Os06g0643600

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Revision as of 09:28, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0643600| Description = Formamidopyrimidine-DNA glycolase family protein| Version = NM_001064714.1 GI:115469159 GeneID:4341640| Length = 296...")
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Gene Name

Os06g0643600

Description

Formamidopyrimidine-DNA glycolase family protein

Version

NM_001064714.1 GI:115469159 GeneID:4341640

Length

2968 bp

Definition

Oryza sativa Japonica Group Os06g0643600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:27106860..27109827

Sequence Coding Region

27107271..27107669,27107760..27107794,27107938..27108037,27108131..27108208,27108283..27108333
,27108459..27108584,27108676..27108744,27109289..27109346,27109421..27109472
,27109561..27109795

Expression

GEO Profiles:Os06g0643600

Genome Context

<gbrowseImage1> name=NC_008399:27106860..27109827 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:27106860..27109827 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccggagctgccggaggtggaggcggcgaggagggcgctggaggcgcactgcgtggggaggaggatcgcgcgctgcgcggtggcggatgaccccaaggtggtggtcgccgccgccggggggcgcgtggcgttcgagcgcgccatggtcggccggaccatcgtcgccgcgcggcggaggggcaagaacctctggctccgcctcgacgcccctccattcccctccttccagttcgggatggcaggtgcgatctacattaagggagttcctgtgaccaagtacaagagatcagttgtcagttctacagacgagtggccctccaagtactccaaattttttgttcaacttgatgatggcttagagttttccttcactgataagaggcggtttgcaagagttcggttgtttgaagatcccgaaactgtacccccgatttctgagttaggaccagatgctctctttgagccgatgtcttctgacagttttgcggactcgctgagcagaaagaagattggaataaaagctcttctactcgatcagagcttcatatcaggaattggtaattggattgcagatgaggtgctttaccagtcgagaacccatccattacagattgcttcaagtctatccagggagagttgtgaagcactacaccaaagcatccaagaggttgtgaaatatgctgttgaagttgatgctgattgtgactgctttcctgtggaatggttattccatcaccgatggggcaagaagcctggtaaagtcaatggacagaaaattgagttcataacagctggtggcaggactacagcatacgtgccacaactgcagaagctgactggaatgcaatctagcaaagtagtcattgctaacccagaacaagtggcagagaacgatgatgcgaaggaaatagacacagatccagaagatgctgataatttgaatacaaagaagcgaggagcaacttctagggttgccaggggaaagcaaaagagagatgccataggtgccctttccagaaagacaaggaaaaatggtggtggcaaggagaaaccaggtagtgactatagtgaagatgatggtgagactgctgaaccaaacaaagttagcaccagtagcaagggcgagaaggcagatccggtgagaagatcatcaaggaccgcatcgaaaccccgccaggtaaataaattaaaagaaagatag</cdnaseq>

Protein Sequence

<aaseq>MPELPEVEAARRALEAHCVGRRIARCAVADDPKVVVAAAGGRVA FERAMVGRTIVAARRRGKNLWLRLDAPPFPSFQFGMAGAIYIKGVPVTKYKRSVVSST DEWPSKYSKFFVQLDDGLEFSFTDKRRFARVRLFEDPETVPPISELGPDALFEPMSSD SFADSLSRKKIGIKALLLDQSFISGIGNWIADEVLYQSRTHPLQIASSLSRESCEALH QSIQEVVKYAVEVDADCDCFPVEWLFHHRWGKKPGKVNGQKIEFITAGGRTTAYVPQL QKLTGMQSSKVVIANPEQVAENDDAKEIDTDPEDADNLNTKKRGATSRVARGKQKRDA IGALSRKTRKNGGGKEKPGSDYSEDDGETAEPNKVSTSSKGEKADPVRRSSRTASKPR QVNKLKER</aaseq>

