Os01g0878300

From RiceWiki
Revision as of 19:03, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0878300

Description

Protein kinase-like domain containing protein

Version

NM_001051514.1 GI:115441398 GeneID:4325091

Length

5860 bp

Definition

Oryza sativa Japonica Group Os01g0878300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:39867959..39873818

Sequence Coding Region

39869696..39872237,39873151..39873503

Expression

GEO Profiles:Os01g0878300

Genome Context

<gbrowseImage1> name=NC_008394:39867959..39873818 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:39867959..39873818 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgttgcctcagcaacttcagatatatttgtgcttcatccttctgtctctgaagttcggaatatctgcatctctacctcttgaaacagatgctctcttggacataaagagtcatctggaggatccacaaaattacctaggcaattgggatgagtctcattcaccatgccaattttatggcgttacatgtgaccaaacttctggtggtgtcattggaatatcactctccaacgcctcactatcaggaactatatcgtcgtcgttttctcttctttcccaactacgtacgctggagcttggtgcaaactccatctcaggcactattcctgctgcactagctaactgcacaaatctgcaggttcttaacctgtcaacaaacagtttgacagggcaattacctgatctttcaacatttatcaatctacaagttcttgacctgtcaacaaacaatttttctggaccattcccagcatgggttggcaaattatcaggcctaactgaactaggtctaggagagaacaacttcaatgaaggtgatgttcctgaaagtattggaaagctgaagaacctgacatggctattcttggggcaatgcaaccttagaggagaattaccagtttcaatatttgatctggtctcacttgggaccctagacttctcacgcaatcagattattggtgtgtttccaatagcaatatccaacctgcgtaacctatggaagatcgagctctatcaaaacaatctgactggtgaaattcctcctgaacttgcacatttgacattgttatctgaatttgatgtgtcccagaatcagctaagtggtattctgcccaaagagatagcaaacctgaagaagctgaagatctttcatatttaccgaaacaacttctctggtgtgcttcctgaaggattaggggacttggagtttcttgagtcattttcaacctatgaaaatcaattctcaggaaagttccctgcaaaccttggccgattctcaccactcaatgcaattgacatatctgagaattatttttctggtgaatttccaaggttcctgtgccaaaacaacaaattgcagttcttgttggctttggacaacaacttctcaggtgaattccccagctcctactcttcttgcaaaacacttcagaggtttagaataagtcaaaatcagttcactgggagaattcacagtggcatatggggattgcctaatgctgtgatcatcgatgttgccaacaataaatttgttggcggcatatcctctgatataggcatttcggcttctctgaaccaactgtatgttcataataacgtcttctctggtgaacttccaatggagttggggaagctttccctgcttcagaagcttgttgctttcaacaatagattctctggccaaatccctgcacagattggaagtttgaagcagctgtcattcctgcacctggaacaaaatgctctggaaggatcgataccacctgatattggtatgtgcaacagcctagttgatctgaaccttgcagacaattctttgactggcaccattccagacacactagcatctctattcactctgaattcactcaacctatctcacaacatgatctctggtgaaatccctgaaggattgcaatatctgaagcttagttatgttgatttctcccacaacaatttatctggaccagtccctccagctctcctgatgatagctggagatgatgcattctctgaaaacgacggcctttgtattgctggagtttcagaaggttggaggcaaaatgccaccaatttaagatactgcccgtggaacgacaaccatcagaacttctcgcagagaaggctatttgtcgtgctgataatagtgacatctctggtggttctcctatctgggttggcatgcctgagatatgaaaattacaagcttgagcagttccacagcaagggagacatcgagagcggcgacgacagtgactcaaagtgggttcttgagtccttccacccccctgagcttgatcctgaggagatttgcaacttggatgtggacaatctgattggctgtggaggcactggcaaagtttataggcttgaattgagcaaagggaggggtgttgtggccgtgaagcaactatggaagcgtgatgatgcaaaggtcatgagaactgagatcaacacacttgggaaaatacgccaccggaacatcctgaaactccatgcattcttgaccggtggggaatcaaactttctggtgtatgagtatgtggtaaatggcaatctctacgatgcaatccgccgtgagttcaaggctgggcagccggagctggactgggagaagcggtaccggattgcggttggaaccgcaaagggcatcatgtatcttcaccatgattgctccccggccataatccaccgtgacataaaatccaccaatatactgctggatgaggagtatgaagcgaagcttgcggatttcggcatcgccaaattggtggaaggttcaccactcagctgcttcgctggtacccatggctacatggctcctgagcttgcttattctctcaaggtgacagagaagagtgatgtttacagctttggcattgtgctgttagagctgcttactggacgcagcccttcagaccaacagtttgacggtgaactggacattgtctcctgggtttcatcccatttggccaaccagaatcctgcagctgttcttgatccaaaggttagcagccatgcatcagaggacatgacaaaggtcttgaacattgccatcctttgcactgttcaactgccttctgaacggccaaccatgagagaagtcgtgaaaatgctcatcgacatcgactctatctcagcaaacgggaaggcaaagaacaagaatgataagaagtaa</cdnaseq>

