Os01g0225100

From RiceWiki
Revision as of 18:47, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0225100

Description

Smr protein/MutS2 C-terminal domain containing protein

Version

NM_001048992.1 GI:115435397 GeneID:4326736

Length

6944 bp

Definition

Oryza sativa Japonica Group Os01g0225100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:6888424..6895367

Sequence Coding Region

6891689..6891823,6892395..6892474,6892981..6893201,6893626..6893696,6893788..6893844
,6894083..6894150,6894218..6894324,6894455..6894522,6894865..6894987

Expression

GEO Profiles:Os01g0225100

Genome Context

<gbrowseImage1> name=NC_008394:6888424..6895367 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:6888424..6895367 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcttcccttcaaaacatggaaaggtgtttcccgaatgctcaaataaatggcatgagctctccaaacatcttcctaggaaatggactgtctgaggaagtgtcaactgcaggcattgaaaaaagttcataccagtttacagatgaaatgcgaaacatgtcatataatcgttccgataatgagcacggattcttttggggcgagcttcagagaagctacttgaaggttgcatgtgaggagccccactcaacaacatcatctacaagatcaacaagctcgatatctaagacaccacaacaagtgctcgattcactgttcaaaatacctgaacaacgcacatatgaaccaagttccatggactggaagaaggtagttaagaggctgcagtcattcaattctcccatcacatcgaacaatcaagaaaaaccaaaaaatgggaatgggtatcaagaatttcgtactgtcgctggaaggcattatgatacaatgaaaacatattatcagaaagctgccatggcatattccaaaggagaaaaatcttatgcctcctatctcgcagaggaggggaagcattaccgtgaattagctcgcatggaagatgagagagctagcagggaaatatttgaagccagaaataagcatataacgaatacagtgactattgacctgcatgggcaacatgttaaacaagccatgaggcttctcaaggttcacatgatgatttgtgtgtgcatgccaaccacctttcttagagtaattactggttgtggtgtagaaggcacagggaagggaaaaataaagcgcgcggttgccgagcttgtggagaaggaaggcgttgagtggcatgaggaaaatgccgggaccatagtactaaggcttggtggcccaagggagtatcgtttccttgagcatgacagtgactctgattga</cdnaseq>

Protein Sequence

<aaseq>MSSLQNMERCFPNAQINGMSSPNIFLGNGLSEEVSTAGIEKSSY QFTDEMRNMSYNRSDNEHGFFWGELQRSYLKVACEEPHSTTSSTRSTSSISKTPQQVL DSLFKIPEQRTYEPSSMDWKKVVKRLQSFNSPITSNNQEKPKNGNGYQEFRTVAGRHY DTMKTYYQKAAMAYSKGEKSYASYLAEEGKHYRELARMEDERASREIFEARNKHITNT VTIDLHGQHVKQAMRLLKVHMMICVCMPTTFLRVITGCGVEGTGKGKIKRAVAELVEK EGVEWHEENAGTIVLRLGGPREYRFLEHDSDSD</aaseq>

