacaaactatgcccggcagaaaaacaatctgtacaaaattaatgcttacgagaactacatttaatctcgtccttgatgtgcaaatcttaaaaaattggaccatcttggtttttttttcgacattctgataagtgcataccaactatctgaatcttgcaggctgtggcgccaatattctctctgttagcaccaaagtttcagttcaagggagctaacaagagaggcatcccggtgtcccgcgacccggctgccctgctagcgaagtactccgatccgctggtttacaccgggccgatcagagttcggaccggccatgaaatcctacgcatctcctcctacctgctgcacaacttgaagaaggtcaccgtcccattcatggtcctccatggaaccgcagaccgggtgaccgaccccctggcttcacaggacctctacaacgaggcctcatcgaggcacaaggatctgaggctgtacgatgggttcttgcacgatctgctctttgagcctgagcgtgatgagatcgccacagacatcatcgactggatggagcgaatgctagctctgcaaaccgtgtgaaggagagcagtttgcctgaaaaaggagaaaagaaaaattgtatgataagttaggaaaatggccgtgtatgtcattgatctcattcttgatggaattatctgaaagtgatctacaagcttcaagtggtgattttggttgattgtttcatgtaggactgggtcgaaaactgaaaaagggtttgtgatctgtaattatatatatacacccgcaataatagaattaagatttttaagg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0199400, RefSeq:Os01g0199400