Os06g0644500

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Revision as of 09:28, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0644500| Description = Zinc finger, DHHC-type domain containing protein| Version = NM_001064722.1 GI:115469175 GeneID:4341648| Length = 642...")
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Gene Name

Os06g0644500

Description

Zinc finger, DHHC-type domain containing protein

Version

NM_001064722.1 GI:115469175 GeneID:4341648

Length

6428 bp

Definition

Oryza sativa Japonica Group Os06g0644500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:27173682..27180109

Sequence Coding Region

27173844..27174164,27175055..27175195,27175489..27175601,27175759..27175836,27175981..27176146
,27176868..27177006,27177083..27177182,27177561..27177618,27177777..27177854
,27177933..27178031,27178312..27178390,27178481..27178629,27179184..27179612

Expression

GEO Profiles:Os06g0644500

Genome Context

<gbrowseImage1> name=NC_008399:27173682..27180109 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:27173682..27180109 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtcggagatcgaggtgctcgaggacaccaccaccacgatggccgcctccgccgcccccgtggcgcccgcgtccccatccccatcccccgccgccgctgccgacggcgaggagggggaggggccggcccctgcggcggaggacgactcgctgaagaacgacgtgtacacggcggcggcgtacggcgatctggagaagctgcagcggctagtggagggggagggccacccggtcacggagcccgacggcctcggctaccacgcgctccagtgggccgccctcaacaaccgcgtcgccgccgcgcagtacatcctcgagcatggagcagatgtaaatgctgtggaccacactgggcaaacagcacttcactggagtgctgtacgtggacacatccaagttgctgagcttcttctgaaagaaggagctaaggtggatgttgctgatttatacggttatcaggcaacacatgttgcagcgcagtatggccagacagcatttatttatcatattgttgcgaagtggaatgctgatccagatgtccctgataatgatggaagaagcccactgcactgggctgcttacaagggatttgcggattctatacgtctccttttgtatttggatgcttatagggggcggcaggataaagaaggttgtacccctttacattgggctgctattagggggaacctggaggcatgcactgtgctagttcaggctggcaaaaaggatgacttgatggtgaaggataagactggtctaactccagcacagcttgctgctgataagagtcatcggcaagttgcattttttcttgacaatgctaaaagggtatatgatagaggatgtgatgggaataccaattttggaaagctatcgaaactggggctagctcctgtactttggtgtattattgttggcttgcttgctacatatatacactctgttatatcaggtcaatatatcatggatatgacagcaccatttgggctgtttgcatggtcaggagttttccttgcaactgctggcctagtcatgttctataaatgtagcaggaaagatcctggctacatcaaagcaaatatacgagattcacaaaatcaaagggatgatgaacctttgttgaagttggagttagacaatcccgcacttctgtctggtaactggtcacagctttgtataacatgcaaaattgtgagacctgttcgttcgaagcattgttctacatgtgatcgctgtgttgagcagtttgaccatcactgtccttgggtatctaattgcattggcaagaagaacaaatgggaattcttcatgttcatcactctagaagtttttgcaatgatcattactggttctgctgccattataaggatggtaagagatccggcttctccagcatcctttattccttggctcagctattctgcttttaaccatactggggcactttcctttttcataatggacctcttccttttcttcggtgttgcagttctagcagtagtccaggcatctcagatagcgaagaacattacaacaaacgagatggcaaattccatgagatacagttatctaagaggtccaggtggaagattcagaaacccatttgaccatggagcgcgcaagaactgctcagaattcttgttaaatggatacaatgaggacattgaacgtcttgatcatacgtcacacactgatgaggaaatgggaatgatacagatgacaaacgcagtctctcagaatggcgagggcccttcccaccatggtaacggcactggccattcttgtgctgaatcacatgctcactcaaaatctcacagtcaagtaagttcatctcagtgttgtgaccacagtaagaagaccgatagaacaccattgggcctagggctgggccttggacgaaacagtgcttcccggcagtatgtccggtctcttctcccattgtga</cdnaseq>