Gene Sequence

<dnaseqindica>2159..2557#2034..2068#1791..1890#1620..1697#1495..1545#1244..1369#1084..1152#482..539#356..407#33..267#tttggggtttgggggagggggagggggaggggatgccggagctgccggaggtggaggcggcgaggagggcgctggaggcgcactgcgtggggaggaggatcgcgcgctgcgcggtggcggatgaccccaaggtggtggtcgccgccgccggggggcgcgtggcgttcgagcgcgccatggtcggccggaccatcgtcgccgcgcggcggaggggcaagaacctctggctccgcctcgacgcccctccattcccctccttccagttcggtcagtacctgcctcctcctcctgcagttcgatcgattgctttttgctactagtaaattggagtgacaaattgctgtgtgtgttgcagggatggcaggtgcgatctacattaagggagttcctgtgaccaagtacaagaggcatgtgtaatttgtatgctggggaatttgttatacagtaatggactacatgctgattcagaaaattattgcagatcagttgtcagttctacagacgagtggccctccaagtactccaaattttttgttcaagtaagatctcctagctgtcacagcatcttttttcagtacattgctgctatgtgagatcaaaattaacagtttataagcaaaaggggatatggaattgttgttcatcagtactgtactgtactactttggttgggtcttataaagagagagatggataggtagtaactgtcatcgtttagcttggacacaagatcgatttgttaggctatatagctcagaaaacatgttttggctgagcctctagcggactagctaatccaaaatgcggaagaacaaatcgccacaaacagtagtgcttttgtgatctccagaaagccagaaaggaagacgtgccatgtctcagggttaacatgctatcatataaacacgtcaatattacttctgctatataaggtttattgaatagtaatagaacacgcaatgcatgcctaggcattgttgtttagtcaaaatttgatctcctcttattgtttatgtccttttatgatatcataggttggctcttttaatgttggttgtttctaatgcatttaacttgttccagcttgatgatggcttagagttttccttcactgataagaggcggtttgcaagagttcggttgtttgaagatgtatgtgctttgactagttgaatctaaatcttcagagtcttcctttcatgttattttctaatgatgtccctaatcaaataacgatttgcagcccgaaactgtacccccgatttctgagttaggaccagatgctctctttgagccgatgtcttctgacagttttgcggactcgctgagcagaaagaagattggaataaaagctcttctactcgatcaggtgattttattaccataaaaccaatatgagtttttagctccacaaaattgtttctacaatatacgggattaggtccttgtatctcctatacaaacagaagacttgattttttttttattgaacagagcttcatatcaggaattggtaattggattgcagatgaggtgctttaccaggtattaatacaaatattattagagcttgaatgaaatgcataaattttaattatgaattcatgttgttttttcagtcgagaacccatccattacagattgcttcaagtctatccagggagagttgtgaagcactacaccaaagcatccaagaggttgtgtaatttgacattattttaaataattttagtgtattctactgatgtacaatcacggagaacttatgcctgaaataaagcatatttcaggttgtgaaatatgctgttgaagttgatgctgattgtgactgctttcctgtggaatggttattccatcaccgatggggcaagaagcctggtaaagtcaatggtgagattgtcctcaagttttatcatgaactcgttattgtcttgaataaaattgagcaaagcgttcgcttgtagttttgctgatatatgatggtgtataatcgaacatgttaattattacccactactttaaatgtcttgcaggacagaaaattgagttcataacagctggtggcagggtaagctcttatctgcttcagtactactacactttctagtgctacgaacattcatgcatctaccctctgatttgtactctcactatttagactacagcatacgtgccacaactgcagaagctgactggaatgcaatctagcaaagtagtcattgctaacccagaacaagtggcagagaacgatgatgcgaaggaaatagacacagatccagaagatgctgataatttgaatacaaagaagcgaggagcaacttctagggttgccaggggaaagcaaaagagagatgccataggtgccctttccagaaagacaaggaaaaatggtggtggcaaggagaaaccaggtagtgactatagtgaagatgatggtgagactgctgaaccaaacaaagttagcaccagtagcaagggcgagaaggcagatccggtgagaagatcatcaaggaccgcatcgaaaccccgccaggtaaataaattaaaagaaagatagcaagagatgaagagactcgctgatgttcgcaaagatcattttggtgtgtgtatagctttagctttagatgctctccgatggccatattggtgaaatccttgtagccttgattagtgagttcttttctctgtgtcttgtgcgctactgtaccagattattcaaagatgccctcttggaaattggaaggtgtaatcgttccatactgggcaaaacatatgcttctcctgtgcaacatgaacaatgacatatctaggctatgttgctcgtgtcaaaccaccacctaggttatctttttttatttttttttaagacggaagaagtaaggatgaatgtatacacacatgcttgtctatcattcttaagatttgagtctcttggggacagagagtaatccatagatttaactcaatt</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0643600, RefSeq:Os06g0643600