Os06g0657500

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Revision as of 09:29, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0657500| Description = Similar to ANT (Ovule development protein aintegumenta)| Version = NM_001064791.1 GI:115469313 GeneID:4341722| Lengt...")
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Gene Name

Os06g0657500

Description

Similar to ANT (Ovule development protein aintegumenta)

Version

NM_001064791.1 GI:115469313 GeneID:4341722

Length

3696 bp

Definition

Oryza sativa Japonica Group Os06g0657500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:27902490..27906185

Sequence Coding Region

27902607..27902721,27902870..27903161,27903445..27903527,27903686..27903694,27903805..27903893
,27904133..27904206,27904438..27904488,27905167..27905243,27905349..27905968

Expression

GEO Profiles:Os06g0657500

Genome Context

<gbrowseImage1> name=NC_008399:27902490..27906185 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:27902490..27906185 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacatggacatgagctcggcttatcctcaccattggctctccttctccctctctaacaactaccaccatggcctccttgaggccctctctaccacatctgcacctccacttggagaggaggggccagcggagggcgctccgaagatggaggatttcctcggcggcctaggcggaggcggcggcgccgtcgccgccgctccggcagctgccccggaggatcagctcagctgcggcgagcttggtagcatcgccgccgggttcttgcgccggtacccagcgcctgagaacgccggcggggtgaccatcgcaatggcgaccgacgcggcggcggagctggccgatccggcgaggaggaccgccgagacgttcgggcaacggacgtccatctaccgtggtgtcactaggcaccggtggacggggaggtacgaggcgcacctgtgggacaatagctgccgccgggaaggccaaagccgcaaaggccgccaagtctacttaggaggttatgataaggaggagaaggccgcaagagcttacgacctcgccgccctaaagtactggggtccaaccaccacgacgaacttccctgttgccaactacgagacggagctggaggagatgaagtccatgacgcggcaggagttcatcgcgtcgctgcgcaggaagagcagcggcttctcaagaggggcttccatctacagaggagtaacaagacatcatcagcacggccggtggcaagcgaggatcggcagggtggccggaaacaaggacctgtacttgggcactttcagcacgcaggaggaggctgccgaggcgtacgacattgccgctatcaagttcagggggctcaacgccgtcaccaacttcgacatgagccgctacgacgtcgacagcatcctcaacagcgacctgccggtcggcggcggagccgccacgcgcgcctctaagttcccctctgacccatcgctgccgctgccgtcgcctgccatgccaccgtcggagaaggactactggtccctccttgccctgcactaccaccaccaccagcagcagcagcagcagcagcagtttcctgcttctgcatttgacacctacggctgctcctccggcgtgaacgtggacttcacaatggggactagcagccacagcggcagcaacagcaacagcagcagcagcagcgccatatggggcacagccgccggcgcagcgatggggaggcagcaaaacggcggcagcagcaacaagcagagcaacagctactccggtaacaacattccttatgctgctgcagcagctatgacttctggatcagcactctacgggggctccaccggtagcaacgggacatgggtggcgagtaacacgagcacggctccccacttctacaactatttgtttgggatggagtag</cdnaseq>

Protein Sequence

<aaseq>MDMDMSSAYPHHWLSFSLSNNYHHGLLEALSTTSAPPLGEEGPA EGAPKMEDFLGGLGGGGGAVAAAPAAAPEDQLSCGELGSIAAGFLRRYPAPENAGGVT IAMATDAAAELADPARRTAETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRK GRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVANYETELEEMKSMTRQEFIAS LRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIA AIKFRGLNAVTNFDMSRYDVDSILNSDLPVGGGAATRASKFPSDPSLPLPSPAMPPSE KDYWSLLALHYHHHQQQQQQQQFPASAFDTYGCSSGVNVDFTMGTSSHSGSNSNSSSS SAIWGTAAGAAMGRQQNGGSSNKQSNSYSGNNIPYAAAAAMTSGSALYGGSTGSNGTW VASNTSTAPHFYNYLFGME</aaseq>

