Os01g0914700

From RiceWiki
Revision as of 19:04, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0914700

Description

Peptidase A22B, minor histocompatibility antigen H13 family protein

Version

NM_001051717.1 GI:115441804 GeneID:4324348

Length

3448 bp

Definition

Oryza sativa Japonica Group Os01g0914700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:41608448..41611895

Sequence Coding Region

41608586..41608762,41608848..41609118,41609360..41609479,41609580..41609704,41609900..41610082
,41610198..41610232,41610344..41610500,41610584..41610637,41610731..41610823
,41610904..41611043,41611194..41611264,41611347..41611427,41611509..41611573

Expression

GEO Profiles:Os01g0914700

Genome Context

<gbrowseImage1> name=NC_008394:41608448..41611895 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:41608448..41611895 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgttccctgcaccctcctcctcctcccctcgccgccgcggccgcggcctcgcctacctcctcgtctccgtcctcctgctcgcgtcccgcgtgccgggcgccgccggcgcggactcggagttcgaggacggcgtctcgcccaagttccccggctgcgacaaccccttccagaaggtgaaggtgacgtactgggtggacggcgacgagaggagcagcctgaccgggatcacggcgaggttcggcgaggtgctgccggccaccggctccgacggcgacaagcggaaggccgtggtccccgccccgaagaccggctgcgccaagtcatccgcgccgcttgctagctccattgccgtggcggagcgcggggagtgcacgttcctggagaaggccaagacggcggagtccggcggcgccgccgcgctgctcctcatcaacgacgaggacgatttgcagaagatggtgtgcacccagaacgacacggtccctaacattggcatcccggtcgtgatggtatcccagtctgccggtcgcaagatcctctccggcatggacggtggggcaaaggttgacattctgatgtatgcgccggagaagccgagtttcgatggcgctatacctttcctctggctgatggccgtcggcagcgtggcctgtgcgtccgtttggtccttcgtcgtcgtcggcgacgaggataagaatgctcctacactgggtggagaagaagctgctgactctgaaatcgtggagctgcagaccaaaaccgcgctcgtgttcatcgtcaccgcgtcgcttgtcctgctgttcctgttcttcttcaaatccacctggtctgcatggctgctggttgtgctgttctgcctcagtggtctccagggattgcactatgttgcctcgactctaattgtaagaacttgtgatcggtgccgcgaagcaaaagtagctcttcctgtattagggaacgtgacagtggttacacttgtcatcctaccactagctttgatcttcgttgtcgtttgggctgtacaccagaattcaccgtttgcttgggttggtcaggatcttatgggcatctgcatgatgattcttgtattgcaagtggtccatctgccaaatatcaaagttgcaacagcgcttcttgtgagcgctttcatgtatgacattttttgggtgttcatatcacctttcatattcaagaaaagtgtcatgatcacagttgctcgtggtagcgatgagggacctagccttcccatggttctgaagatgccaaaggagtttgatacatggaatggctatgacatgatcggatttggggacattcttttcccaggactacttgttgctttcagtttcaggtatgacagagcaaatggaaaggacttgactgacggctatttcctctgcctaatgatcggttacgccttcggtttgtcatgcacatatgttggcctgtacctaatgaagagtggacagccagctctcctctacctagtcccatcaacactaggaactattgtcacgctaggtgcgaaaagaggagagctaagtcagctctggaatgctaaagtatag</cdnaseq>

Protein Sequence

<aaseq>MAFPAPSSSSPRRRGRGLAYLLVSVLLLASRVPGAAGADSEFED GVSPKFPGCDNPFQKVKVTYWVDGDERSSLTGITARFGEVLPATGSDGDKRKAVVPAP KTGCAKSSAPLASSIAVAERGECTFLEKAKTAESGGAAALLLINDEDDLQKMVCTQND TVPNIGIPVVMVSQSAGRKILSGMDGGAKVDILMYAPEKPSFDGAIPFLWLMAVGSVA CASVWSFVVVGDEDKNAPTLGGEEAADSEIVELQTKTALVFIVTASLVLLFLFFFKST WSAWLLVVLFCLSGLQGLHYVASTLIVRTCDRCREAKVALPVLGNVTVVTLVILPLAL IFVVVWAVHQNSPFAWVGQDLMGICMMILVLQVVHLPNIKVATALLVSAFMYDIFWVF ISPFIFKKSVMITVARGSDEGPSLPMVLKMPKEFDTWNGYDMIGFGDILFPGLLVAFS FRYDRANGKDLTDGYFLCLMIGYAFGLSCTYVGLYLMKSGQPALLYLVPSTLGTIVTL GAKRGELSQLWNAKV</aaseq>