Gene Sequence

<dnaseqindica>3266..3400#3972..4051#4558..4778#5203..5273#5365..5421#5660..5727#5795..5901#6032..6099#6442..6564#gagggagctcaaaagatgaggccttcgaagaagaaatcgaagaagaagaagccctcgccggcggcggcggccggcgcggcggcgccgacgacccctccggcggcggcggatgggggagcggggggcgagtcgtgctcgccgcggtcggaaaccctaaccctagctgctgcggcggcggcggcggcggtggcgtcggagacggagtcgagcagcagctgcgaggcgtccacgtgctcgtcgtcgtcgtcggctttcaaccccgggtcgtcgggggcggcctcgacctcctccctctccgccttctcgtcgtcggcctccaccgcgtcgtcgtcggccgccggcgacgagcggcgcgacatggcgtggctgctggacgccttcggcaccgccacgatcgaccaggtggactccgcctaccgcgaggccggcggcgacgccttcctcgcggccggcatccttggctcctcgcccgaaacgcagccctccccgccaccccggcccccggatctctcgccgcgggccggatctggtggcaggaaggccagcaggaggccgaagaaggtagccgtggctgcgaccgggatggttgcggacgtgatcggtaaggcgtacacgcgacctgccacttcgcccgtaaacaaaacgaacgcgtggaagggcaacgcttggaaggacggaagtggtggcgaccgcaagtatagtgttgaagaggccgagcagttcctgtgctctatgctgggggataattcggagcttggcatgggtgtggtcagagacgtgctcggtaagctgcttttgcctaacaagcgtacctgtaaaaaaatgcattttttttaccgttgtaagagcccagcagagttataatacatcaaagaatgaaataaagatagaaacacttactacacacaacaggagagcatctacgattcaaaagatatattttttcccccaaggaatggttggttcttgtttacaaaaagagaatccaaatgccatccataacattgcacagttcataagccaatctagtgaaaggagcaaatatattgtttgattgaactagaaaatatgatgattagtttttagttttcttattctgggtgcgaatcttgtgttaacttcctgatctgctaatattctatatgaattgttattattactccctccagtcaataatatttgacgttagtgctactactactactactaatcttagctatcccaacacaaaatgttattgattagttggggtattattattatttcaaaatgcttgaaatgaaagggcaataggctgtctatctcgttctcaaatctgtggcaattaggtttgactatgcctcttccagcacagatgtgtctgaggctgtgatggtggatttgggatgaagtcctataggaaggttattcagaggattgattttttgtttgaaacattgtagaagccctgaataaatagagcaagattcttgtatgatcagtcacttggacttgtgttatgccaacatacattgtggtgcaccgttgttctcttaggccaagcattgggatgtgaaggagattgttgcctacggtgattgttttatgctaagttcttgcatgaactaagaatggaagcatactgatttccatcatagatcaacgttctacctttcaatgtcatggacattggctggttttcttacatacatgggtagcgttctgcaggttaaaatcatctatacatttagttgaatagctgcatgtttgtaaatgttatttatatgcggaactgctgcataatttactcacacaactgctgaagttatgttttcgtcatgaaactagtcattggatgaaatttggtgtttgtgtttgtgttgaaagttgatccatttttatggtttcattgaatgtaataccaaatctttcacttttatgcttactaaaactagtggagggcaaaagatttcttttaccttaacattttattatttgtgattggccagtcagttggaagtggaaatgaatcttagtggaatgagtttctgatgttacttccctctattgttcaggtcaatatggatgcgatgttgagaaggtaaaggatttatcttattgggtccatttctcagtgacttccagctatgtttttacgtcctgaatagaaaaagtttgccttttggttggagtagaattttacttttcttcgcgggaactattttcaacttgattcttttcccaaactcaaaacaagcaactatgcatttgtgcaagttagcgcactattccgggaatttccactcattaatcatgcacatttgcaaaaataagttgtcatttttttgcacatgaaaacagccatgcaagtaaatgaaatatttttatggtacatgatgtcatgttgaacacatgcacacatgaaaaatacctttggtaatcatttgttaccaatatccatcatgacttatgacattgcgcagacgataccaatttcttgaatagcgttccagttggtctactgtggctgcgaaagagtgcctttctgctagacacaagatgtggacagtaggaaacacatgccgtagtacatgtggaacatgtctagcctttgcagattgcagtgtcttgtgtctattgacaaaaaaacaatcgatggacatcaaataccatcaacagttgcggtcacttgtgacattgatgagtaaggtggtgatggtacagctgtgttgcacagttcttgtatactggatctaacctggcataatccttttttaatattatcaccttattcttataagaaaatctctccatctaatcatatttgtagtagccagtgtaggtaggtcttgatattctaaaccagattggcttgttctcatgataagttggtcacatcgatataaagttttgtcatatctaggtagggatgcacgtgggtcagcccacagttacccactgatccacaccattttatttgatttcaattgtctacctgatacatactaggaaatgggagagatgttcactttcaagtgattggtgtgggtcaatgagcacccatcagtgggcaaacttgatggtttgtaccgaattttcacatattaaaccaaaaggaaggttgtaaagcaaggattgttatctaggttgcatgaaatctaatcaactagcatttcctcttgtttccctgaaagaattgcatgccgtaagttttcagctatttgttcagaagtttaacaaattgaaatgctttcaggctctggatgcattacttgatatctcgggtatgtcttcccttcaaaacatggaaaggtgtttcccgaatgctcaaataaatggcatgagctctccaaacatcttcctaggaaatggactgtctgaggaagtgtcaactgcaggcattgaaaaaagttcataccaggtgtttacttagcactatctacaatcatatgcagatatgccgtactgaaaatttagactattcttagttcactcatgcatatattagtggttattattgaggtcacagtagttatcttttttacaaattatattagtgtgggacctggatagactaccttataattttgtagttattagtgcaggtattattgtatcttcttgcttgctaacatatatgtgttacagccttctaagataagaaggtatctttcaagacaccacttactaccacttgtttttaggagctgctgagttgtggttttagtgctaacaagacaaacaagaatgatataaattgtgttggttttcttgttcacttttgacactgataatgatccttgcacagagtgtgatatcaagcatttggaattcaactttctatttcctattgattgacatgatacatacagtctgataagcatgcttgtgattccttcttgttccttagtaccttctagatacttatattatttcaactaggttctttaaacccctgtaaaactattatctaacattatagttttattcagtttacagatgaaatgcgaaacatgtcatataatcgttccgataatgagcacggattcttttggggcgagcttcagagaaggtgggtaataatttgccaatatataagctgatttttgctagctcatgcgtcaaattgataatatacggatatacctatgcattattcttgcaccccatcctgtataaatattttatttggatatatgtgtttgcgagaagcacaatagaaaatctttgatcatgggacatattctcagtcgatcggatagaaacttaagttgtctagatacatcagattgcatggtgttaattactaaagttgcaactttcctaggaattctaaaatatggtctttataatggacaaacaaattatgtgagcttattttttgcagtcaaggcttgtatctcttgcaatgttttgaccttaccagtttaacctgtaaattttatgctaagtgtaggtgcatatactttgtttatttacttcaattgcgcagattgtataactagttagttgctatctgtaagttcaactctatttttgcacttatgtgactgtttctatgttatccttgctcaacagctacttgaaggttgcatgtgaggagccccactcaacaacatcatctacaagatcaacaagctcgatatctaagacaccacaacaagtgctcgattcactgttcaaaatacctgaacaacgcacatatgaaccaagttccatggactggaagaaggtagttaagaggctgcagtcattcaattctcccatcacatcgaacaatcaagaaaaaccaaaaaatggtatgttgttttagccactgttatttgtgtcgttatttgttaagatcattaatttctttttgcatcacattgaacttttttcctttacttcctttatttctggcaattttttctgtatccatcttctaaatctgtagcatgttttcacattcttattcaatggcttccaaatatcactttagaatgaattctgggaagtgtagctgtttgagctaccatataataagatcaataattgtatgaccttcatttaagactagtttatttatggacttgataatacctttagttttgagcacatgcctcaccctattaatacagtaaaattgttttccccttcttgtttcaactgtcacttgttgtgctttgttattgttacatttgatacttctgaaaagatataacacctacttctctcattaagggaatgggtatcaagaatttcgtactgtcgctggaaggcattatgatacaatgaaaacatattatcagaaagtaagagggattttttaatctgaactactattatcatataccctctatcttttgtatttcttattgcctcctgtcatttcttcctatgcaggctgccatggcatattccaaaggagaaaaatcttatgcctcctatctcgcagaggaggtctgatatcccattttaatttgttaattctgagatgactatgatgattcaataaaagaaagaaggcggggtgatagcagataggttgtagggatttctgatgtagtgcagcatacagttctttaggaacatttcttatgccaatagactgcaattttctcaaagtttaaaactttgcataggctgttaaatctcagtaacttccttatgcctcagtatcaaaattctgtctttttaggggaagcattaccgtgaattagctcgcatggaagatgagagagctagcagggaaatatttgaagccaggtaatttgcataactttcccagctattacttttaaatcacatctgcgtgctaatcttctgtttgcagaaataagcatataacgaatacagtgactattgacctgcatgggcaacatgttaaacaagccatgaggcttctcaaggttcacatgatgatttgtgtgtgcatgccaagtgagtattctagtatgacccgattgggtgctacactgattatcagtgttaatattttttattcaactttgatttggtctaatgcttcatggtcctactgttgtctcctttcttgtgctcttataaacagccacctttcttagagtaattactggttgtggtgtagaaggcacagggaagggaaaaataaagcgcgcggtaagtatttgcttagacaagctgggacctcacatgtgtgcctgcttgttgtcatgcttcgtttcttcattaaatttatagtattatcagcatgttcttgaaactgagctgccctcatgaaatgtttggttgaataccttgataccttcctgtgttatattactttctatctcgtggtggctatatggccccactataatagaatgcttttagcatgcagctcttgacagtgtctgtgttgctgatctttactctttcaatctgtagactagtactcttaattggtcaatctcattacctaatgtaccatgcttttgaattctgtaaaaatggctgtggtaggttgccgagcttgtggagaaggaaggcgttgagtggcatgaggaaaatgccgggaccatagtactaaggcttggtggcccaagggagtatcgtttccttgagcatgacagtgactctgattgagccttgggtgtctgttttgaggagactttacatagattaacggccgttctaatctatgtatctcctgtatctatctgtatttacatgtgttgtaattatggataggtgacctaggtcgtcctctgatgtagggctgtagtttctgacatacaggctctggaatagcaaggagtagagaacaggtgctgtctgatgtaatgatcgttgtaggctctgatgtaatgatcattgtaggctgctaaccttgtaatgaactctagctatgtacctgtctaattgttttgatgtgatgctcaagataacttatgtcttgaatgtcaacattgcaacattcagacaattgatctactaaaggaactatcagaaacaaaattagctgt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0225100, RefSeq:Os01g0225100