Gene Sequence

<dnaseqindica>118..232#381..672#956..1038#1197..1205#1316..1404#1644..1717#1949..1999#2678..2754#2860..3479#agcacaacactggtctacatcgatcaatagctttatagttatccttccctctcataagctcaaacaaacgctggtcaagtgctcttcaagatcggcgcatcgatcatatctatcgccatggacatggacatgagctcggcttatcctcaccattggctctccttctccctctctaacaactaccaccatggcctccttgaggccctctctaccacatctgcacctccacttggtaatatatgagcatctcaaataatgcactattcataatctttcatgtgcatgcatgtttgctaaactaatgccatgtggattagtaggacatgcatctgtgttcatcatcactaagtatcattatttttctgtgttttctggtgtaggagaggaggggccagcggagggcgctccgaagatggaggatttcctcggcggcctaggcggaggcggcggcgccgtcgccgccgctccggcagctgccccggaggatcagctcagctgcggcgagcttggtagcatcgccgccgggttcttgcgccggtacccagcgcctgagaacgccggcggggtgaccatcgcaatggcgaccgacgcggcggcggagctggccgatccggcgaggaggaccgccgagacgttcgggcaacggacgtccatctaccgtggtgtcactaggtatatatattttgcgataacacatggatccatagagatgatctatctatctaatctagctactcgatcccagctctcacagcgcccaaatagctaggtgcatgcatgcatgtagttagttatactactagcagtacactaacgacactagtagtcgttcatggttaaaatgtcattttaacttatagctaaaaataatcatgcaagcatgacaatgagctgaaaaataatataatcaacaagtttttgataagggatgttgggtattgggaaaatgcatcaggcaccggtggacggggaggtacgaggcgcacctgtgggacaatagctgccgccgggaaggccaaagccgcaaaggccgccaaggtttgtgcatgcatgtcataacccatatccaacaaattaatctgcaaattttagcatatggacgttacattgttgatcactaattaacatttgtacctgcttttctccaacctaatttctcgcctgttggcggaccgccggtgatgatactccatcagtctacttaggtatgtcgtcattatttgcaacatctatatatcttaattagttagtttcttttccattcgttcaccttgagacttactgtaaaagttgggggattaaacaaaactttcaggaggttatgataaggaggagaaggccgcaagagcttacgacctcgccgccctaaagtactggggtccaaccaccacgacgaacttccctgtaagtacttgttgcaacagtcaacttattattgccagccccatcaattaatacattattcgatctttacacatatggcatgcatgtatgtgcttatcctggtcgctgaggagatagtagagtactagttatatacagtcaacgttcatacatgtattatacgatgtactacgatacgtgtactcgtacattcgtacttacctagtgataaatttacctgcaccgatcgatgactgtaggttgccaactacgagacggagctggaggagatgaagtccatgacgcggcaggagttcatcgcgtcgctgcgcaggtgagacgaaacagtagtcatccggaaagtttatttatttatttattttggagaagcagcagtaatccagagtcacatgcttaggagaaacaacccttttccacgtacaccttgccatacgcgtgtacgcgtgcgtgcacgtacggctgcgcactgcttttactgttctcacacttgtcacatgttgacctcattgtgtgtgttccaactctgttttcttttttttttcaggaagagcagcggcttctcaagaggggcttccatctacagaggagtaacaaggtataagattgagttacaacaataaatatctccctgaaatacttagtatggtagtatcaagttgcatcattcggagcactagctactactaggtaagtatattctgctgggtcacatattcggtgaaaaccatcaaataaatgaaaatctataataactagatctgttttaacctaaaatttgtcttttcacctaaaagttgagtatagatttgagatttagtacaaacgaattttatgcctagatttatctccaataattttttcatcaatttaaagaatttgtaggtacgactttcatggattttcacttattcgattgttaattttcactagatattccccatcctatactacggtaaaaaaacattagccctccttctcttcccttatcctgtgtataaaaaaaaccgctacagaaacaaactggtgcatccgtgattagccaagaaaaaaaaattaaaaaatttaaaaccttatctcccatatcaaattaaaccacgttctataaattccgttataccacacgggcatgcgactagtttggggacaaaattctagaagttctagtttttgaactctagtatcaagttgcagcattcagagccgctcttcttttttttttcttttcttagtaaaaaaaaactgtgacaatgggagcctaatgtttggagtgcagacatcatcagcacggccggtggcaagcgaggatcggcagggtggccggaaacaaggacctgtacttgggcactttcagtaagctagcctcgatcttttcaaatacatataaacaaacgctaagaccattgagatgcatggttgttggcaaattttcctaaatgtcccatgcaccgcgcgcaggcacgcaggaggaggctgccgaggcgtacgacattgccgctatcaagttcagggggctcaacgccgtcaccaacttcgacatgagccgctacgacgtcgacagcatcctcaacagcgacctgccggtcggcggcggagccgccacgcgcgcctctaagttcccctctgacccatcgctgccgctgccgtcgcctgccatgccaccgtcggagaaggactactggtccctccttgccctgcactaccaccaccaccagcagcagcagcagcagcagcagtttcctgcttctgcatttgacacctacggctgctcctccggcgtgaacgtggacttcacaatggggactagcagccacagcggcagcaacagcaacagcagcagcagcagcgccatatggggcacagccgccggcgcagcgatggggaggcagcaaaacggcggcagcagcaacaagcagagcaacagctactccggtaacaacattccttatgctgctgcagcagctatgacttctggatcagcactctacgggggctccaccggtagcaacgggacatgggtggcgagtaacacgagcacggctccccacttctacaactatttgtttgggatggagtaggtggacttactggctctattagcttcattagctgaaacgagtggtaggcctaggactgacatggaactgatcaaaagttttggctgctgatgcatgcaggaatgcaatgcaatgcatccttaagattattcttttgcttccctgacatagtcctgtagcagagaaactcatgtatcaccagtgtttctaattcaagctcatttttttaactagttcc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0657500, RefSeq:Os06g0657500