Protein Sequence

<aaseq>MASEIEVLEDTTTTMAASAAPVAPASPSPSPAAAADGEEGEGPA PAAEDDSLKNDVYTAAAYGDLEKLQRLVEGEGHPVTEPDGLGYHALQWAALNNRVAAA QYILEHGADVNAVDHTGQTALHWSAVRGHIQVAELLLKEGAKVDVADLYGYQATHVAA QYGQTAFIYHIVAKWNADPDVPDNDGRSPLHWAAYKGFADSIRLLLYLDAYRGRQDKE GCTPLHWAAIRGNLEACTVLVQAGKKDDLMVKDKTGLTPAQLAADKSHRQVAFFLDNA KRVYDRGCDGNTNFGKLSKLGLAPVLWCIIVGLLATYIHSVISGQYIMDMTAPFGLFA WSGVFLATAGLVMFYKCSRKDPGYIKANIRDSQNQRDDEPLLKLELDNPALLSGNWSQ LCITCKIVRPVRSKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWEFFMFITLEVFAMII TGSAAIIRMVRDPASPASFIPWLSYSAFNHTGALSFFIMDLFLFFGVAVLAVVQASQI AKNITTNEMANSMRYSYLRGPGGRFRNPFDHGARKNCSEFLLNGYNEDIERLDHTSHT DEEMGMIQMTNAVSQNGEGPSHHGNGTGHSCAESHAHSKSHSQVSSSQCCDHSKKTDR TPLGLGLGLGRNSASRQYVRSLLPL</aaseq>

