Os01g0958700

From RiceWiki
Revision as of 19:06, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0958700

Description

Membrane attack complex component/perforin/complement C9 family protein

Version

NM_001051990.1 GI:115442350 GeneID:4325391

Length

4539 bp

Definition

Oryza sativa Japonica Group Os01g0958700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:44055162..44059700

Sequence Coding Region

44055867..44056130,44056334..44056572,44056755..44056959,44057207..44057275,44057357..44057543
,44058248..44058414,44058838..44059533

Expression

GEO Profiles:Os01g0958700

Genome Context

<gbrowseImage1> name=NC_008394:44055162..44059700 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:44055162..44059700 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgcataaagcaaagctgcaaagtgtttcagaatctgcaatacggtccattggtcttggctacgacattgctaatgatatccgtctcaaaaactgcaagcagcgtggttcgcctgatccgctgctcattgagctcgaccatgacaaggttcaggatattgtgctccctggtaatctgacggttactggtgtgtctaagtcaatcaagtgcgataaaggggagcgtatgcggttccgctctgacgtcttatcatttcagcagatgtctgaacaattcaaccgggagctatcattgtctggaaaaattccatctggatttttcaatgcgatgtttgaatttactgggtgctggcagaaagatgcttctattaccaaatcacttgcttttgatggttggtgtatcacactatacactgttgcactctcaaaggcacatataatactaaaggatcatgttaagcaggctgttccatcaacatgggaacctgctgccttagcaaggtttattaaaaaatttgggactcatatagtcgttggtgtaaaaatgggaggaaaggatgtaatttatttaaagcaacagcactcgtcaagcttgcaagctgttgatgttcaaaaacgattgaaagagatgtcagaccagcgatttcttgatgcaaatgggcactctgacattagtttggcagattcatacgctaaagataataaggttgaagcaagagagcaacgactgagatttgtggagtccaatccattaaattcttactcttctaatgaggagttggtaatgatgcctaagcgaagaggtggaagggataaagatatcatttctcatagcgagtggctgaatactgttcaggcagaacctgatgttatctcaatgtccttcatacctattacttcactgttgaatggagttcctggctgtggatttttgaaccatgcaattaatctgtaccttcggtataagccgcgagttgaggaattgcaccagtttttagagtttcagcttccaaggcagtgggcacctgtctacagtgacctccctctgggtcctcagaggaaaagacaaagcagtgcatctttaccagtaaatttaattggtccaaagctatacgtttgtaccaacatggttgatgtgggcaaaagacctgttacaggactccggttgtttcttgagggacagaagagcaacaaactagctatccatctccagcatctctgctctcttcctcagattattcagctcgaagacgacacttacaatccccaaactccagaagcagagatccgcaaatactacgaaccgattggttcatggaagcgtttctcccatgtctgcaccgcaccagttgattcagatgattcctccattgtcacaggggcacatctggaagtagtcagccatggtttcaagaaaatactcttccttcgccttcatttctccaaagtctgcaatgccacttctgtcaagaacccagagtgggatggatctccaaacctgggtcagaaatcaggcctcatctcaacacttatcagcacacatttctccacagcagctctaaagcccgcgcctcgccctgccgaagtgaacatcaattcggcggtgtaccctggtggcccgcctgttccagtgcagaccccaaagttgctcaggtttgtggatacaacggagatgttgcgtggaccgcaggacctgccaggttactgggtggtttcaggtgcaaagctgcatcttgagaggggcaagatatcgctgcgggtgaaatactcactcttgacagtaaattcgcccgacgatgagttttcacccgatgaagaattttag</cdnaseq>

