Os09g0515800

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Revision as of 07:32, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0515800| Description = RabGAP/TBC domain containing protein| Version = NM_001070204.1 GI:115480150 GeneID:4347577| Length = 3946 bp| Defin...")
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Gene Name

Os09g0515800

Description

RabGAP/TBC domain containing protein

Version

NM_001070204.1 GI:115480150 GeneID:4347577

Length

3946 bp

Definition

Oryza sativa Japonica Group Os09g0515800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:20740255..20744200

Sequence Coding Region

20740453..20740614,20740780..20740881,20740954..20741039,20741363..20741634,20742138..20742229
,20742323..20742460,20742537..20742607,20742914..20743097,20743175..20743307
,20743689..20743783

Expression

GEO Profiles:Os09g0515800

Genome Context

<gbrowseImage1> name=NC_008402:20740255..20744200 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:20740255..20744200 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagcggcggcggcggaggaggcggaggcggaggaggaggaagccccaacaacacggaatggcgcttcaaccagacgctccgcaacgtgcaaggaatgctcaaagggcggagctttcctgggaaggtcttgctgacccgaagatcagaacctctttcacctcctgaatactccccgcgctatgagaatgatcgtgatgaatacgaacagaatgaaggctcacaagaaggaaaagggcaagcatctggaaacacagctgatagtatgagtgcaaagaaatcaaatcctccatcaacaagtagcaccaattcattaccagatgcccaaggattagtttctggggctagagctacagattctgcacgaattgctaaattcacgaacgaactatctaggccagctgttatattagacaagttgcgggaactgtcttggagtggtgttccaccttatatgcgacctaatatatggagacttcttctgggatatgcaccacctaatgcagatagaagagaaggtgttctgacgaggaaaagacttgagtacgttgaatgtgtttctcaatactatgatattcctgatactgaacgctctgatgaagagattaatatgcttcgacagattgctgttgattgcccaagaactgtgccagatgttacctttttccagcaccctcaaattcagaaatctctggagcgcattttgtatacatgggccatccgtcatccagcaagtggttatgttcaaggaataaacgaccttcttacaccattcttggtcgtattcttatcagagcatctagagggcaacatggacacctggtccatggaaaagctttctccacaggatgtttctaatattgaagcggactgttattggtgtctttcaaagtttctcgatggtatgcaagaccattacacctttgctcaaccaggaattcagcgccttgttttcaggttgaaagaacttgttcatcgtatagatgaacctgtgtcaaagcacatggaggaacaaggattggactttcttcagtttgcgtttcgttggttcaattgtcttatgattcgtgagattccttttcatcttgtaacacgcttgtgggatacctaccttgctgaaggcgattatctaccggattttcttgtatatatatcagctagctttttgttaacgtggtcagacaagctgaagaaacttgattttcaagagatggtcatgttccttcagcaccttccgacgaggaactgggctcaccatgagcttgagatggtgctctccagggcttacatgtggcacacaatgttcaaaagctcgccaagtcacctcgccagctag</cdnaseq>

Protein Sequence

<aaseq>MSGGGGGGGGGGGGSPNNTEWRFNQTLRNVQGMLKGRSFPGKVL LTRRSEPLSPPEYSPRYENDRDEYEQNEGSQEGKGQASGNTADSMSAKKSNPPSTSST NSLPDAQGLVSGARATDSARIAKFTNELSRPAVILDKLRELSWSGVPPYMRPNIWRLL LGYAPPNADRREGVLTRKRLEYVECVSQYYDIPDTERSDEEINMLRQIAVDCPRTVPD VTFFQHPQIQKSLERILYTWAIRHPASGYVQGINDLLTPFLVVFLSEHLEGNMDTWSM EKLSPQDVSNIEADCYWCLSKFLDGMQDHYTFAQPGIQRLVFRLKELVHRIDEPVSKH MEEQGLDFLQFAFRWFNCLMIREIPFHLVTRLWDTYLAEGDYLPDFLVYISASFLLTW SDKLKKLDFQEMVMFLQHLPTRNWAHHELEMVLSRAYMWHTMFKSSPSHLAS</aaseq>

