Os09g0515500

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Revision as of 07:32, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0515500| Description = Initiation factor 2 family protein| Version = NM_001070203.1 GI:115480148 GeneID:4347576| Length = 4441 bp| Definit...")
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Gene Name

Os09g0515500

Description

Initiation factor 2 family protein

Version

NM_001070203.1 GI:115480148 GeneID:4347576

Length

4441 bp

Definition

Oryza sativa Japonica Group Os09g0515500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:20731835..20736275

Sequence Coding Region

20732054..20732080,20732256..20732346,20732681..20732759,20733118..20733451,20733642..20734676
,20734849..20734998,20735489..20735923

Expression

GEO Profiles:Os09g0515500

Genome Context

<gbrowseImage1> name=NC_008402:20731835..20736275 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:20731835..20736275 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtggcggatgctgcgacggaaggattttcacacgggccttgtgaatttggcctcccgtgtggatcatgggggagcgaagaatttttccagtgggacgtttggaaagctggctgacttcgttcttagcgatactcatacacccattgtaaaaggtgctgctaattgtacggcttataaacactgcactatcaggaattttcatgcaggtgtatacatgttagcatggagtaggaagcgtgaagaagttgcagggttaaaagcacctaaaaaggagaagcgagtgaaaagagaaactagaactcaacctcctgtagaagcgccatatgttgcaccaaaacaaaagatagctatcaaatcatcaccagataaaacagttgacatttttgatgggatgacattgcttgatctctccaaacggactggtgcatcaattggtgcacttcaagacatactcacagatcttggtgaaaaggttgaatcagagttcgacgctatcagcattgatcttgctgagttagttgctatggaacttggtgttaatatcagaagaatgcacactggtgaaggcacacttgaaccacgtcctgctgtggtaacaatcatgggccatgttgaccatggtaaaacgtcacttctagattccctgcgtcaaacatctgttgcggctaaggaagctggtgggattactcaacatataggtgcctttgttgttgagatgccatcaggagcctctatcacatttcttgatacaccagggcatgctgcctttagtgcaatgcgggctagaggtgctgctgtcacagatattgtagtgcttgtagttgcagctgatgatggggtgatgcctcaaacacttgaagctatgtcacatgcaaaagcagccaatgttcccattgtagttgctgtaaacaaatgtgataaatctggagccgatcctgagagggtcagaattcagctgggttcagaaggattgcttttggaggatatgggtggtgatgtacaggttgtagaaatttctgcagtaacaaaacttggtttggacaaattggaagaggctttgctccttcaggctgagataatggacctgaaagctagaattgatggacctgcccaagcttttgtggtggaggcaagagtagacagaggcagggggccattggcaacagctatagtcaaggctggcacattagtcagcgggcagcacattgttgtgggagcagagtggggaagaattcggtctcttagagatactgctgggaaaataacagagtctgcaaaacctgcaatgcctgttgagattgaggggttaaggggccttccaatggctggggatgatgttgtggttgttgactcggaagaaagggcaagaatgcttagtcaaggacggaagaaaaaacaggaaaaagacaggcttcgaaagattgatgaagacatgacagaggaggcggaaattggtgaagagactcctgaaagagttgagatgcccatcattgtgaaagctgatgtacaaggcagtgttcaagcagttacagatgccttaagaagccttaatagtccacaggtgtttgtgaatattgttcatgttggtgttggcccaataagccaacatgacattgatctggcacaagcatgccgggcatatatagtcggtttcaacatccgtactcctccaagtgctatcactctagcagcaacacaagccaacataaagattttgctgcacaaggtgatctatcatctccttgaagaaatgggacgggagattgtcgagaaggcaccgggcacccctgagacccaggtttcaggggaagccgaggttctgaacatattcgagctgaaagggcgtagcaagtcaaaagggcctgacataaagattgccggctgccgaataactgacgggcacttaagcaaaaccgggacgatgaggcttttgaggagtggagatgtcgtctttgagggtccatgcgcatctctgaagcgggagaagcaggacgcagagacggtcgacaagggtaacgactgtggattggtgattcaggactgtaacgatttccaggttggggacatcgtccagtgcttggagcaggttatcaggaagcccaagttcatctcaacacaaagcggcgcggttcggatagaatgctga</cdnaseq>