Protein Sequence

<aaseq>MAHKAKLQSVSESAIRSIGLGYDIANDIRLKNCKQRGSPDPLLI ELDHDKVQDIVLPGNLTVTGVSKSIKCDKGERMRFRSDVLSFQQMSEQFNRELSLSGK IPSGFFNAMFEFTGCWQKDASITKSLAFDGWCITLYTVALSKAHIILKDHVKQAVPST WEPAALARFIKKFGTHIVVGVKMGGKDVIYLKQQHSSSLQAVDVQKRLKEMSDQRFLD ANGHSDISLADSYAKDNKVEAREQRLRFVESNPLNSYSSNEELVMMPKRRGGRDKDII SHSEWLNTVQAEPDVISMSFIPITSLLNGVPGCGFLNHAINLYLRYKPRVEELHQFLE FQLPRQWAPVYSDLPLGPQRKRQSSASLPVNLIGPKLYVCTNMVDVGKRPVTGLRLFL EGQKSNKLAIHLQHLCSLPQIIQLEDDTYNPQTPEAEIRKYYEPIGSWKRFSHVCTAP VDSDDSSIVTGAHLEVVSHGFKKILFLRLHFSKVCNATSVKNPEWDGSPNLGQKSGLI STLISTHFSTAALKPAPRPAEVNINSAVYPGGPPVPVQTPKLLRFVDTTEMLRGPQDL PGYWVVSGAKLHLERGKISLRVKYSLLTVNSPDDEFSPDEEF</aaseq>

