Os01g0819200

From RiceWiki
Revision as of 19:01, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0819200

Description

C2 calcium/lipid-binding region, CaLB domain containing protein

Version

NM_001051173.2 GI:297597867 GeneID:4327448

Length

4653 bp

Definition

Oryza sativa Japonica Group Os01g0819200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:36658150..36662802

Sequence Coding Region

36658150..36658278,36658927..36659052,36659167..36659494,36659715..36659804,36659872..36659948
,36660107..36660181,36660450..36660568,36661828..36661951,36662015..36662065
,36662178..36662276,36662692..36662802

Expression

GEO Profiles:Os01g0819200

Genome Context

<gbrowseImage1> name=NC_008394:36658150..36662802 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:36658150..36662802 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggcatagtcagcatggtgcttagtttcattggattttgcattggattctcagttggtattgttatcggttacttcctcttcatctacttccagccaaccgatgtgaagaatgtcaaagttcgcccactggtggaatatgactcagattctttggatgacacccttcctgaaattcctttgtggctcaagaatcctgactatgatagacttgattggctgaacaggtttttggagttgatgtggccttacctcaacaaggctatctgcagaattgcacaggatgttgcaaatccaatcattgcaaagaacaaagagaagtataaaatagactatattaagtttgaaacatttactttgggtagcttaccaccaaccttccaaggagtgaaagtccaagttacaaatgagcaggagttggttatggaaccctctcttaaatgggcaggaaatcccaataccactgttgttgtaaaggcttacgggttgaaagcaactatccagccacatgttgactttggcctaaaacttcttggagcagatgtaatggctattcctgttctttacaaatttgttcaggagaccatcatggatcaagttgctagcatgtttttatggccaaagacccttgaagtgcctataatggatccctcaaaggcttctaaaaagcctgttggtattctattagtgaaagttttaagagctcaaaatcttcgagagaagggtccgttgggtaaacgagatccatttatttcctttttatatggccagtttggaaaggatgaaaaattgggcatgtgcaagatttcgctgaaaaaacttaccccagggactgaagttataactgataacttgattaagaccatggaaccgaatggtatacagaatgagaagtctgctggtgaaattactctggagctgacatataagcctttcaaggaaggcaatatacagaaagaagatcctggagggctgctttatgttgttgttcatgaagctaaagaacttgaaggaaaatgtaacacgaatccatatgtaaaactaactttcaaaggagtagagaagaaaacaaaggtggtcaaagagaacaggaatccacgatggaaggaagaatttgagtttgagtgtgaggaaacccctgcaaatgataagctacatgttgaagtcctaggtaccaaaaaagcgttgatacgcaataaggaaagtttaggccacattgatattagcctcgcagatgtgatcatcaacaaacggatcattgaaatgtacgatctcatcaactcaaagcgtggccagattcagattgagttccagtggaaatcttcgtag</cdnaseq>

Protein Sequence

<aaseq>MGIVSMVLSFIGFCIGFSVGIVIGYFLFIYFQPTDVKNVKVRPL VEYDSDSLDDTLPEIPLWLKNPDYDRLDWLNRFLELMWPYLNKAICRIAQDVANPIIA KNKEKYKIDYIKFETFTLGSLPPTFQGVKVQVTNEQELVMEPSLKWAGNPNTTVVVKA YGLKATIQPHVDFGLKLLGADVMAIPVLYKFVQETIMDQVASMFLWPKTLEVPIMDPS KASKKPVGILLVKVLRAQNLREKGPLGKRDPFISFLYGQFGKDEKLGMCKISLKKLTP GTEVITDNLIKTMEPNGIQNEKSAGEITLELTYKPFKEGNIQKEDPGGLLYVVVHEAK ELEGKCNTNPYVKLTFKGVEKKTKVVKENRNPRWKEEFEFECEETPANDKLHVEVLGT KKALIRNKESLGHIDISLADVIINKRIIEMYDLINSKRGQIQIEFQWKSS</aaseq>