Gene Sequence

<dnaseqindica>3587..3748#3320..3421#3162..3247#2567..2838#1972..2063#1741..1878#1594..1664#1104..1287#894..1026#418..512#cgagtcctcgtgatccatcctccccgacagatcgatccaattcgcatcatcgcatcacacacctcctcctcctcctcctccccccgcgccgccgtcatccgcggccttaccggcgaccgacgcggccgccgcgtcgccctcccgccgccgccgccgccgcctccgacgacgggtttccaaacggatccggtggaattccatccctctcgagcttagcgaggggggagagagaagaggaagaaagtgaggggaaaaaagcttcacaagaatacgcgcaccacgcatggggatccgagtcgggaggtagacggaggggcgagatccggcgaggcggagagcgggaggggattgtcgcgtggtttttggttgctcccccctaccgccagctccggcgatcccgaccacccaccggcgacgatgagcggcggcggcggaggaggcggaggcggaggaggaggaagccccaacaacacggaatggcgcttcaaccagacgctccgcaacgtgcaagggtgagccccttctctcgtcccctctgagctcccatcacgatccgattcctttgaaatggtatgcatgctggtctgcttggtgcgaagctgcgtgaaagtcagagcttccgtgtagattcgggtggatcctggtgcattctagagcggtggatctgggaattttcagagtattgcgagttacatggctgtctagtgttagagaatgtttcttggttaggtgaacttattctgaataaatccaatatctttttgctagaaatacttattttttttgtctaaacggtattccacatagtatgattatagattataatcgtactctgtggaacattacaatggagctttattgtatcccctttttccccttatatgttttgtcagaatgctcaaagggcggagctttcctgggaaggtcttgctgacccgaagatcagaacctctttcacctcctgaatactccccgcgctatgagaatgatcgtgatgaatacgaacagaatgaaggctcacaagaagtaatgtggcattggttggcatcgctttcagcttgtaaacaagttagtttgtaattgatgaacttcattttatacagggaaaagggcaagcatctggaaacacagctgatagtatgagtgcaaagaaatcaaatcctccatcaacaagtagcaccaattcattaccagatgcccaaggattagtttctggggctagagctacagattctgcacgaattgctaaattcacgaacgaactatctaggccagctgttatattaggtatgcctattttctgtacagggttgattaaatcatctgttgggtgtacaataattttggtttagcaatcaatgtttcgattattttcttgtcattttctttttcatcattgtcactgccaagatggatggaaaagggtataaactttatgtagggtgacaatcttgtgtcttgtgagttgttgcccctgtattttgttgcagcttgttcattctgaaaaatatttgcagtttctctgattcttctaggttccattagcttgtccagaattcagttgaaacccactgtttgttcttaattttttagacaagttgcgggaactgtcttggagtggtgttccaccttatatgcgacctaatatatggagacttcttctggtgagcttatttcaagacatgtttcaatccttttaataggtgttcctgtttcgaatttaatgtcagctggctacagggatatgcaccacctaatgcagatagaagagaaggtgttctgacgaggaaaagacttgagtacgttgaatgtgtttctcaatactatgatattcctgatactgaacgctctgatgaagagattaatatgcttcgacaggtttcccctgactttttcgactttgaatttgcctttttaggttccccaatagttcatgtaatcaattatataaactcatggtttcacttgtagattgctgttgattgcccaagaactgtgccagatgttacctttttccagcaccctcaaattcagaaatctctggagcgcattttgtatacatggtgagtcaccgccctttgctggttcattttgatttgtcagaatccttgtttaacacacaatctagctaagaaaacatgacatttttccatgatgcacaattcctgcttgtgctactccccttgtggttccctatgcagaacatacacgtttgtgaacctctcatagttaacctggcactgtttcatcattctagagggaaaatgtgataaatgggtggagtttgcatgatacatgacttgtcatctctgatgactagttcaaatttcccaagttggtctaataaggtgtttaggttatgtttgatatacattgtgttgatatcagtacaaggtgcctgttcttttggcagttatgcttgttccatcagttccacattagtgttctcttccaagttccaacaaggatcaattatgttggcatcaacacaatgccgccaccactacctacaattgtttgtttcttttctgtattattccgtgatacagtgactcaccatttccagggccatccgtcatccagcaagtggttatgttcaaggaataaacgaccttcttacaccattcttggtcgtattcttatcagagcatctagagggcaacatggacacctggtccatggaaaagctttctccacaggatgtttctaatattgaagcggactgttattggtgtctttcaaagtttctcgatggtatgcaagaccattacacctttgctcaaccaggaattcagcgccttgttttcaggttgaaagaacttgttcatcgtatagatggtaatgttcctccaattcaaatatttatgaacctgttctattgctagaattatatctactgaaagaaagggaacttaaggatttagaggactattacaaggggatggataataataggcgtatagaacagttcaatgtgctctacattataattagatctgtgcattatgaactgcactgttcactgtcactaagcttgtctttcttgagatctgttgtagtacagaatagttatgtgttgtttgtagaagaaaaaaagaacagttttgcctagtacattaaaattccaatgtttaaccatctggcatcttctggttatacagaacctgtgtcaaagcacatggaggaacaaggattggactttcttcagtttgcgtttcgttggttcaattgtcttatgattcgtgaggtcagcgttgtaaaggcctgttgcttagatgtgatctatatattgttgctaatatgtctcatatccttgtagattccttttcatcttgtaacacgcttgtgggatacctaccttgctgaaggcgattatctaccggattttcttgtatatatatcagctagctttttgttaacggtaagttgaagtaccccttgactgttcataattatttttttcaacttcagtgtatgcaagtgttgcatgcctggtgcaggcaaatgcagttttcacaatgtttctggtgtaaatactaatgtccaagtccattgtaattaagttctctctttatttctacctcagtggtcagacaagctgaagaaacttgattttcaagagatggtcatgttccttcagcaccttccgacgaggaactgggctcaccatgagcttgagatggtgctctccagggcttacatgtggcacacaatgttcaaaagctcgccaagtcacctcgccagctaggatacccgataatcatatctgtaatctatgacctgattttgatgtactctagacttgtcccctttggggaaggaaccatgaggagacttcttttgttttcagtgcatactatcaattgtaacactacccccaatctgtatattttacttacagattattatcaatgatgatgaatagatggcattcaatttgtgtatt</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0515800, RefSeq:Os09g0515800