Os01g0875000

From RiceWiki
Revision as of 19:03, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0875000

Description

Conserved hypothetical protein

Version

NM_001051496.1 GI:115441362 GeneID:4324774

Length

1363 bp

Definition

Oryza sativa Japonica Group Os01g0875000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:39724819..39726181

Sequence Coding Region

39725019..39725648,39725804..39726130

Expression

GEO Profiles:Os01g0875000

Genome Context

<gbrowseImage1> name=NC_008394:39724819..39726181 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:39724819..39726181 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaacgccttcttcacgtcgctggcgagagggctggacgacctgagcagcggcggcgggctgtcgtcgctgccggcgctgctgcgggcggcggcgctgctcagggggctgcactcgcagctcacgctgctggtggggcagctccacctgccgcccggtgggcggtggctcgacgagtacatggacgagaccgcgcggctctgggaggcttgcctcgccgtcaaggtcggccttgccgccgtcgagcggtattgcgctgccgcgtcttgtgctgcggccgccatggatgactggctccaggacccttcccctctctccactcgccaggtgatgagggcgatctctgcgtcgaggagggaggccatggcggcggaggaggagaaccgtgcgctgtcggaggcgaggatcgcgccgctgtcgctgcagctcgacgagcggctgctgctgcgcgccgcggacgccaggttgagcggcttcaacggcttccgcggcctgctctacgcgctgcacaacgccagctcgctgctgctcctcgtcctcgcctccggcgccgtctcctgcgccgccgccgcagcggggccgtgctccgcggatggcgccgcggacgccggcgggttcgtggcgtccatcgcaatgctgcagcagaggatggcggaggaggccgacgccgacggtagcgccggcgcggcgcgggggggcatccggatgtacgagttccggtgcgcgcgcgccgccgtggaggcggcgcacgaggaggtggagcgcgccgtggcggcgggcccccgcaagcagcagtgcgaggacggcgacggcggcgtcaaggacaaggtcgacgagctcaaggcgtggctcgacgtgctccggaccggcaccgacggcctcgtctgccagctcgacgacttcctcgacgacattgtcgagggcaggaaggagctctccgacctttgcagccactga</cdnaseq>

Protein Sequence

<aaseq>MNAFFTSLARGLDDLSSGGGLSSLPALLRAAALLRGLHSQLTLL VGQLHLPPGGRWLDEYMDETARLWEACLAVKVGLAAVERYCAAASCAAAAMDDWLQDP SPLSTRQVMRAISASRREAMAAEEENRALSEARIAPLSLQLDERLLLRAADARLSGFN GFRGLLYALHNASSLLLLVLASGAVSCAAAAAGPCSADGAADAGGFVASIAMLQQRMA EEADADGSAGAARGGIRMYEFRCARAAVEAAHEEVERAVAAGPRKQQCEDGDGGVKDK VDELKAWLDVLRTGTDGLVCQLDDFLDDIVEGRKELSDLCSH</aaseq>

Gene Sequence

<dnaseqindica>534..1163#52..378#agacgcatcgatcgaccggtgttcgatctttcttgctgtggggatttcgccatgaacgccttcttcacgtcgctggcgagagggctggacgacctgagcagcggcggcgggctgtcgtcgctgccggcgctgctgcgggcggcggcgctgctcagggggctgcactcgcagctcacgctgctggtggggcagctccacctgccgcccggtgggcggtggctcgacgagtacatggacgagaccgcgcggctctgggaggcttgcctcgccgtcaaggtcggccttgccgccgtcgagcggtattgcgctgccgcgtcttgtgctgcggccgccatggatgactggctccaggacccttcccctctctccactcgccaggttggttggttgcgaaacgtgtttgtttctgtgctgcgacacgccattagtggttcttgctctgtttgtgtgtttgatcgattgatcgctactatgtgttctttgttggatgctctgtttttttgtgtttatggagatttgtttgatcggtgcaggtgatgagggcgatctctgcgtcgaggagggaggccatggcggcggaggaggagaaccgtgcgctgtcggaggcgaggatcgcgccgctgtcgctgcagctcgacgagcggctgctgctgcgcgccgcggacgccaggttgagcggcttcaacggcttccgcggcctgctctacgcgctgcacaacgccagctcgctgctgctcctcgtcctcgcctccggcgccgtctcctgcgccgccgccgcagcggggccgtgctccgcggatggcgccgcggacgccggcgggttcgtggcgtccatcgcaatgctgcagcagaggatggcggaggaggccgacgccgacggtagcgccggcgcggcgcgggggggcatccggatgtacgagttccggtgcgcgcgcgccgccgtggaggcggcgcacgaggaggtggagcgcgccgtggcggcgggcccccgcaagcagcagtgcgaggacggcgacggcggcgtcaaggacaaggtcgacgagctcaaggcgtggctcgacgtgctccggaccggcaccgacggcctcgtctgccagctcgacgacttcctcgacgacattgtcgagggcaggaaggagctctccgacctttgcagccactgatcgatcgactgcaacaccatcatcatcgccatggatgatggcatgaaatgcttcatgcttcgcgtggtagagtactcgtactgtacgtagtagtagcaagcataatcttcagtagcgagtacgagtagtagttagtggtactcgatgagacagagtgtgtcgctgtcacagcattttgctcatgatgttgttgttgctgc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0875000, RefSeq:Os01g0875000