Os02g0143100

From RiceWiki
Revision as of 19:08, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os02g0143100

Description

Similar to Sucrose-phosphatase (EC 3.1.3.24)

Version

NM_001052401.1 GI:115444172 GeneID:4328274

Length

5946 bp

Definition

Oryza sativa Japonica Group Os02g0143100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:2388398..2394343

Sequence Coding Region

2390261..2390320,2390416..2390715,2390829..2390930,2391085..2391279,2391377..2391664
,2391942..2392128,2393778..2393824,2393982..2394074

Expression

GEO Profiles:Os02g0143100

Genome Context

<gbrowseImage1> name=NC_008395:2388398..2394343 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:2388398..2394343 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggataagctcaatggttctgcgcgtctcatgattgtttcagatcttgaccatacaatggttgatcatcatgacgaggagaacctgtcattgcttagatttggtgccctgtgggagtctgtttactgccaggattctttacttgtattttcgactggaagatcacctaccctgtatatggaattgaggaaagagaaacctatgctaactccagacatcactatcatgtctgtgggcactgagataacatatggtgaggaaatggttcctgatgatggctgggtggaatatctgaataataagtgggacaggaatattgttgttgaggagacagcaaatgtttccgagctgaaacttcaggtagagtcggaacagcgtccacataaggtcagcttctatgttgacaaaaagagtgctcaggaagtgataaagtctctctctgagaagttggagaaacgtgggctagatgttaaaataatctatagcggtggccaggaccttgatgtattacctcaaggtgctggaaagggtcaggcacttgcatatttgctcaagaagttaagctcatgtggaaaaccacccaataatactcttgcttgcggtgactctggcaacgatgcagaattattcagcatccctggtgtacatggtgtcatggtcagcaatgcccaagaggaactacttcagtggtattcagaaaatgcgaaggataatcctaagataattcatgcaactgagaggtgtgctgctggaatcatacaagccattggacacttcaaactaggacctaatgtttctccccgagacgtggatttcccttatgtcaaggagaacccggtaaagcctacggatgctgttgtaaagttttatgttctctacgagaagtggcgtagggctgaggttccaaagtctgattcggttacacagtatttcaaaaatataactcatgcaaatggagttattattcatcctgctgggcttgagtgttctcttcatgcatcaattgatgcattggggtcatgttacggtgacaaacaagggaagaaatacagagcatgggtggacagactggttgtctcacaatgtggttcagagggttggctggtgagatttaacttgtgggagttggaaggtgatgtgtggtcgtgttgtctgacaagtcttgcactgaatgcgaagcctgaaacccccgagggcttcgtggtaacacacatccacaaaacatggctcaaagggtactcatcagcggatgagcaatcgtccaagctttag</cdnaseq>

Protein Sequence

<aaseq>MDKLNGSARLMIVSDLDHTMVDHHDEENLSLLRFGALWESVYCQ DSLLVFSTGRSPTLYMELRKEKPMLTPDITIMSVGTEITYGEEMVPDDGWVEYLNNKW DRNIVVEETANVSELKLQVESEQRPHKVSFYVDKKSAQEVIKSLSEKLEKRGLDVKII YSGGQDLDVLPQGAGKGQALAYLLKKLSSCGKPPNNTLACGDSGNDAELFSIPGVHGV MVSNAQEELLQWYSENAKDNPKIIHATERCAAGIIQAIGHFKLGPNVSPRDVDFPYVK ENPVKPTDAVVKFYVLYEKWRRAEVPKSDSVTQYFKNITHANGVIIHPAGLECSLHAS IDALGSCYGDKQGKKYRAWVDRLVVSQCGSEGWLVRFNLWELEGDVWSCCLTSLALNA KPETPEGFVVTHIHKTWLKGYSSADEQSSKL</aaseq>

