Os06g0661000

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Revision as of 09:30, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0661000| Description = Plant MuDR transposase domain containing protein| Version = NM_001064808.1 GI:115469347 GeneID:4341742| Length = 481...")
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Gene Name

Os06g0661000

Description

Plant MuDR transposase domain containing protein

Version

NM_001064808.1 GI:115469347 GeneID:4341742

Length

4815 bp

Definition

Oryza sativa Japonica Group Os06g0661000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:28119826..28124640

Sequence Coding Region

28120054..28122792

Expression

GEO Profiles:Os06g0661000

Genome Context

<gbrowseImage1> name=NC_008399:28119826..28124640 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:28119826..28124640 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcggcatttagagtgtatttcagtgaaggtgaaattatggaaaatgaaagtggtgtcaatctgagcaactttaggcaatgcacactataccatccaaatcctgacacccttaccatgcccgaagtttggtactggctaacatgcacattttctttagatccgggtatatatagtgttaacgtgagggttatgtggagccgatcggccaacaacataagatgggagttaaaaaatgtgacacggagtaaggcctggcaggattggctcgctggctgcaggagacggggatatgaatatgtcatgctggtgcaagcatgtcaaggaagagtccccacggagagcgcagcggggcaatccagcaaccgtgaggagttggggtctagttcacacgaagaagatgaagttgtagctccccatcatggtggcgatgttggtcctgacattcaaaatctatccatacaaggagatgaagtggtcaaccgccatcctactggtgaagccgatgaaggggaggacatacctgctatagttgaagaaattgagagggtggaccgacatgcaatcgaagatgaggaaaacctcgctgctgaagagaatgatgacgaggatgaacaagaagttgaggaagttcctatgcctgcttcgtggaaccttgaagaccctggttatattgcagaaaactcttgtcatgattcaatatggttctacggggatggccaaatcaatctgggtgcaatgttccgtgacaaaacggggttgcaagacgcagtgaagtcatggtcattcaagacgcaaaggcagttcagggttgtgaagtctaacaagactgagtacacggtcgtcttccgtcttcatggtcacgtgccaaagtacgagtcttactggattctgtccaaactgcaggaacactcctgtctgattcggaacactagggagtcgcaccgcaacctgaccgcggcatacgttgcgaacaagtactacaaggaaattattgaaggtgatgacctgcctgtgcggcacataataaaactggtggagaaaggtgaacaatacacaattagttaccacaaggcttggagggcgaaacaaaaggccatggagaaaagatatgggacatttgaggaagcatacgacactctgtcacagatgcttaacattctgaagatcaggaaccctaggacctatgttgctgtgcaggatcgggagtcaattcgtcctccaaattatcttgtgatgcaacgggcattctttgcattcggagcatgcattcttgcgttccagtgctcgaggccggtgctgtgtgtcgacggtactttcctaactgggaagtaccgaggccaaatattaacagctgttggtgcggatgcgaacaaccagataattccagtagcttttgcttttgttgaaagcgagaattacgaaagctggttgtggttcttgcaacatctaaagtggggagtggtgcaaaaacgcacatcgatatgcatcatccatgaccggaatgccggtctgttgaaggcaatcaaagagctccaggaggatggtgatggtgcatactactggcctgacatgcacagccgttggtgcatgcggcacatgggagccaattttttcaaacaattcaacaaccggcgtctgatgaacatgttcaagcggttgtgcaaggcaaatcagtccacaaagttcgatgagctttggaaacaacttgacgaggtgacaaggacacatatccggtcaaagcagaccaacatcaacctgctggatgtacatgtcccccaggccctggaaccaatggatgatcttattccatcaaatggaaagaagcgtaggtcatcaaagaatatcaaatgttttacccattggattgagtgcgagccgaatgataagtgggcactcctgcatgacactaatggggctaggcatggcataatgaccactaatcttgcagaggcgtacaatgtggttcttagcaaattaaggcctttacctctgactgctattgttgaaggcattatgcacaggacaacgatgtggatgaggacgaggcgggccgcggcgttgcaacaaatgtctaatgcacaaacacctttctgcaaaaagatggcagagtacctccaagagaaggctaacaaggccagatttcacacggtcattaccactgggaacgtaagacgaaggtgggaagtcacatgtcgcactaagggggattttggatcttctactggggtcatcactcatgaagttactctagggcacgaatctgataacacatgttcgtgctcttgcaataagccgaagcttcttcataagccatgtagccatgtcctggccgcatgcgctaaaattaagcttgattcaacatcatacgtgtcgacgttctacctaaaggatagagttctaaatgcatggagtgctgagatcctcgggtggaggtccctccaacacctagtcgaaactgggggtgataacaggatctatgtgccagacttggatttgttgaaggccggtaagggtagaagacaaacacgtcgcttaagaaatgatatggatgcatccgaagcgggagggcctgtaaggcgatgtgagaactgtcttcagtacgggcaccgcactagagattgcaagaataacaaggagggtacatcttcaaccatggaacctatgcaacaacgtgcgaggaggaatagaaggggctctcagggtgctcacgatagggaggaaggaaacctgcagtag</cdnaseq>

