Os01g0579600

From RiceWiki
Revision as of 18:53, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0579600

Description

EF-Hand type domain containing protein

Version

NM_001185505.1 GI:297720144 GeneID:9269084

Length

2918 bp

Definition

Oryza sativa Japonica Group Os01g0579600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:24084680..24087597

Sequence Coding Region

24086691..24086768,24086860..24086972,24087156..24087210

Expression

GEO Profiles:Os01g0579600

Genome Context

<gbrowseImage1> name=NC_008394:24084680..24087597 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:24084680..24087597 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcaaatggttatcgctattttgtcggaatctgatatgaaattgtcagaagaacttctcgaggccattattgataagacatttgaagatgctgatgctgatagggatggaaaaataaaccaacaagaatggaaggaattcgtattgcggcatcctaatctattgaagaacatgacactgccttatctaagggacatcacgacagttttccctagttttgtcttcaacaccgcggttgaagattga</cdnaseq>

Protein Sequence

<aaseq>MQMVIAILSESDMKLSEELLEAIIDKTFEDADADRDGKINQQEW KEFVLRHPNLLKNMTLPYLRDITTVFPSFVFNTAVED</aaseq>

Gene Sequence

<dnaseqindica>2012..2089#2181..2293#2477..2531#gatggggagaggcggggtgagagagaagcgcacgggtgattgatcttgcatccatggagtcgggctacggcttccgcttctccgacgacgacgtggtgggtcggtggctcagctacctgttcgtcgccggtcgccggcggcgctgccgtttcttggagctatgtttgattggattttggattttggatttgcaggagtcggcgagctcgctgacggtgggggagcggctgtgcgcggcgttcctgccgttcgtcgccattgccgaggccgtcttcttcgcgctcaccgactgcctcgccgacctcctcccgccgtccgccgccgcctcccgccaccgccgctccgccgcttcctcctacctcgccgccgtcgccaggaaatggaaccaccagcagcgtggcagggtcggcatcggctgcacctccctcaccctccgccagctcgcccgcctcgccgacgaatccagatgctgtaatctctaatttcacctcacccccctcccattgtttgtatcgccttcttcttcttctcgagtccaatttcgcaatgtggtccgatctgatctggtgtttggtgtcgatcgcatcgggtcaagtctccgtgaacgaggtggaggcgctgttcgagctctacaagaagatcagctgctccatcatcgacgacggactcatccacaaggtttgtgttcctgtcaatttgtcattttggatcaggttgatgtgacaaaaatttctttcgatacgttctttcgtggcaagaattctcggtgattatcgaataaactaatagttttttttttgagaggttatgctctgcacttcgatgtctgttcttgtcttggtctctgaaaattgggttcgtcaggcgaaaagaatgatcgattgattagtagtcggccttaagaaggcaatgttgcaatttgacccagtaaaaaaattgcaactaggtgtactagatcgaccgatccagaggtgttgcactgcacgcaatggattagtgggtcacccatggagcattattgtattttggtttcacaacccatagaattttttttgcctctagtttactttttgtcacagcttgcatgtcgggtggctcccatgtgcaatttgaccatagaatagttcctgtttctcagattgtttggttggcatgttcgttctcatggtacactatgtgagcaactgtaacgctgattggtaaggggaaggcatggcatggctgttttttcgttaagaaaacactgtagtatctttgcaatacaaacattcgaagtcaacagaaaccatttaatttgtattttcaggagcatcgtgatttattggagtgaatgttttttttaataaaaacttgagaaagacaaataaaatctgaaatgctctctatgctggatttgtcatacgtaacagttcctatgctgaattgttctttaggaagagctccagctggcattgtttaagactccaagcggccagaatctttttcttgatagggtgagtgtttacttcatttgctctctttagtactataaattttatttgaccatttaccactttgtgcactatgttttccattgatctccttttaattgttagtttatttccatggcatgttactttcagagggtataagtataaccactgaaagaaattctctctgatacaggtttttgatttatttgatgaaaagaaaaatggtgtaatagagtttgatgagtttattcatgctcttagcgtcttccatccattggcaccattggaagacaagataaattgtaagtacacttctttcagacactaccttcttaaattcatgtatcgaggtatatttacaataaggcctccctttggattgttttagttgcatttaggttgtatgacttgagacaaactgggtttattgagcgtgaggaggttagttcatcaaggcactctgtattaatttgcaacaagtatgttatttgtgttctagtacaaatctggtagtgacggcatggtctgttttgcaggttatgcaaatggttatcgctattttgtcggaatctgatatgaaattgtcagaagaacttctcgaggccattattgataaggtgatcaatcatttcctcggctctgtcctatgtgaacatgccctttttgctgcatggatttaagttttgctacaatttttctgtatttcagacatttgaagatgctgatgctgatagggatggaaaaataaaccaacaagaatggaaggaattcgtattgcggcatcctaatctattgaagaacatgacactgccttatctaaggtattaaatatgagcttgagagctttatgaactggactattaagttctgtcaaatatatactgttgcgcagagaaatctcgtctggaaactactgctaaattgtttgaaaaaaataccagtcaggacttcattaaattcctcgttatttactttgttatttttttgtccatcttatactacagggacatcacgacagttttccctagttttgtcttcaacaccgcggttgaagattgaacataatctaggaatcacttgaaggttgaactgcgcaagatccccggatgatggtgacaggttgcctgctgatcctgccaactttgtgctgcatgtttcttggccagctctcaggaatggaaacagatatgagaattcatcatgagccctcgctgaagaaccacaattggtgattgttaatcaagatcaatgctttgagactcaatttttctgcaaaccgaggctcatctatgacagcaaattggtcaacttttagcagacaatcaagttcgtgtacatacatcctctcggtagttcaggattaaggagcatagtagtgagcaactgtatatatgattggttgtaggactcgggaaattcaacgtttttgtatccggtcagtttggg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0579600, RefSeq:Os01g0579600