Gene Sequence

<dnaseqindica>139..315#401..671#913..1032#1133..1257#1453..1635#1751..1785#1897..2053#2137..2190#2284..2376#2457..2596#2747..2817#2900..2980#3062..3126#gacgcatgcagcttccctcgtcggggaagacgacgtacgaccccgacgtactacgcgcccacgcacgcacgacgggacggccggcctcctcacctcgctcgctcgcgccgcgccgctcgccggcaaatccaccacgccatggcgttccctgcaccctcctcctcctcccctcgccgccgcggccgcggcctcgcctacctcctcgtctccgtcctcctgctcgcgtcccgcgtgccgggcgccgccggcgcggactcggagttcgaggacggcgtctcgcccaagttccccggctgcgacaaccccttccagaaggtaagtaaatcgccgcgtcgatctcgtcggagaggaaggagatgacgatcgatcgtacgtgacggtggcatgcgcgtgtgtgcaggtgaaggtgacgtactgggtggacggcgacgagaggagcagcctgaccgggatcacggcgaggttcggcgaggtgctgccggccaccggctccgacggcgacaagcggaaggccgtggtccccgccccgaagaccggctgcgccaagtcatccgcgccgcttgctagctccattgccgtggcggagcgcggggagtgcacgttcctggagaaggccaagacggcggagtccggcggcgccgccgcgctgctcctcatcaacgacgaggacggtcagtacgtgtagtttttaaccgaacgactgcatttccatcgtgcattgtgcataccatgaaagtaattaacattgagaaattttatggtacttaaaaaaaatcctgagatacctaaaaatttggtacttagagatatcagtgtctcaggatatcaaattttacactaaaaaatatggtatcctccaatatttttttaaatggtaaaattatccaattaacattagggttcttcgtgtagatttgcagaagatggtgtgcacccagaacgacacggtccctaacattggcatcccggtcgtgatggtatcccagtctgccggtcgcaagatcctctccggcatggacggtggggcaaagggtgagaggctgaaaaaaagaattagtctgtcgagaagctgaattcatttcttgctgctgtttttgtgaaccatatgcttctgattttgcttaatttgcagttgacattctgatgtatgcgccggagaagccgagtttcgatggcgctatacctttcctctggctgatggccgtcggcagcgtggcctgtgcgtccgtttggtccttcgtcgtcgtcggcgacgaggtatatcaatcaatccacaaaaaatacgtttcagaagtttaattttataaattacgagtattatacgttttttgcagaagaaaaagagtgagacaaaatgcatcgatcatgtcacatcacatgcatttttcactgaaacgaatggcgcgaatttaaaatatgactttgatatggcggcgatattatttggtccaggataagaatgctcctacactgggtggagaagaagctgctgactctgaaatcgtggagctgcagaccaaaaccgcgctcgtgttcatcgtcaccgcgtcgcttgtcctgctgttcctgttcttcttcaaatccacctggtctgcatggctgctggttgtgctgttctgcctcagtggtctccaggtgcatggcaattgcctactcaatctgacatagtttggttcagttaatcagtaaactaactaatactgtatagctttgtttcatatcttctcttgacggatcctttgtttttcagggattgcactatgttgcctcgactctaattgtaaggtgtgatcactgaaaccatgcaaccttttgtatcatcgcaccattgattctgaatttctgatagtgctattacttgcttgctggtctaactgctgcaaagttgattgacagaacttgtgatcggtgccgcgaagcaaaagtagctcttcctgtattagggaacgtgacagtggttacacttgtcatcctaccactagctttgatcttcgttgtcgtttgggctgtacaccagaattcaccgtttgcttgggttggtcaggatcttatggtatggtttgttgtgtgcaccaggtacagtgcaatgatgatttccttgtcatgtttgctcatggattgttccttttcattcagggcatctgcatgatgattcttgtattgcaagtggtccatctgccaaatatcaaagtgagatcatcaagaacatatgatgccttggtttagtaaatatggcaattgtaatcatcttttgtacactgatgtacttgagattattttcaggttgcaacagcgcttcttgtgagcgctttcatgtatgacattttttgggtgttcatatcacctttcatattcaagaaaagtgtcatgatcacagtaagtttgtttctgacaaagtgcaaataatgcaaatattagtgcaaaaatatcctaatccaattggtatgggcatacaggttgctcgtggtagcgatgagggacctagccttcccatggttctgaagatgccaaaggagtttgatacatggaatggctatgacatgatcggatttggggacattcttttcccaggactacttgttgctttcagtttcaggtcaaaaccaagattttgttctctgaatccgtcaatgcattcagttaatatcagagtctactggatacttctagtgatcaactgttcattctcctgaaaatttaccgttatttttcaagataatatttacctactgttcttgagttgcaggtatgacagagcaaatggaaaggacttgactgacggctatttcctctgcctaatgatcggttacgccttcggtacgtaatattatccgcatttctgaatcacagaagaacaaaatcattgacatcaattatcaacactgtcatctcaatgcaggtttgtcatgcacatatgttggcctgtacctaatgaagagtggacagccagctctcctctacctagtcccatcaacactaggtatcacatcgattcctctgctgagattttagtacagaaatcttgagctccaacacctgtttcttctctgaaattatgcaggaactattgtcacgctaggtgcgaaaagaggagagctaagtcagctctggaatgctaaagtatagcttgtgaaatattgatacttgcttgcagtcttgcagcattgtactagttagagaagcgatcattgatctgtatatgagaatatctgatggttgttggtaaatatatcatgccaaccatctgcacgaactttggttagatttcttttttcagtgtacacttaccatgaatggtggttattagtgcgaagcagtatgctctggctgtaaatgtcatggctgtgatgtaaatgtgaacagaattatattctctgtgtcttgatgtgttcttagctgggtgtaatataaaaaatccactttgtttcagaaacttcagatgttgctc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0914700, RefSeq:Os01g0914700