Protein Sequence

<aaseq>MSAFRVYFSEGEIMENESGVNLSNFRQCTLYHPNPDTLTMPEVW YWLTCTFSLDPGIYSVNVRVMWSRSANNIRWELKNVTRSKAWQDWLAGCRRRGYEYVM LVQACQGRVPTESAAGQSSNREELGSSSHEEDEVVAPHHGGDVGPDIQNLSIQGDEVV NRHPTGEADEGEDIPAIVEEIERVDRHAIEDEENLAAEENDDEDEQEVEEVPMPASWN LEDPGYIAENSCHDSIWFYGDGQINLGAMFRDKTGLQDAVKSWSFKTQRQFRVVKSNK TEYTVVFRLHGHVPKYESYWILSKLQEHSCLIRNTRESHRNLTAAYVANKYYKEIIEG DDLPVRHIIKLVEKGEQYTISYHKAWRAKQKAMEKRYGTFEEAYDTLSQMLNILKIRN PRTYVAVQDRESIRPPNYLVMQRAFFAFGACILAFQCSRPVLCVDGTFLTGKYRGQIL TAVGADANNQIIPVAFAFVESENYESWLWFLQHLKWGVVQKRTSICIIHDRNAGLLKA IKELQEDGDGAYYWPDMHSRWCMRHMGANFFKQFNNRRLMNMFKRLCKANQSTKFDEL WKQLDEVTRTHIRSKQTNINLLDVHVPQALEPMDDLIPSNGKKRRSSKNIKCFTHWIE CEPNDKWALLHDTNGARHGIMTTNLAEAYNVVLSKLRPLPLTAIVEGIMHRTTMWMRT RRAAALQQMSNAQTPFCKKMAEYLQEKANKARFHTVITTGNVRRRWEVTCRTKGDFGS STGVITHEVTLGHESDNTCSCSCNKPKLLHKPCSHVLAACAKIKLDSTSYVSTFYLKD RVLNAWSAEILGWRSLQHLVETGGDNRIYVPDLDLLKAGKGRRQTRRLRNDMDASEAG GPVRRCENCLQYGHRTRDCKNNKEGTSSTMEPMQQRARRNRRGSQGAHDREEGNLQ</aaseq>