Gene Sequence

<dnaseqindica>4525..4653#3751..3876#3309..3636#2999..3088#2855..2931#2622..2696#2235..2353#852..975#738..788#527..625#1..111#atgggcatagtcagcatggtgcttagtttcattggattttgcattggattctcagttggtattgttatcggttacttcctcttcatctacttccagccaaccgatgtgaaggtgatcatgtttatctcattcttgctatgtagttattgtatcatttcattttgttgctatgtggtgatacttttgttatttaataactgctctgtcagtagatgtctactcatttaaccaaaaataatctgggaacaatctgaaagcgctgttaagaagaaacacttggggtcactgagtcatcaaggattgatttccttctttgcatatcacattcctaattcaattcttatattctggttctggatatcacacttgtatcacaagttggtgttgtcacttggattagttgcatctctaatgaaatagttctttcacatagtatgtaaatgggacatcattgcaaatactattgctactaatttaatatgttttatgaatcacatggttttttattatcctgactacctctcagaatgtcaaagttcgcccactggtggaatatgactcagattctttggatgacacccttcctgaaattcctttgtggctcaagaatcctgactatgatagagtatgcttcgttcttttaagctattaactgtttgctgaagaaaactcatgcacttgaataatagtaactgtaactattctgatatccttatttttctccgctttgttgttagcttgattggctgaacaggtttttggagttgatgtggccttacctcaacaaggtactcttctgctgtagattgtttctggttgacaataggactaactttgtgttcaacctgtaggctatctgcagaattgcacaggatgttgcaaatccaatcattgcaaagaacaaagagaagtataaaatagactatattaagtttgaaacatttactttgggtagcttaccaccaaccttccaaggtaactggtgttgcgcttttatattctgtttgcatacatgtactatctcttacatcatttctagtgttagatttgaactagaatatacattagaagcaaaccttgttgcatgacgattctacaagcagttatgcttatctagagtagcatgtgagatttacatagagccaaaacttttttaaaaagtagattaatatgattttttaaaaagcaactttcctatagaattttttttataaaaaacacaccatttagcaggttaggaagcgtgcgcgtagaaaacaagggagtgaaggttgagaacctcattatacgaactcaaccaagttgcatgtagatatatttatactaatgtatttaccaaatttggcaacaaactaaacacagatattttttagcaactttgccaaaaaatggtatggttgaaaatggcatcaatctgaacagctcctttataaagtggtggtggtggttctgtcatcaccccaccaccaactccccaatttttttaagagaaaaaaggagaggataaaggcccacatgtcaattactcccaacaactttctgcttcttgtgagaatgaaaaaaaaagaacataatgggatcaaatggtccacatgtcagtaacaaatatgtacgataatttaagagacgataatgatgggttaatgataattttctttaattaaaattccgttgtaacgtatgggcaatttgctagtattattaagatattgctactacttggtttctggctaatttgctatgcattatgtttagcaattggacatattcactagtgatagggttgtacctcttgttattgtttatgaataactagtactccctccgtttcagattataagacgttttgatttaactcaaactactctaagtttgattaattttgtagaaaaagtagtaatatttttaacccaagacaaatatattatgaaaatttattcaattatagatttaatgaatctatgctggtgttgtaaatattactattttttcctacagagttagtcaaactaagagtagtttgactttaaccaaagtcaaaacgtcttataacccgaaacggagggagtataattcattagcggtatatatcaccatacacatatgtagctaactatggcctattagttgtctcataccctgacgttactgtaaattgatcatatgcgattctagttgttttacaagatgttgccaaaaaaaaaaggtaaaacagttcatggtttgtaccccaggagtgaaagtccaagttacaaatgagcaggagttggttatggaaccctctcttaaatgggcaggaaatcccaataccactgttgttgtaaaggcttacgggttgaaagcaactatccaggtcttgaatttttccggtcatgtgcttaaaaagtacagatttcagccaagtgaaaccttcatttttcttacgagatttttcaggttgtggatatgcaagtctttgttttgcctcgtattactctaaagcctttggtgtcttcatttccttgctttgcaaatatccttgtttctctcatggagaaggtttggcaacatattacttgtttttttctattatcagcgtctgctgatctcactccttttcattagttatgttggtgttgcagccacatgttgactttggcctaaaacttcttggagcagatgtaatggctattcctgttctttacaaatttgttcaggtattcctcactattgatttgaaactttttgtgtgaaaatatggtaatagcactgaaattttcattaaacttgctaaacattcccgctggttggaccagtgaaccaattcagtaaaaatactaaaggttgtgaccacttttttttttggcttttgcaggagaccatcatggatcaagttgctagcatgtttttatggccaaagacccttgaagtgcctataatggatccctcaaagtaaagtctttatcactgactgttttcttgaaataactgttactgatttatctccatatattcgcagggcttctaaaaagcctgttggtattctattagtgaaagttttaagagctcaaaatcttcgagagaagggtccgttgggtaaacgagatccgtatgtgaagctcaagatgtcaggtagcaagcttccatccaagaaaacagcagtgaagcacagtaaccttaatccagagtggaatcaagagttcaagtttgtcatcagagaccctgaaactcaggaactggatattaatgtcttcgactgggaacaggcatggaatacttagcatttcctgtgttattcttctcttgttccatgttactaaatactgcagatttatttcctttttatatggccagtttggaaaggatgaaaaattgggcatgtgcaagatttcgctgaaaaaacttaccccagggactgaagttataactgataacttgattaagaccatggaaccgaatggtatacagaatgagaagtctgctggtgaaattactctggagctgacatataagcctttcaaggaaggcaatatacagaaagaagatcctggagggctgctttatgttgttgttcatgaagctaaagaacttgaaggaaaatgtaacacgaatccatatgtaaaactaactttcaaaggagtagagaagaaaacaaaggtattaatctttaaaatattatgcacttcagtacaatatcaccactggactatgatattatcccatgccccacaaaaaaaataaaaacccacaaaattcttcctctctttgtaggtggtcaaagagaacaggaatccacgatggaaggaagaatttgagtttgagtgtgaggaaacccctgcaaatgataagctacatgttgaagtcctaggtaccaaaaaagcgttgatacgcaataaggtatagttttgttcatgaaattctgccagttaggccccattcattttagatgatagattataacaattatttagtggcagtaactaccgaaataattatttaaaagttaaaaaatggatttagaaaagcattttaagaaatatctatatagaaagttcttccaaaaatcgcacctataagagcttagggaacacgcctacgataatctagtactccctctatcaaaaaaaaccaaaccctagcatcccaagaaactatgttggaaagaaataaaagatcataatacctttaattaatgtaaaagttatattgattgataggtaggtgaggggtattgaagtaataaaatttctcgatttgcagattggtggtaggtaagaagttagaagttggtttattttaggacaaatttcaaactctacgagttgatttattttggaacggaggaagtattctcgtagctgaactagcattgtctctactcgaaatatgttgctgcgttgtcttcttgtggattatctacttcaatgagtgtatccatatggttggaaacattactgtaattgtcaagatttacttgcttgaattctgccaaataaattgaagactactgcaaatgtattacactgatgcgtttctttttatcaggaaagtttaggccacattgatattagcctcgcagatgtgatcatcaacaaacggatcattgaaatgtacgatctcatcaactcaaagcgtggccagattcagattgagttccagtggaaatcttcgtag</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0819200, RefSeq:Os01g0819200