Gene Sequence

<dnaseqindica>3571..3834#3129..3367#2742..2946#2426..2494#2158..2344#1287..1453#168..863#ggtacaacaaattatctcacttcattcaacaaattgtcattgtgtttgcaaactataatgtacacgagaaagacttcaagctgctagagcacttacaaatgctacgaaaatcctacaaccttgacctgagttctcacagttagctgcacataaaacagaatgatattctaaaattcttcatcgggtgaaaactcatcgtcgggcgaatttactgtcaagagtgagtatttcacccgcagcgatatcttgcccctctcaagatgcagctttgcacctgaaaccacccagtaacctggcaggtcctgcggtccacgcaacatctccgttgtatccacaaacctgagcaactttggggtctgcactggaacaggcgggccaccagggtacaccgccgaattgatgttcacttcggcagggcgaggcgcgggctttagagctgctgtggagaaatgtgtgctgataagtgttgagatgaggcctgatttctgacccaggtttggagatccatcccactctgggttcttgacagaagtggcattgcagactttggagaaatgaaggcgaaggaagagtattttcttgaaaccatggctgactacttccagatgtgcccctgtgacaatggaggaatcatctgaatcaactggtgcggtgcagacatgggagaaacgcttccatgaaccaatcggttcgtagtatttgcggatctctgcttctggagtttggggattgtaagtgtcgtcttcgagctgaataatctgaggaagagagcagagatgctggagatggatagctagtttgttgctcttctgtccctcaagaaacaaccggagtcctgtaacaggtcttttgcccacatcaacctgcaccaaatttcaaaaatatctcaaatggcaaaaacaaaaccataaacgaaaatgtagtcggagaagtattcttaataagaaagtataattgtcattgcaacagacgggcacactgctagttgttaaggctattggtatcattcgtttctagtcgagaatttcagtgttcatgttttttccctttgaactaccaggtattttaagtgaaaggcttaagcactacaaatcattttcacaaaaggacatgatttgacacatcagtggttttttctctgcaacatgcaagctgacttatggctactttcctatgggaataaacaacatgtttcatttatgtaactatgatacagagaatatgaataaaactaaagaaatgtcaacaaacactgttcaattacgtaataaaagaattccacataccatgttggtacaaacgtatagctttggaccaattaaatttactggtaaagatgcactgctttgtcttttcctctgaggacccagagggaggtcactgtagacaggtgcccactgccttggaagctgaaactctaaaaactggtgcaattcctcaactcgcggcttatctgcaccagaaaaaaaaaaggtatcacctaactgtttaacattgctttcaattctctggcccaatgccactgtttgctaactagaattcttatgtttgtgacaacgttatgatggtgacttttcctaaaggaaatcatatgatggtgacctataacctacaggcttgcaatccaaacattgcagaaaatttaggattacttcaataatttgcaaccacttatttttcttcttctgaacctccttagcagagaatgcctgttttttagttgtacactcgcacaaaacatgatcaataacacagccatacagttggaagctaatgatgtgccacaaactataccaggtgttatttgacacatagggaatgaagctagtgaacgaagatacaaagaagtacaacgttatagagctattcccccagaagaaccttctttacatagaatctctaaactaaacaacatgaagtatttttttccatggaagaagtcagctatctttctgtccttataaaacataattatttttcctaactctagatattaccataaattataaaaaaaggaataagcagctgaatgtacagaaaaaaaatagtaacacaatcacagaagtgcttcatgttaattgttaactaagaaaggggtaagcagatgaaatatgatggatgaatctgtactctagaagattatgaattcacacttacaccgaaggtacagattaattgcatggttcaaaaatccacagccaggaactccattcaacagtgaagtaataggtatgaaggacattgagataacatcaggttctgcctgaacagtattcagccactcgctatgagaaatgatatctttatcccttccacctcttcgcttaggcatcattaccaactcctgaggtgatcaaaacttataaataagatcataagactttatatgaacagagaaaaatggtatcaacacaatgacctatacctcattagaagagtaagaatttaatggattggactccacaaatctcagtcgttgctctcttgcttcaacctgcacagcatgtaaaaactttcaatgtaagtcttagaagagaaaaggttacaaaaaaaagtgaaggtgacccatcacccttatcaaaaggagacaatatatgtctgccagaaaacagtaagatttaaattacaattaacctacacatacagagatgagaataattacaggtgtgatagatcactagagatgctgtcagagtacaggaaaatataacgcaaagaatgtttagaggcttggtaaacaccttattatctttagcgtatgaatctgccaaactaatgtcagagtgcccatttgcatcaagaaatcgctggtctgacatctctttcaatcgtttttgaacatcaacagcttgcaagcttgacgagtgctgttgctttaaataaattacatcctttcctcccatttttacaccaacgactatatgagtcccaaattttttaataaacctgtaagagtatattgacaaatgagtcagataagatcagaacaattctgaaaaaaaaaatcaaaacatgaaaaagaaaagctaacaatatgactttcctgaaggataagaccactaattgtttatgttaattcaaatcaaccatgctttaggtatgaatgcagatacaaatatgtgtctaaccttgctaaggcagcaggttcccatgttgatggaacagcctgcttaacatgatcctttagtattatatgtgcctttgagagtgcaacagtgtatagtgtgatacaccaaccatcaaaagcaagtgatttggtaatagaagcatctttctgccagcacccagtaaattcaaacatcgcattgaaaaatccagatggaatttttccagacaatgatagctcccggttgaattgttcagacatctgcaaaatatttcataacttgagtaacttggggaaggttgcaagcgtgaatattacttcttacagatgtaatcctactcttctacttaaatccatgactaataagatcaagatagtaagagttcaccgtgactaataacaatacatttacatagcattgtaatacagcatacactagaacttaatgggcatagaaaacatacctgctgaaatgataagacgtcagagcggaaccgcatacgctcccctttatcgcacttgattgacttagacacaccagtaaccgtcagattaccagggagcacaatatcctgaaccttgtcatggtcgagctcaatgagcagcggatcaggcgaaccacgctgcttgcagtttttgagacggatatcattagcaatgtcgtagccaagaccaatggaccgtattgcagattctgaaacactttgcagctttgctttatgcgccatcttttatcatacaacgatcataaatcccaaaccttgctgatcaagagttgaaaagacagccaaaattttccctttttgccgatgagaacctgccgtagaatcaccaaacacacaatccttttgcagttgaaatggtcaaggatcaagtattccttcttccccaactgaatcaactagaaatggaagcgaaataccactacctaacaatctggagccgagtttatccaataattccaaagtaattttgccgaatctaagaggaaacaaggggaatctttgagttctcttgctactctcaaacccacatcaaaccaaaacaccagcggggacagctaatatcgagacactctgaactgaagtataaccaaatcataggcccgaccagatcaaattccctacagatctccacgattttctttgacaagctacgaattccaccaaaccgggtaaagaaattaaagaaacgagctcctaaattcaggaccagcagaagccgagcaaaggagaaaacaaaaaaaaattctcagaaatactcccacggcaggaagggccgatcaggtcacggattctcgcgcgcggcgagcggccggatcgcggcggaaaccgcgggggaattcggcgaacgcgagggagaaggggggaggagaggagtaggagacgtgtagtggcaggatgaggtaattttggctcctgactcttcctttt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0958700, RefSeq:Os01g0958700