Protein Sequence

<aaseq>MLPQQLQIYLCFILLSLKFGISASLPLETDALLDIKSHLEDPQN YLGNWDESHSPCQFYGVTCDQTSGGVIGISLSNASLSGTISSSFSLLSQLRTLELGAN SISGTIPAALANCTNLQVLNLSTNSLTGQLPDLSTFINLQVLDLSTNNFSGPFPAWVG KLSGLTELGLGENNFNEGDVPESIGKLKNLTWLFLGQCNLRGELPVSIFDLVSLGTLD FSRNQIIGVFPIAISNLRNLWKIELYQNNLTGEIPPELAHLTLLSEFDVSQNQLSGIL PKEIANLKKLKIFHIYRNNFSGVLPEGLGDLEFLESFSTYENQFSGKFPANLGRFSPL NAIDISENYFSGEFPRFLCQNNKLQFLLALDNNFSGEFPSSYSSCKTLQRFRISQNQF TGRIHSGIWGLPNAVIIDVANNKFVGGISSDIGISASLNQLYVHNNVFSGELPMELGK LSLLQKLVAFNNRFSGQIPAQIGSLKQLSFLHLEQNALEGSIPPDIGMCNSLVDLNLA DNSLTGTIPDTLASLFTLNSLNLSHNMISGEIPEGLQYLKLSYVDFSHNNLSGPVPPA LLMIAGDDAFSENDGLCIAGVSEGWRQNATNLRYCPWNDNHQNFSQRRLFVVLIIVTS LVVLLSGLACLRYENYKLEQFHSKGDIESGDDSDSKWVLESFHPPELDPEEICNLDVD NLIGCGGTGKVYRLELSKGRGVVAVKQLWKRDDAKVMRTEINTLGKIRHRNILKLHAF LTGGESNFLVYEYVVNGNLYDAIRREFKAGQPELDWEKRYRIAVGTAKGIMYLHHDCS PAIIHRDIKSTNILLDEEYEAKLADFGIAKLVEGSPLSCFAGTHGYMAPELAYSLKVT EKSDVYSFGIVLLELLTGRSPSDQQFDGELDIVSWVSSHLANQNPAAVLDPKVSSHAS EDMTKVLNIAILCTVQLPSERPTMREVVKMLIDIDSISANGKAKNKNDKK</aaseq>