Protein Sequence

<aaseq>MAWRMLRRKDFHTGLVNLASRVDHGGAKNFSSGTFGKLADFVLS DTHTPIVKGAANCTAYKHCTIRNFHAGVYMLAWSRKREEVAGLKAPKKEKRVKRETRT QPPVEAPYVAPKQKIAIKSSPDKTVDIFDGMTLLDLSKRTGASIGALQDILTDLGEKV ESEFDAISIDLAELVAMELGVNIRRMHTGEGTLEPRPAVVTIMGHVDHGKTSLLDSLR QTSVAAKEAGGITQHIGAFVVEMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVV AADDGVMPQTLEAMSHAKAANVPIVVAVNKCDKSGADPERVRIQLGSEGLLLEDMGGD VQVVEISAVTKLGLDKLEEALLLQAEIMDLKARIDGPAQAFVVEARVDRGRGPLATAI VKAGTLVSGQHIVVGAEWGRIRSLRDTAGKITESAKPAMPVEIEGLRGLPMAGDDVVV VDSEERARMLSQGRKKKQEKDRLRKIDEDMTEEAEIGEETPERVEMPIIVKADVQGSV QAVTDALRSLNSPQVFVNIVHVGVGPISQHDIDLAQACRAYIVGFNIRTPPSAITLAA TQANIKILLHKVIYHLLEEMGREIVEKAPGTPETQVSGEAEVLNIFELKGRSKSKGPD IKIAGCRITDGHLSKTGTMRLLRSGDVVFEGPCASLKREKQDAETVDKGNDCGLVIQD CNDFQVGDIVQCLEQVIRKPKFISTQSGAVRIEC</aaseq>