Gene Sequence

<dnaseqindica>1864..1923#2019..2318#2432..2533#2688..2882#2980..3267#3545..3731#5381..5427#5585..5677#aatcgccaccgcacacacctctccctctccctcctcccccgcgcgccccgcggcctccgccacccgcgccctcgccgtcgccgccccgtcccgtgcctcctgctccctccgccgccgcgcgcgcggcgcgtcgcaggtgtgatctccccgcccctccgatccctcctcctcctccgtctactccagatcgatcggtctcttcttcgtcctgcgggaggcggcggctttctcgcggtcgatttctgatccgcacgcgggttctgatttagcggggtggtgtgcatttctttcgatcggcggtgccgtgcattttgtttgggatttgggaattgtgtggcgattattgcgtgtgatttcgtatgaattactgtgttattcctactgtttcgcccaagacaaaaataatagggttaattggatccatgccattataaattttatgattttgaaatatgccactactatttacctatttaaagtcataccattacaatttagtagatatttgagaaataccactgcatacctcttagatgcatagaaatttatttttggaccaaattgcccgtgctttcttcctccatccctttctctctcaactccttttcctcccattctctgcctgatttgatcatctgagttcccattacaagcatggtggagagacctagcgggcaacgtcgaagaagtcaagtgcagctgctagcacggtgccatcatgccgccgcccgccgccgtgtcacgtgagccacccaacaccgcccatatcaattttgagaaaacacgaagaaaaagagaacaaaaatgcacggatgaaagaacatgtctctacatttgcctactagtactatgtacaatcagtaaacgagcttcgagaacacatcagcggccggcaccggcgttgacgccaccgccgtatctcaaatatgtccaaggccgacagccgctgctggattcatgccgaccgggtcagctccgatccagagagagatgggaggaaagggagtagagagagaaggggatggaggaagaagatagggttaatttggtcaaaaacaaatttcagtgcatcatagggggtaagtaatggcacatctcaaatatgtattaaattgtaatgacatgactccaaatacacaaatagtagtggtatatttcaaaaccgtaaaaattataatgacatgaatccaattaacccaaaataataataatgttgagaatcatgtgctcctcgacacgcgtcgtcccgtgttcttgaaatcacagacaacatgggtcgggtctacctaacatcatagtattcctattcgtgggccacgtgtttttttttaccaaatcactgtgcttgtttcactatatgttctgtaaaaaatcgatgattggtaaatactccctccatcccaaaatgtttgacgccgttgacttttttaaaaatgtttgaccgttcgtcttattcaaaaaaattaagtaattattaattcttttcctatcatttgatttattgttaaatatactttcatgtatacatatagttttacacatttcataaaagtttttgaataagacgaacggtcaaacatgtttaaaaaagtcaacggcgtcaaacatttagggaaggagggagtaatagttggtatcaaagctgaccggaaatttgtggtgtggccacaaaatctgtaattccgtccaccgtggcattttcattggcccttttgctttctgactgaaatggttcaaactcctttgaggcactgatgcaacatctgaactgaacacagtgtatagtttttaagtgattttagtgctttacccaagattttaacacctttcccaatttggcaaccatctttgcaggctggtaaaatggataagctcaatggttctgcgcgtctcatgattgtttcagatcttgaccatacaatggtgtgtttctttcaactcataccttggatttgtccagcgctaatcatgacattttgtatatctcattaatgctcaatctttttgaacttttgcaggttgatcatcatgacgaggagaacctgtcattgcttagatttggtgccctgtgggagtctgtttactgccaggattctttacttgtattttcgactggaagatcacctaccctgtatatggaattgaggaaagagaaacctatgctaactccagacatcactatcatgtctgtgggcactgagataacatatggtgaggaaatggttcctgatgatggctgggtggaatatctgaataataagtgggacaggaatattgttgttgaggagacagcaaatgtttccgagctgaaacttcaggtatgttcaataacttgcatggttgctttcttttaatttataaccattttgataatttgatgactaattaataagcaacaacactttattgctgtacatttacatggatataggtagagtcggaacagcgtccacataaggtcagcttctatgttgacaaaaagagtgctcaggaagtgataaagtctctctctgagaagttggagaaacgtggggtgaggaagcatttgtcttgatgtggctcagctttgaataattttttctctaagaaacattcatattttgttttcagtgttggaccgtttcttaagaaacatccatccatgttttgatttcatgtatgattaactggtattgttttgttctcagctagatgttaaaataatctatagcggtggccaggaccttgatgtattacctcaaggtgctggaaagggtcaggcacttgcatatttgctcaagaagttaagctcatgtggaaaaccacccaataatactcttgcttgcggtgactctggcaacgatgcagaattattcagcatccctggtgtacatggtgtcatggtcagtatgcaataaattttgcatgaagtagcgaacaaagttcataacagattgaatgtgtgcttactgcaattacaaagttttttcaaatgtttaggtcagcaatgcccaagaggaactacttcagtggtattcagaaaatgcgaaggataatcctaagataattcatgcaactgagaggtgtgctgctggaatcatacaagccattggacacttcaaactaggacctaatgtttctccccgagacgtggatttcccttatgtcaaggagaacccggtaaagcctacggatgctgttgtaaagttttatgttctctacgagaagtggcgtagggctgaggttccaaagtctgattcggttacacagtatttcaaaaatataactgtaagtatgcagcttctcactctgattttgttctgtaaaaaataacttggtttacttttgtcaaaaatttcctgtcttacctgtttatatggcataatgctttagcttataaggctaaggagcaatatacctcctttggcatgcacatctatttcaaagtttctgagagcattctaatcttgagaaaatgttgtagtttcatctcaaaatgatcatggtaatgacttgttattatagtgactttacaaactaatatattttatttattgtgtgttagcatgcaaatggagttattattcatcctgctgggcttgagtgttctcttcatgcatcaattgatgcattggggtcatgttacggtgacaaacaagggaagaaatacagagcatgggtggacagactggttgtctcacaatgtggttcagagggttggctggtgagatttaacttgtgggagttggaaggtgagtccttagaattctgccaaataactgaattagcctgttatgctgttgtatgcacctttttcaaaataaattagtgttcattttcccagttttaacttgttctattactgtccccttaatagttttctattagatcatggccctcctggtctacagagttctaatttcaacagaaaaatgtgctgcatgatactggatatggtcccactgtactcatttcaatataaactattgaactctcctatcttttcgcttatccacttggtccagacatcccagtcgtctactatttcctgccactaatcctgatgaattgaagaggaatggagcgaatagccaagtgataaccaagaaccacattgatgatgttagaagtatataggcagtcgaattcgtagcaatatcaccatacaactgataagcagtaacatcagctttagtcctttcacaaaatggcttctggagtacattctgtaagtgttagcaaactttacatggcgaacaacaaaatctctgccagttgctctatattttgcaccaccatggagaattgtatggccaaaataatgtgacttggtcccaagatagaaagtgaagaacactgaacagagctgaagctgcatgattatgaaatccccaagggcgcttctgaaacctctttctagtccaatctccataatcattggcaaggccatcaaaagacctagctgcacaatagactgagatcccatagccacttaaagtgcatgattccctctcatccatgcttgcttcataattgcaaactcaagtccacttaatgctaagtcaagtcttccatacaagaaaacatacactatcatgacaaccatccatacaacattaagacaagaacatgagaaaatatgcatgacggctagctgtacattaacaaacaaggttcagatgttcattcaatgaagcgacacatgagttacattaacttgccttgttctctgcactagtgtttaatagagaacacagggcagttgaacagtggacatgtgattatttgcagttatggaagtttctgaaaatcctatttctctaattaatattcagtgcataaaggaaaggccagtctcatttggctgcataagttatcagcatacaaatgcaatatgtaagcagtaaattcggcatcacagaactagtgttaccagtaaatccaatacatggtttgcaacatatgtactgatgtgagaaagaaatgaatgcggaattaggctgcatatctggtcctttagtaaacaatcaactacttgtgctatcagcttatcagcacagcagtatctttccacataaaatttcaatgatttcacctgatatgtggtattggggttcaccgttctccaagcatttcaatgggatgagttcacattttctgcattataaattaatccgaacttaggcaacagcaaagttttgagcatcacaccaaagcatatccgatggtcaggaactcaggacaaccttggattaaaaaaaaacatagtcttttcttttagttgtgcgggccgcaataccttaactttttttttcttttgacatgttcccattatgttatataattagtttttggcatatatgatcctcaactaattgtataaataatgctgtaatgccaggtgatgtgtggtcgtgttgtctgacaagtcttgcactgaatgcgaaggtaagcatcatctatgttcagtccgaaacctatctatgcctcctatacatatgcatacatatcattaattcatttgacatttgtaccatgtaacgtgtttacataaactgaaaaggtgggctaactttgctttctgtttttggtttcatgatctcagcctgaaacccccgagggcttcgtggtaacacacatccacaaaacatggctcaaagggtactcatcagcggatgagcaatcgtccaagctttagaaccttttctgcacctccgtgtgcacatggaaggaatttactcgaggataaataatgaatcttctcttgagattacttccttttcttgtctatattgtcaattttgttcaaaatactatgctggaggattcccagagccccaaattaagtttgacacatccttgtttgatgtgtaagataaatcataaatgttactgtatatctcatgattatcatgagcgcataaagcaaaactacttcacttgaatatatgttactagtgttcttcc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0143100, RefSeq:Os02g0143100