Gene Sequence

<dnaseqindica>1738..4279#5193..5545#ctcctgtgtgctagcggaggcggagcactacacggttaattctgcggttgctgctgctacctgcgaccttctagcaggtgcgtttcctcctcgctttgcctatatatatatccacttacatttctcggcttgatccatggattagtctgtcgatctcttccatgccatcgatctcgctggttaagattgcgctctagtgcttagcttgttgcagagccttgactttctttctctgctaagaactgaataacttgactctgagtaagagcttgcatatatagctcttagtatattcttcagattttgtcattgatgttatgcgacttgtgcatttctttgactgatatcatgtagtaatcactaaacttcatgcctgactctaggttgtgagttgtgagacagcgagagttagtcggtgtagtttcatcaggaagggccgcttagacagtgagaactgagaactgagaaatacagcagtaggaaataaatacccgttctactctggtgtcagtcctagatataatttaccactgtgtttcatgcatgatccgattcttagttttctcgacaagaggtggtaaccacatgtaaatattgttgtttagcatagctcttgtgatcaaagaggatggaaaattcctggtagggtcagtaagggaaggaatcagcattgcgttcccattgttcatatatctgacaaatgataatgatgtcttggtgtccattgctactggacaaaatagtacaggttagctgagtcagaagggttcatgcagaaagtgtagaacttattgcagataaaaccctttgcaaatcatgtacagcagtagagcttcatactgtcaccggcttactgcgcagtccccaacgtttgatcatgtggtccataaggatcaatcgttcaaactgcatcagaattcagaacctaagcatgaagaaatactacctcgatctaccactagacagccatatatgacattgacaacggcaataaggaccgttgctttagaccaaaatagaatcagcagtgcatccacttcctggatgggttaaatgctgatacgaagtatgaacagacataacctaatcttaattaactgacaggctgaaaaaggtatcgggtatattcaatgaatctggtaaaatatctggctgatttattgcgttagtatcaagtgattagtactatgagatttggtattgctactcaagattctttgtttcttttttcatgaaagaggtcttgagaaaattcgtagtgtaagcatttgttttgctgaagagaacaaccaaaaccataagcccaggcaaaagtgtgttcatttaactcagtaaactagtctttcctgatccgaagtttggagcaaactttaatttttctaatacacttttgttttaaagagagaacaaaaaagctgatatttgctaaaggaacaagtatctaattactcttttattacttggtccccatgattattcagtaactggctttcagtataatgatacaacttttggtcttttcacacttcactttccttcaatcctattcaactatcactgcactgggagctaactacacatagacatagctttcattctttttctgaagtttaaataatgtttacttttctgaaaatttcaacgtattgatatcatcatcaaatccagtatgacatgccccaaactaacgtaagattcatacttttcaggtacacagtgctaacaagtaacaacacaatgttgcctcagcaacttcagatatatttgtgcttcatccttctgtctctgaagttcggaatatctgcatctctacctcttgaaacagatgctctcttggacataaagagtcatctggaggatccacaaaattacctaggcaattgggatgagtctcattcaccatgccaattttatggcgttacatgtgaccaaacttctggtggtgtcattggaatatcactctccaacgcctcactatcaggaactatatcgtcgtcgttttctcttctttcccaactacgtacgctggagcttggtgcaaactccatctcaggcactattcctgctgcactagctaactgcacaaatctgcaggttcttaacctgtcaacaaacagtttgacagggcaattacctgatctttcaacatttatcaatctacaagttcttgacctgtcaacaaacaatttttctggaccattcccagcatgggttggcaaattatcaggcctaactgaactaggtctaggagagaacaacttcaatgaaggtgatgttcctgaaagtattggaaagctgaagaacctgacatggctattcttggggcaatgcaaccttagaggagaattaccagtttcaatatttgatctggtctcacttgggaccctagacttctcacgcaatcagattattggtgtgtttccaatagcaatatccaacctgcgtaacctatggaagatcgagctctatcaaaacaatctgactggtgaaattcctcctgaacttgcacatttgacattgttatctgaatttgatgtgtcccagaatcagctaagtggtattctgcccaaagagatagcaaacctgaagaagctgaagatctttcatatttaccgaaacaacttctctggtgtgcttcctgaaggattaggggacttggagtttcttgagtcattttcaacctatgaaaatcaattctcaggaaagttccctgcaaaccttggccgattctcaccactcaatgcaattgacatatctgagaattatttttctggtgaatttccaaggttcctgtgccaaaacaacaaattgcagttcttgttggctttggacaacaacttctcaggtgaattccccagctcctactcttcttgcaaaacacttcagaggtttagaataagtcaaaatcagttcactgggagaattcacagtggcatatggggattgcctaatgctgtgatcatcgatgttgccaacaataaatttgttggcggcatatcctctgatataggcatttcggcttctctgaaccaactgtatgttcataataacgtcttctctggtgaacttccaatggagttggggaagctttccctgcttcagaagcttgttgctttcaacaatagattctctggccaaatccctgcacagattggaagtttgaagcagctgtcattcctgcacctggaacaaaatgctctggaaggatcgataccacctgatattggtatgtgcaacagcctagttgatctgaaccttgcagacaattctttgactggcaccattccagacacactagcatctctattcactctgaattcactcaacctatctcacaacatgatctctggtgaaatccctgaaggattgcaatatctgaagcttagttatgttgatttctcccacaacaatttatctggaccagtccctccagctctcctgatgatagctggagatgatgcattctctgaaaacgacggcctttgtattgctggagtttcagaaggttggaggcaaaatgccaccaatttaagatactgcccgtggaacgacaaccatcagaacttctcgcagagaaggctatttgtcgtgctgataatagtgacatctctggtggttctcctatctgggttggcatgcctgagatatgaaaattacaagcttgagcagttccacagcaagggagacatcgagagcggcgacgacagtgactcaaagtgggttcttgagtccttccacccccctgagcttgatcctgaggagatttgcaacttggatgtggacaatctgattggctgtggaggcactggcaaagtttataggcttgaattgagcaaagggaggggtgttgtggccgtgaagcaactatggaagcgtgatgatgcaaaggtcatgagaactgagatcaacacacttgggaaaatacgccaccggaacatcctgaaactccatgcattcttgaccggtggggaatcaaactttctggtgtatgagtatgtggtaaatggcaatctctacgatgcaatccgccgtgagttcaaggctgggcagccggagctggactgggagaagcggtaccggattgcggttggaaccgcaaagggcatcatgtatcttcaccatgattgctccccggccataatccaccgtgacataaaatccaccaatatactgctggatgaggagtatgaagcgaagcttgcggatttcggcatcgccaaattggtggaaggttcaccactcagctgcttcgctggtacccatggctacatggctcctggtaagatatgaacaattctgctcttgtatgttaaatgtttatggtagtagttagtattgcacatgaattccttaggaaaaaaaacaaaatgcgtaatacctcttcttccagcccttacccattcctctcaaccatctcgcggatgaattcgccatgccgctgctctcttgctcggccgccgccgccgcggcgccaccttgcgagcaggtcgaccgccgtcggcggctgtgacgcgcatcggccactccacccccttcttccccgacaggcgcccccccccttctaccaccgccgcggtgctcgagctcccacctccctcccattccctccccgcctgccgccagcaacctccccttcaaccaccgcccgccgcggccgtcgtagtcgaccgctactggccgcgccatccgccgccgccatcctccagtgcctccgatgcggacgaatttcttggcgattagccgattacatgcggtgaatgagtgggagtcccaccgggaatggtcaggctcatatgaagatggtatctttagaaataactgaaaataatttattaataaacgtttaactatatttttcatggttttaaaccgatgctgaaaaatatactactgcaacgataaacaaaaacactgaaatcaaacttaaaattaagtttcagaattcaatttttggttgggctaataaactaacaagcaacgagggtagaattgctactaggtattctggaaaaaaagagagagaaagaattgctactagtcatggacaatgttattaaaaaaaatattcatacatttttatatgaaagcaaatggcatccatcataattcttcaaaaggtgtaattctgacatgcatattatgcgtagttctgtagatttgacaatctaacatcagctcgtctcaaaatgcagagcttgcttattctctcaaggtgacagagaagagtgatgtttacagctttggcattgtgctgttagagctgcttactggacgcagcccttcagaccaacagtttgacggtgaactggacattgtctcctgggtttcatcccatttggccaaccagaatcctgcagctgttcttgatccaaaggttagcagccatgcatcagaggacatgacaaaggtcttgaacattgccatcctttgcactgttcaactgccttctgaacggccaaccatgagagaagtcgtgaaaatgctcatcgacatcgactctatctcagcaaacgggaaggcaaagaacaagaatgataagaagtaagaacagatgccccgtttctttgtaagaaactgctgccagaaagatcaaaaggcacccagtagcaacagtctgggtgctgccgtgctgccaattaggaccttaattagaatgcctgactagtgaatagtaactagtaggctggtaataaactgaggttttagcagcctctgaaaagcttgcacatatgtacaagctaccctgtacaaatttcagtcatgtactctgaagtttctgtaaaaatgatatgcgaagaattatgatgtaccagtaccacactgcaatgccagtagaatatgaccataccgttaaaaatgg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0878300, RefSeq:Os01g0878300