Os01g0248600

From RiceWiki
Revision as of 18:47, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0248600

Description

GINS complex, Psf2 component family protein

Version

NM_001049120.1 GI:115435653 GeneID:4327215

Length

4079 bp

Definition

Oryza sativa Japonica Group Os01g0248600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:8177994..8182072

Sequence Coding Region

8178298..8178318,8178580..8178732,8179103..8179195,8179291..8179321,8179414..8179513
,8180006..8180120,8180485..8180559,8180663..8180710

Expression

GEO Profiles:Os01g0248600

Genome Context

<gbrowseImage1> name=NC_008394:8177994..8182072 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:8177994..8182072 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctgggcagtctgaccctcatctttctatcttctcaccctcagaggtggagttcgtggcggaggatgagattgtcgagatcgtccctaacattcgcatggaggccctcaacatgatatgcggggattttgggcccttcttcccgcaaattgcaagcaaagtgcctctttggctcgcggttgcactcaagaagcgtggcaaatgtaccatacgcacacctgactggatgactgttgaccgcttgacgcaggtattagatgcagaaagagagtcacccaaagaatttcagccattgccgttccactatattgaaatatctaagcttctctttgatcatgctcgtgatgacatctcagatgcatacctggtaagatctttgattgaggacatccgagatgtcagattccataaggttgagactggtctggagacaatatctggccgtactcatgctgtaaagctaaaaaatctctctgcaatggaagtgaatatcgtgcgtcctttcatggtgagaactttacaagcattctataagcatgatagcccacagatgattcagcaggcagataacacaggtagcagaccaacaccagttacagaccgtggtccaagaagagatctaaggcgcaggtaa</cdnaseq>

Protein Sequence

<aaseq>MAGQSDPHLSIFSPSEVEFVAEDEIVEIVPNIRMEALNMICGDF GPFFPQIASKVPLWLAVALKKRGKCTIRTPDWMTVDRLTQVLDAERESPKEFQPLPFH YIEISKLLFDHARDDISDAYLVRSLIEDIRDVRFHKVETGLETISGRTHAVKLKNLSA MEVNIVRPFMVRTLQAFYKHDSPQMIQQADNTGSRPTPVTDRGPRRDLRRR</aaseq>