Gene Sequence

<dnaseqindica>163..483#1374..1514#1808..1920#2078..2155#2300..2465#3187..3325#3402..3501#3880..3937#4096..4173#4252..4350#4631..4709#4800..4948#5503..5931#gtttcaccaccaaccttcgtctccgccgcctccgcctctctccttccccctcgttctccgcttccacccaaaccaaacccaaacccaacttgcgaaaccccaacgaatcccccccaaaacacccacccagtcaaacactccccaactccgatccccacccccatggcgtcggagatcgaggtgctcgaggacaccaccaccacgatggccgcctccgccgcccccgtggcgcccgcgtccccatccccatcccccgccgccgctgccgacggcgaggagggggaggggccggcccctgcggcggaggacgactcgctgaagaacgacgtgtacacggcggcggcgtacggcgatctggagaagctgcagcggctagtggagggggagggccacccggtcacggagcccgacggcctcggctaccacgcgctccagtgggccgccctcaacaaccgcgtcgccgccgcgcagtacatcctcgaggttttcccccctcctgcttcccgcccgagcgtctcgcgatttggctggccttcgtgtagtcgttgtttgctagctagcgagggatttgggtgggggtttggtaggatgcgtcatcaaccaatgcactttatgagccgcaattttatatgtttttgaaccgtggactgtttgttgttatactgtgttggctaggtgtattcacttttagctcattggctggtgttttggataccaaattaccagtgcctgtggttgaattactccaggtttgtgaacaattttgttggtggccaactgcattaggtgaatatggagggtttgggactgctgcaagctgttatagctggaaattgatgtgcttttagtaggtttcggatgtttatatgacctggagatgatgccagtttttcagtatctcattttgtatgttgtaggcttgaatagaaatggaactagtgagactgtgctttggtttatccctgaattttcatatggatgtatgtttattttttccattggatcattgagaatgtggacatgcttactgctggataaagcagatgagaattcagctggcctgtgcagcgcccttgaggtgtttccgtttaagtcttcttttccttttaatcttaagatcatgagtgtatggtaggctcagtatagtctgaataagaaaggttactaattgtgtgcctactaagtgcatgaataaactcgcacataacatgcatactttgatggtaccaggaatttatcttgattgtggtatgtagtcagagtatgttattctctgcatgtagacgaagtatcactatgctattcagtgagcgcattctgcacatataattttgtttgaccggactatgattttgtgcttggtctttgaacagcatggagcagatgtaaatgctgtggaccacactgggcaaacagcacttcactggagtgctgtacgtggacacatccaagttgctgagcttcttctgaaagaaggagctaaggtggatgttgctgatttatacggttatcaggtctgaatttgacttcccttctgtattttggtccctgttttcctggtttgttgctttggttgtccaatgttggttcatgattctgaaagacaactaagtattgttggatatttgtttgccaagttaactgttgtatccacactaggggatcagggatttccagtatataaataaataaataaataaataaataaatttaacctatgaattctctaggtaaaatgaaaagcaagaatcaacaacttttgtctatggcagtgaatttgttaaaaactctatactgctgtttgcaggcaacacatgttgcagcgcagtatggccagacagcatttatttatcatattgttgcgaagtggaatgctgatccagatgtccctgataatgatggaagaagcccactgcactggtttgtaccttgttctctacatttatcattatcttatgttgcactggagtagtagtttctaccagtgcacttagtaatgcatgtccccataaaccttcagtgccccttatatttctttctctctctctctgtttttttttggcatattaccttgtagggctgcttacaagggatttgcggattctatacgtctccttttgtatttggatgcttatagggggcggcaggataaagaaggcatgtgctaaatttatctatttccattattacctgtactgctgtgcacataacagtgtaaaccaatggcttagccatatctccaattatatcagtacacttcagagcatgagatttacttctttactacaatgctgcccctaggttgtacccctttacattgggctgctattagggggaacctggaggcatgcactgtgctagttcaggctggcaaaaaggatgacttgatggtgaaggataagactggtctaactccagcacagcttgctgctgataagagtcatcggcaagttgcattttttcttgtaagtaacatgaaccatggcatttctgtttttgtattatagccattcttttgtagagcccaatgcattaagccattaacagttcatctactagagattctgccaagttacttaatatgatttgcgtaatgatgtttactaataggaaacatttttcttcatcattttaggttttatattccttctgacttataaattctttagagctgagtttcatgtctccatgatgaggtgttattggtgtaattcactgattatgcataattgcatacataagctttctgaactttgtagtttccctgtagattcagtacaagaagctgcaaaattctatgacttctacacatggaaatgatattattgaccagaaatgtcataaactagcataagacataaaactatgtaaccaaggaggcaaaatgctactctttgttgtgactttgctgatgcttatatgctcttatatatttttattatagattcgttgtgagtttgggaaccgaaatgatttcctgactttttgtgattgcacatgtagattaatatccttttcactaattcattattgttaatctagctaatgtcataagagtggtcatattgaccttgaggtgaaagaatattactggtatttcaagagagaatctactggaagatgatccttttgatgatgcttgtttatttagacagaaacaagacttgatttgatgattgcttgcaggacaatgctaaaagggtatatgatagaggatgtgatgggaataccaattttggaaagctatcgaaactggggctagctcctgtactttggtgtattattgttggcttgcttgctacatatatacactctgttatatcaggtaagtaccatttccaatgtcgctcactccatttgatctcccacgatgcagtatttactacatttcattctttcaggtcaatatatcatggatatgacagcaccatttgggctgtttgcatggtcaggagttttccttgcaactgctggcctagtcatgttctataaatgtagcaggtacttacgaaaatgaagattagttggcagttagtattaaaagttgaaaactcaagatagcatggggacatattgccagcatgttgattcttgttagatactgcttcacaaatttcaatatagtaacacaattcattatatattttttcatgttgacgcattttacatcagctgacctgcttatcagaaatgtggtagatgttttacttatatggttatgcccttctgttcttgcattctttatctgttgagcattttactgtgtgtaaatagcctgctattcttctgttacctacccccatgatcgccagatgagatatgcagcatttattgattatcctttagctgcatcatgacattggcctatgctatctgcaggaaagatcctggctacatcaaagcaaatatacgagattcacaaaatcaaagggatgatgtaagtttgaaatattagcttagttaatatagctttctacaggcacatttatcttctctttggactcgtgtgaatcttgtttgattcatttccagacttaaagccaaacaatatatccaaaatttcacaatcctaatcatgagtatttattcctttaggaacctttgttgaagttggagttagacaatcccgcacttctgtctggtaactggtcacagctttgtataacatgcaaagtaagtacagcattgtcgattagttttctctttgctaggttgatatttgggcctctgattccaagggttattctacagattgtgagacctgttcgttcgaagcattgttctacatgtgatcgctgtgttgagcagtttgaccatcactgtccttgggtatctaattgcattggcaaggtacttacgttcttttgggtatcactgtgttgagtagtgatcaaacatggttgtcatctcttctggagatgaaatggataacttatgtcttaaaatgctgaacttttaatgcagaagattatgttgctatgtatatcttaagaaagttgctataacattatgaagagctctgtgctctacaatacaatctctcttttttggtagcttttcgtttgaatgtttttccctgccggataccttcttgtcctttggtctgatctatagtgcactgtaactgcagaagaacaaatgggaattcttcatgttcatcactctagaagtttttgcaatgatcattactggttctgctgccattataagtattgtctgctaagtcctttgtggttctgtccttaataatttggagtgaaaaaaaatttccataagcctcaatgctgtttttgtcacagggatggtaagagatccggcttctccagcatcctttattccttggctcagctattctgcttttaaccatactggggcactttcctttttcataatggacctcttccttttcttcggtgttgcagttctagcagtagtccaggcatctcaggtatgtaaaggttgaatttagcttgctacttgatctttttttttctcatgagaaaccaacctatttttgacctgataatgaaaaaaaccaggaagcatgtttattgtctttacaaccatcagtaaatgttctgtaatacaaagtttcatatagaaacttctctgctgattttatgagggtttgccccagaaatttatgaagccttgctggatttgtcaaatgaacatgtcataattatatagttcatgtgtgtatcccctataaagtttggatacagtagaagtaacattgaattttaggcaatgaaattgctgtgatacataattcagtagcaaaactgatattccaattacaagatagagttgaagtcagtagatgccaggtattatctggcttatttgatctattaattagttttctgtgatgtttctgtatacgacagatctttccatctggtagctataactttttcagaatggacacgaggacttgaggagcattttttctgttctgttttatgacgtgttcatgccttacttccatctcccatgcagatagcgaagaacattacaacaaacgagatggcaaattccatgagatacagttatctaagaggtccaggtggaagattcagaaacccatttgaccatggagcgcgcaagaactgctcagaattcttgttaaatggatacaatgaggacattgaacgtcttgatcatacgtcacacactgatgaggaaatgggaatgatacagatgacaaacgcagtctctcagaatggcgagggcccttcccaccatggtaacggcactggccattcttgtgctgaatcacatgctcactcaaaatctcacagtcaagtaagttcatctcagtgttgtgaccacagtaagaagaccgatagaacaccattgggcctagggctgggccttggacgaaacagtgcttcccggcagtatgtccggtctcttctcccattgtgatttgttatatgcagatcatgtgtgtgctctctgtagattgtatgtgttcatgctgaggctccattatttatttagctgcttgtgacataccacataggtttcgctagcttacgttaatattgttggggtgctagctgtgtgaaaattcagatctattagatccagtattttttgtggtgaatacataggagatgaaggtagcaaggtgctcatgaatatccgctgatccgcagttcagaaatgtcttgtcgctcctgaaaagagggcaacaattttgtgcagatgcagcagcatgaaacatcttcattgctgtgtcccttggtgtcaatataactccagcattttagcttctggatcttacatctgtgggaaaatgtagttgtaaactaagataattgtaaatttattagcaaattctgaatttagatactcttgttgtgatctatagctgtactgacagtccagaaagttgtaataacaaaacaaatatctgaact</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0644500, RefSeq:Os06g0644500