Os01g0613500

From RiceWiki
Revision as of 18:54, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0613500

Description

Peptidase C1A, papain family protein

Version

NM_001050097.1 GI:115438529 GeneID:4325325

Length

1655 bp

Definition

Oryza sativa Japonica Group Os01g0613500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:26000364..26002018

Sequence Coding Region

26000652..26001259,26001513..26001987

Expression

GEO Profiles:Os01g0613500

Genome Context

<gbrowseImage1> name=NC_008394:26000364..26002018 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:26000364..26002018 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcacgggttcccgtctctcgccaccttcgcgtcgcgctgcttgctctcctcgtggtcgccgtcgccgccgcggcggcggcgcgcggggatcagccgcgtcgcgggcatagcatggccgcgcggcacgagcggtggatggctaggttcgggcgcgcgtacgcggacgccgccgagaaggcgcggcggatggaggtgttcgcggccaacgcggagcgcgtcgacgccgccaaccgcgcgggcggcgaccgcacctacacgctcggcctcaaccagttctccgacctcaccgacgacgagttcgcgcagacgcacctcgggtacagctgggcgccgccgccgccgtcgcaccggcatggccaccgcgccgagaatggcaccgccgcggcggcggcggatgacacggacgtgccggacagcgtcgactggagggctcgcggcgccgtcaccgaggtcaagaaccaacgcagctgcgggagttgctgggcgttcgcggcggtggcggcgacggaggggctcgtccagctcgccacgggcaacctcgtgtcgctctcggagcagcaggtgctcgactgcaccggcggcgccaacacctgcagcggcggcgacgtgtccgcggcgctccgctacatcgccgcgagcggcgggctgcagacggaggcggcctacgcgtacggcgggcagcagggcgcgtgccgcgccggcgggttcgccgcgccgaactcggcggcagccgtcggcggcgcccggtgggcgcgcctgtacggcgacgagggcgcgctgcaggcgctcgccgccgggcagccggtggtcgtggtcgtggaggcctccgagccggacttccggcactacaggagcggggtctacgccgggagcgccgcgtgcgggcggcggctcaaccacgccgtcacggtggtgggctacggcgcggcggcggacggcggcggggagtactggctggtgaagaaccagtgggggacgtggtggggcgagggcggctacatgcgcgtcgcgcgcggcggcgccgccggcggcaactgcggcatcgccacctacgccttctacccgaccatggacagctag</cdnaseq>

Protein Sequence

<aaseq>MARVPVSRHLRVALLALLVVAVAAAAAARGDQPRRGHSMAARHE RWMARFGRAYADAAEKARRMEVFAANAERVDAANRAGGDRTYTLGLNQFSDLTDDEFA QTHLGYSWAPPPPSHRHGHRAENGTAAAAADDTDVPDSVDWRARGAVTEVKNQRSCGS CWAFAAVAATEGLVQLATGNLVSLSEQQVLDCTGGANTCSGGDVSAALRYIAASGGLQ TEAAYAYGGQQGACRAGGFAAPNSAAAVGGARWARLYGDEGALQALAAGQPVVVVVEA SEPDFRHYRSGVYAGSAACGRRLNHAVTVVGYGAAADGGGEYWLVKNQWGTWWGEGGY MRVARGGAAGGNCGIATYAFYPTMDS</aaseq>

Gene Sequence

<dnaseqindica>760..1367#32..506#acaagtcacaagcaacacagagtgaaaaaaaatggcacgggttcccgtctctcgccaccttcgcgtcgcgctgcttgctctcctcgtggtcgccgtcgccgccgcggcggcggcgcgcggggatcagccgcgtcgcgggcatagcatggccgcgcggcacgagcggtggatggctaggttcgggcgcgcgtacgcggacgccgccgagaaggcgcggcggatggaggtgttcgcggccaacgcggagcgcgtcgacgccgccaaccgcgcgggcggcgaccgcacctacacgctcggcctcaaccagttctccgacctcaccgacgacgagttcgcgcagacgcacctcgggtacagctgggcgccgccgccgccgtcgcaccggcatggccaccgcgccgagaatggcaccgccgcggcggcggcggatgacacggacgtgccggacagcgtcgactggagggctcgcggcgccgtcaccgaggtcaagaaccaacgcagctgcggtgagaaccactcccgaacacaaacacgtcgatggcatagctcacgcagtggcgtatctcgaaaattgattcgttggtatcataacgtatctactaataccataatatgctaattatacttagatcatgatgttataatacatggataaacagtttaactacaggtttactgaaagtcgtcggtgtcgtgtcgtctgacaccggccgttacactgtagatcagctcatgtgtactgtacggcgttcgttgcagggagttgctgggcgttcgcggcggtggcggcgacggaggggctcgtccagctcgccacgggcaacctcgtgtcgctctcggagcagcaggtgctcgactgcaccggcggcgccaacacctgcagcggcggcgacgtgtccgcggcgctccgctacatcgccgcgagcggcgggctgcagacggaggcggcctacgcgtacggcgggcagcagggcgcgtgccgcgccggcgggttcgccgcgccgaactcggcggcagccgtcggcggcgcccggtgggcgcgcctgtacggcgacgagggcgcgctgcaggcgctcgccgccgggcagccggtggtcgtggtcgtggaggcctccgagccggacttccggcactacaggagcggggtctacgccgggagcgccgcgtgcgggcggcggctcaaccacgccgtcacggtggtgggctacggcgcggcggcggacggcggcggggagtactggctggtgaagaaccagtgggggacgtggtggggcgagggcggctacatgcgcgtcgcgcgcggcggcgccgccggcggcaactgcggcatcgccacctacgccttctacccgaccatggacagctagctcaactgagcactggacagtgaacactagactgatgcaaatatgtactaatattgataagaatgttacgcctaatgcaaatatgtaatatgtgtgggcgtctggcttctaagtgataagctattaagccatagttaaggagtatatagtagataaaatgattatgaaaccagaactgtatcgacatatgcagttaaagaaactgatgtcggtaatggatggagcaaataagcacttgtacacattaagaaaagatgattcagaaaattcaggacatgcttattgcgc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0613500, RefSeq:Os01g0613500