Gene Sequence

<dnaseqindica>3755..3775#3341..3493#2878..2970#2752..2782#2560..2659#1953..2067#1514..1588#1363..1410#gggttggagtcgccgctgttcctcccctcgcctcgcagcctccgcctctcctcgtctttccggctcaatctgcggagagggtggaggcgcgcgcgggccactgccaccgtgaggcagccgcactcgggcaccgggacctcgggaaccctagccggctggccccggtttattgcctgccccttctggctgctagcggccgggctgcttgacgatttgtgggtttccctttcccatttgctcaggtgagatgaaatggtgaactagaactatgatggtgaaatgagtctatgtttctttgaagtattttccattgccaatttgtgatttctgatttatgaatcagtgaatgcgctgcggagtcgctgtttgtaggatttgtaaaacacgaagatgaatgggggtattacatcgctttgtaggattttgtatttgaactatatctatataatattgtaatatttgcacattttgaacttgcttgttataaattagtcgatcattgatgttatgagatattattgttatttaactaaatttgtacctgtatatgagatttgctgtattcgaaaaattttggtatgtgattgaacttgtgaagtaggactaaccaacgaaaatttcttggctacgcaaccgaggactaccaacgtaaaattcatggctacgccactgcccctgctgcctgacgccgtcgacaatgacaggatggtcgtacaccatcgtcccccatcacggatgacgacaggaccgtgcactgctccggccccatcaggggtacagccaccctcagtggcggcggcaggattggctccttggttcctcctggtgtcaccatctgaagccagacctaaggaacatactaatcccatgtctttcccatctacttgtatccttattatggcgcccaaagttctattaattggactggtgatggctgtcatggagataatgcaagttaagaattataccctagcccaggggcaagacattctcaaaatttgtccgatttctccacacgaaatgtgtactgatcttctgagtttctcaattagatctcctgttataatagtgtagtagatcaggtaagaacaccttatgctgacaaaacatgtggaaagaacacttttgaatccatatcagttgttcagttcataacttcagatatttctacgtttaggaattatcttgacaagtttgacagggtagcatttgcatcactctttgaagaatgtatgctataaaagtttgacatcacagacgccaataggaattgaacaaacactgattcactttctttttcttaaagtttacagacactaaatcatcaaatagaggaagcaatttagtgccacggtggtcaagatggctgggcagtctgaccctcatctttctatcttctcaccctcagaggtaatcaagcctaaatcaatcctttcctcattgaatcatttcaagagcagggtctggattcatgggttccaagttcattttgttggcctatgtgctattgcaggtggagttcgtggcggaggatgagattgtcgagatcgtccctaacattcgcatggaggccctcaacatgatatgcgtgagttgccagtcccttcactggcatctattttcattcatttctatttttgaatactctcactgtccactcgttttacctcacatttatttttgggttgctgcgcttatctttcctatgtactttatgaatgattaattacattatactcaaaattcacatgttttgctgtgattgatcctcgtttcactggccagttataaattccttttgctgtttcattgactattggttgcttttgctcagctcattttccagatgaggttttctgttttctgtcccacatgaggttttctgctgtttgaagtctcaatacgtcaaatttggtcaacgcaacactcatactcaccaattcatcatatagggggattttgggcccttcttcccgcaaattgcaagcaaagtgcctctttggctcgcggttgcactcaagaagcgtggcaaatgtaccatacgcacacctgactggatgactgttggtaagttcctgcttgcttatctgagctgcttaatctcatgttttatcatagccaacatgtttatagtatttgctggtataataaattaataaatcataaagaaaggaggttctgtgcctaatcttattaccagttactaagtagtaatgcattcaacctacatgacagattgcgtaactattactccctccgtcccataatataagggattttggtgggatgtgacacatcctaggatagtcttaggatgcatcacatccttccaaaatcccttatattatgggacagaaggagtatatttttctccctgaaatttcttgtctgtgcactcttatagcatttaatgtcacaatctaatagaataatactgtttatatttgacatgcttacatgtgtcttagattctgactgcctgattgcatatttgtctgtgctacttctttacattttcatggtacgcggtctgttcactctttaactatttattgctagaccgcttgacgcaggtattagatgcagaaagagagtcacccaaagaatttcagccattgccgttccactatattgaaatatctaagcttctctttgatcagtaagtattcatatttcatagaaactcttgtagtaattctataataagaatctgcaaaacttatttctctctctctatatatatgtgtcaagtgctcgtgatgacatctcagatgcatacctggtgagttacagaaaccttcggaagaaatttccactgactaattggctctgatattatttggaaacaaaattttgcttacttctagctgcatgtaggtaagatctttgattgaggacatccgagatgtcagattccataaggttgagactggtctggagacaatatctggccgtactcatgctgtaaaggtatattctctccacactatagctactttatctgccgcttgtcctggctgctcagattgtgttgaagctattccatgtgttatacctttcttctatctactgtttgtagcatttatttttttaatcaattttttttgtagtgtatgtaaactataaaacttaacctttctcataagcatcactaacaaattaaacataaaactcgtctatttgtgatgtcacacgattgtgattgtaaaatgtaaactgtgtatgcttccatattcttactcaatatttaccatcagacttcttaaattatgacccattatgatcttttttccctgcttacctcatgcacatatatatatatatatttgcatttatacagctaaaaaatctctctgcaatggaagtgaatatcgtgcgtcctttcatggtgagaactttacaagcattctataagcatgatagcccacagatgattcagcaggcagataacacaggtagcagaccaacaccagttacagaccgtggtccaagagtaagccttcattttttccacatatgatttgttctcgtttcctagaaagagttgttttttcaatcaaaattcgctctaagatgatatatgcaaatagtttcgtaccaacggtgcataataactttctactacatagaattcaatcacaaaaaagatgcttctcatttgtttcttgaaatcaagcttctaataacatgttattcatttctgcggtgatattatcaataaacattcctaaattcccatcatttttttttgcagagagatctaaggcgcaggtaacaagcaggatgtgtatctatcccttgaaaattttactgtgtgtagattgcagtaaatgaaggtacttgtgatctgtatctcactagctagaagccaactgcgtttccccaatttgttgtgtgtgtaccaaaattttataggactaataacatttgacatggttttgtttttgaagaagcgaagatagtaagatacatcaattatctgtcacaaaagggagattcctcatgtattctggatggatgtaacttatgtgatgtatttttactatttctggcataacctaaatttcctgactttattc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0248600, RefSeq:Os01g0248600