Gene Sequence

<dnaseqindica>1849..4587#gaggaagacagaagggagtgaactgaggagaggaagagcaagagaagagaggaggcagtgcatgcagtggagagaaggaaaaaaagacacgtaagttgattagttttctattagcacaaattcgtacgatgaggatttagaaaatattagttcacgtagttaatatttgtttgtaattatgtcagagaaaaatttaggtatgtattagttacaactacattatattttgttaggtcgtatgtaaaaatagaaatgtagaatgttaatagagtcgattcgggttaaaatatagatagacataattaatttataaggtacataagtataatataagttagaattaatttgtacgtagtagtaattataagttataattaattagtagttcatgtgatgtttaattttatatatacgaccaatattatatgtaagaaatgaaaaaaaataaaatattaatagttatatttgtagttattgatattgatattaatagtattgataattattaaatgtggtacaaaaaattaaattaaagttgtaattaatttgtagtaattttaagttacaattacttagtagttcatgcatttatttattttgtgagaaatggaaaaggtataaatattcgttaagtagcgggaaatatatggtgtgcttaaacacgtgctttacattgtaggttgttacgaacgaacaaataaatgcagtagtacgaagaactttgaaattgggacttttatatgagcaaattggttgaaaagaagaaggcaagacaaggtatggtactataatggaagacagtttgtaattaatagacagtttgtaatttatttgatattgtaattaaagtgcagttaaataaatttatgtcgctgcaaatagttttatactataataaattggtagttatgattaatttgattatgtaattaatcaagtgaagttaaacttagttctattaatttatcatgttatgataaatttatagataattttgtactaactgatagttacaaatattttgtatttaagtaaagttacggtccgttagataatttatagttaaagtagtaatatattaaatgtactcatccaaatttgcaatagtagtattgtttcggtggtcatatctaagtaggtacaaacagtccgtagcaaagaacatgatgcggctcaatgagtgtcattgtcctagataaagaatagaaagagctaaccaaaatgatttttaacttagcttccttcaatgtttcttcggtgcaagtagtcatttgttgtattaaaattaattgatatgtataattaatttgttagttaaacatatggattatgcagtgaactaaactttgaggcagcaattgttatacgagcaagctggttaaaaaggagtaggcggtatctaataaacgcaggtaaatattttgtcatcatatttatgtacgatatggtatggttgtgttgttttaagtattacatactcttttacttaaattaattgccatagttatgtttaattatgtttttttaattaattaatatgtattaattttactgtcatgtgtatattttgtatgtcaaagttgtagtaaaattataaataatgaattgcattgtcatgtattcgtaagtaaataatttatgttcacgcaattatttatttataaattttttattacaagtacatgatttttttataaataatatggaaatataaataagtagttattgatacagaattttttatcaaaaaaaacagtatgcgtgtaaactaattttggtcgcgaataggacacgtttgttctgttagacttccttacggactagtccgtgttgtctgcaatggcaggaatgtcggcatttagagtgtatttcagtgaaggtgaaattatggaaaatgaaagtggtgtcaatctgagcaactttaggcaatgcacactataccatccaaatcctgacacccttaccatgcccgaagtttggtactggctaacatgcacattttctttagatccgggtatatatagtgttaacgtgagggttatgtggagccgatcggccaacaacataagatgggagttaaaaaatgtgacacggagtaaggcctggcaggattggctcgctggctgcaggagacggggatatgaatatgtcatgctggtgcaagcatgtcaaggaagagtccccacggagagcgcagcggggcaatccagcaaccgtgaggagttggggtctagttcacacgaagaagatgaagttgtagctccccatcatggtggcgatgttggtcctgacattcaaaatctatccatacaaggagatgaagtggtcaaccgccatcctactggtgaagccgatgaaggggaggacatacctgctatagttgaagaaattgagagggtggaccgacatgcaatcgaagatgaggaaaacctcgctgctgaagagaatgatgacgaggatgaacaagaagttgaggaagttcctatgcctgcttcgtggaaccttgaagaccctggttatattgcagaaaactcttgtcatgattcaatatggttctacggggatggccaaatcaatctgggtgcaatgttccgtgacaaaacggggttgcaagacgcagtgaagtcatggtcattcaagacgcaaaggcagttcagggttgtgaagtctaacaagactgagtacacggtcgtcttccgtcttcatggtcacgtgccaaagtacgagtcttactggattctgtccaaactgcaggaacactcctgtctgattcggaacactagggagtcgcaccgcaacctgaccgcggcatacgttgcgaacaagtactacaaggaaattattgaaggtgatgacctgcctgtgcggcacataataaaactggtggagaaaggtgaacaatacacaattagttaccacaaggcttggagggcgaaacaaaaggccatggagaaaagatatgggacatttgaggaagcatacgacactctgtcacagatgcttaacattctgaagatcaggaaccctaggacctatgttgctgtgcaggatcgggagtcaattcgtcctccaaattatcttgtgatgcaacgggcattctttgcattcggagcatgcattcttgcgttccagtgctcgaggccggtgctgtgtgtcgacggtactttcctaactgggaagtaccgaggccaaatattaacagctgttggtgcggatgcgaacaaccagataattccagtagcttttgcttttgttgaaagcgagaattacgaaagctggttgtggttcttgcaacatctaaagtggggagtggtgcaaaaacgcacatcgatatgcatcatccatgaccggaatgccggtctgttgaaggcaatcaaagagctccaggaggatggtgatggtgcatactactggcctgacatgcacagccgttggtgcatgcggcacatgggagccaattttttcaaacaattcaacaaccggcgtctgatgaacatgttcaagcggttgtgcaaggcaaatcagtccacaaagttcgatgagctttggaaacaacttgacgaggtgacaaggacacatatccggtcaaagcagaccaacatcaacctgctggatgtacatgtcccccaggccctggaaccaatggatgatcttattccatcaaatggaaagaagcgtaggtcatcaaagaatatcaaatgttttacccattggattgagtgcgagccgaatgataagtgggcactcctgcatgacactaatggggctaggcatggcataatgaccactaatcttgcagaggcgtacaatgtggttcttagcaaattaaggcctttacctctgactgctattgttgaaggcattatgcacaggacaacgatgtggatgaggacgaggcgggccgcggcgttgcaacaaatgtctaatgcacaaacacctttctgcaaaaagatggcagagtacctccaagagaaggctaacaaggccagatttcacacggtcattaccactgggaacgtaagacgaaggtgggaagtcacatgtcgcactaagggggattttggatcttctactggggtcatcactcatgaagttactctagggcacgaatctgataacacatgttcgtgctcttgcaataagccgaagcttcttcataagccatgtagccatgtcctggccgcatgcgctaaaattaagcttgattcaacatcatacgtgtcgacgttctacctaaaggatagagttctaaatgcatggagtgctgagatcctcgggtggaggtccctccaacacctagtcgaaactgggggtgataacaggatctatgtgccagacttggatttgttgaaggccggtaagggtagaagacaaacacgtcgcttaagaaatgatatggatgcatccgaagcgggagggcctgtaaggcgatgtgagaactgtcttcagtacgggcaccgcactagagattgcaagaataacaaggagggtacatcttcaaccatggaacctatgcaacaacgtgcgaggaggaatagaaggggctctcagggtgctcacgatagggaggaaggaaacctgcagtagttataacctacactgtccggttatttatgttcggtcatgatatgttcgctgcatgacgttgtatttcaataagtttgtaatatgttagtcaataagtatgtgtaatatttattttattatggtaatgttgtaagattttattgtaaggtgttaccaagtttgtaacgtttgtaatcctattgttgtactatttatttcaatgatattgctcgagtttgtacttgtact</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0661000, RefSeq:Os06g0661000