Gene Sequence

<dnaseqindica>220..246#422..512#847..925#1284..1617#1808..2842#3015..3164#3655..4089#gatctcctccgaaccctctgcatccccctaaacctttctccgctcctccccgccgtcgccgccgccagcaaccctagccctcctccgccgtcgccggtgataacctctcccatcgccgtacgtccccaggatcccttcccatcctcctcccttatcccgtctctttagtctcgccgtggggggcagggtggaagagccgccgccggcggagcgccgagaatggcgtggcggatgctgcgacggaaggtgatgctctctctctctctctctctctctctctctctctgagtccccgtgcattttctgttcgtgtgggttgcgaggctataatcgaacatttatgctctcccatggagctcgatgcctttcgaggcttttgcattgcggaactgacagttgaagggctttgcataatttgcaggattttcacacgggccttgtgaatttggcctcccgtgtggatcatgggggagcgaagaatttttccagtgggacgtttggaaagctggctggtgagattgttattggcatatattgatcacattttaactttaggaaggctaattgctgcgttagttgcaagctcaagatttcatcttggtattaactgggttacattttttttagtctgtagttggtttcctgctgaatgttaaagatgatagtgctctatgcatgatgttgtatggttaatagtactgtgcttcctaagttacactgggaaattcacattgctttaagcacagaagatcaacttctacgcattaattgttaaatttagttcgatacattggatccctagtaggttgttaatggtgttacacctgttatatttcctgagtgcagacttcgttcttagcgatactcatacacccattgtaaaaggtgctgctaattgtacggcttataaacactgcactatcaggtatgattatctatttggtcccactatttgatgccttaagtattccagttgcattcacgcattatatgaatatggtaaacctacttgagcatccatcctatatatttgaatgaggactagatccatcgtgaatcttaatattgttttctctggggatactgacctttgtatcatttataatttccagtatttttaaaaatatactcattccgtcttctacaattattcatgttgtacaatttttcaccatatattatatgttttgcatctgttttagtaagatgttgctactgttattatttcctgtggattttaggcttcacttatagattaggtgacaataccgtcttctttataggaattttcatgcaggtgtatacatgttagcatggagtaggaagcgtgaagaagttgcagggttaaaagcacctaaaaaggagaagcgagtgaaaagagaaactagaactcaacctcctgtagaagcgccatatgttgcaccaaaacaaaagatagctatcaaatcatcaccagataaaacagttgacatttttgatgggatgacattgcttgatctctccaaacggactggtgcatcaattggtgcacttcaagacatactcacagatcttggtgaaaaggttgaatcagagttcgacgctatcagcattgatcttgctgagttagttgctatggtatgtattaattatgtttctttaatatctctatgtatcctgatgttcttttaatctagctatctgagtatctgatgttaacagaatttactagtttgacaagattttattagagtaaccatgcgtcttaatgctttatatattttgtttattttaatatgaatccatttgttccatggttattcaacaggaacttggtgttaatatcagaagaatgcacactggtgaaggcacacttgaaccacgtcctgctgtggtaacaatcatgggccatgttgaccatggtaaaacgtcacttctagattccctgcgtcaaacatctgttgcggctaaggaagctggtgggattactcaacatataggtgcctttgttgttgagatgccatcaggagcctctatcacatttcttgatacaccagggcatgctgcctttagtgcaatgcgggctagaggtgctgctgtcacagatattgtagtgcttgtagttgcagctgatgatggggtgatgcctcaaacacttgaagctatgtcacatgcaaaagcagccaatgttcccattgtagttgctgtaaacaaatgtgataaatctggagccgatcctgagagggtcagaattcagctgggttcagaaggattgcttttggaggatatgggtggtgatgtacaggttgtagaaatttctgcagtaacaaaacttggtttggacaaattggaagaggctttgctccttcaggctgagataatggacctgaaagctagaattgatggacctgcccaagcttttgtggtggaggcaagagtagacagaggcagggggccattggcaacagctatagtcaaggctggcacattagtcagcgggcagcacattgttgtgggagcagagtggggaagaattcggtctcttagagatactgctgggaaaataacagagtctgcaaaacctgcaatgcctgttgagattgaggggttaaggggccttccaatggctggggatgatgttgtggttgttgactcggaagaaagggcaagaatgcttagtcaaggacggaagaaaaaacaggaaaaagacaggcttcgaaagattgatgaagacatgacagaggaggcggaaattggtgaagagactcctgaaagagttgagatgcccatcattgtgaaagctgatgtacaaggcagtgttcaagcagttacagatgccttaagaagccttaatagtccacaggtatctatgtcatgcagtttgatgcctttagtttttacttagtagttagcctcacaaatatgatcacaggttgtgatattagtgaccaaggataatatgtagtatttgatttatcatgtagtacagttttttctgttaagtttgtcctcatgcctatatcatctccttgtaggtgtttgtgaatattgttcatgttggtgttggcccaataagccaacatgacattgatctggcacaagcatgccgggcatatatagtcggtttcaacatccgtactcctccaagtgctatcactctagcagcaacacaagccaacataaaggtaccttgtttattactactctatgtctggttttctgctgaatgcatatttggaagggatgttgttctgttccttgaaatgtgaccattggtgatcttccatatcatcttttcttggcctgtgtcgcctttctggtaacataggctgctactgtccgtagtggttctgattccatggtctctactgttcctccatattgtataggaagacaatctttaaataatttgtgtgtgtgcataattgaggccatggtaatcgattgaattggctgggttgaacttttccatgaaatctgtagattaaaattcaataatatggtaattatgtttggttcttaatgtaccgatttactgatccatgcattgataattcttggttgatccatcttccatgagatctgtagattaaaattcaatgatatagtacttatgtttggttcttaatctaccttctttgatttagttagctgactttaatgtctgctctttagattttgctgcacaaggtgatctatcatctccttgaagaaatgggacgggagattgtcgagaaggcaccgggcacccctgagacccaggtttcaggggaagccgaggttctgaacatattcgagctgaaagggcgtagcaagtcaaaagggcctgacataaagattgccggctgccgaataactgacgggcacttaagcaaaaccgggacgatgaggcttttgaggagtggagatgtcgtctttgagggtccatgcgcatctctgaagcgggagaagcaggacgcagagacggtcgacaagggtaacgactgtggattggtgattcaggactgtaacgatttccaggttggggacatcgtccagtgcttggagcaggttatcaggaagcccaagttcatctcaacacaaagcggcgcggttcggatagaatgctgatagatgtttagttgttttctgcttccattcgtgatcaactaaccaagattttggcagtggaacaagagggagatgatcaagttggtgcgcttattattttctcgccaacaaacttgttgctgcaaccaatttcaaacagaaacctctattcatatatgagatgaagacatggttaatcttgttcaggtgcttgtgtttgttgtacattcctgcagtttccacaagttctgcgaataacgtggattactggattagtgaaaaggttattgttattgacttaattattattactgtataattgcagccacagaaaggccatttttgccggttcatgcgagtccaggctctgttg</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0515500, RefSeq:Os09g0515500