Os02g0244600

From RiceWiki
Revision as of 19:12, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os02g0244600

Description

Ataxin-2, C-terminal domain containing protein

Version

NM_001052951.1 GI:115445272 GeneID:4328858

Length

4485 bp

Definition

Oryza sativa Japonica Group Os02g0244600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:8193660..8198144

Sequence Coding Region

8193822..8194262,8194908..8195018,8195105..8195149,8195966..8196038,8196115..8196227
,8196330..8196389,8197187..8197234,8197322..8197390,8197518..8197579
,8197671..8197728

Expression

GEO Profiles:Os02g0244600

Genome Context

<gbrowseImage1> name=NC_008395:8193660..8198144 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:8193660..8198144 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggtggccatcgaggcggcggcggcggcggcggcggcggagaggggcccgatccgggcggtggcggaggcggaggcggaggcggaggcgaaggtggtggatgtggaggggaaggaggaggaggaggaggcggccaaggtggaggaggaggaggaggaggagagggagtacaagagcgacatgaggaagctggaggagctcatgtccaagctgaacccgcgcgcgcaggagttcgtgccatcgtcgcgccgcgcgccgccggcggcggcggcgcaggcggcgggcgggctgtccgccgacgcgccggtgttcgtctccgccgccgagtacttcggcggggccggcgccggagccgggcagctgcaggtgggcggcggcggcgggagggactccagcagcgacggatccagcaacggcggcgggcagccgcagaatcgccggagaaggagtggattcaaccagggaaggaggaggacgggaggccggacacgacgcgccgatagggaggatagtgtgcggaggaccgtctatgtctctgacattgatcagcaagtgactgaacagaagcttgccgaagtgttttctaactgtggacaagtggtagattgccgtatctgtggtgatccacactcagtcttgcgttttgctttcattgaatttgctgatgatgccggtgcaagggccgcactaacactaggaggaaccatgcttggttactaccctgttagagttttgccttccaaaacagctattctgcctgtgaatcctaaatttcttcctcggacggaagatgaaaaagagatggtctcaaggactgtatattgtactaacatagataagaaggttacagaagaagatgtaaagattttctttcagcagctttgtgggaaggtttctcggctgaggctccttggtgattatgtgcactcgacgtgcattgcatttgttgagtttgctcaagcagaaagcgccattctagccctgaactatagtggaatggttcttggcacacttcctatcagggtgagcccttccaagacacccgtgcgtccgcggtcgcctcgcgtgatgtcaaactga</cdnaseq>

Protein Sequence

<aaseq>MVAIEAAAAAAAAERGPIRAVAEAEAEAEAKVVDVEGKEEEEEA AKVEEEEEEEREYKSDMRKLEELMSKLNPRAQEFVPSSRRAPPAAAAQAAGGLSADAP VFVSAAEYFGGAGAGAGQLQVGGGGGRDSSSDGSSNGGGQPQNRRRRSGFNQGRRRTG GRTRRADREDSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDCRICGDPHSVLRFAFI EFADDAGARAALTLGGTMLGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCT NIDKKVTEEDVKIFFQQLCGKVSRLRLLGDYVHSTCIAFVEFAQAESAILALNYSGMV LGTLPIRVSPSKTPVRPRSPRVMSN</aaseq>

Gene Sequence

<dnaseqindica>163..603#1249..1359#1446..1490#2307..2379#2456..2568#2671..2730#3528..3575#3663..3731#3859..3920#4012..4069#ttcactgtttctccttcaccattcgcctcctcctcctctcgagggagagaagaaaaaagctaacgccgccgcaagaatccaagaaggagaagagagagaatttgatctcttcctctccttccccgaggctctgaggcgaggtaggttgtcgcgggatcaataatggtggccatcgaggcggcggcggcggcggcggcggcggagaggggcccgatccgggcggtggcggaggcggaggcggaggcggaggcgaaggtggtggatgtggaggggaaggaggaggaggaggaggcggccaaggtggaggaggaggaggaggaggagagggagtacaagagcgacatgaggaagctggaggagctcatgtccaagctgaacccgcgcgcgcaggagttcgtgccatcgtcgcgccgcgcgccgccggcggcggcggcgcaggcggcgggcgggctgtccgccgacgcgccggtgttcgtctccgccgccgagtacttcggcggggccggcgccggagccgggcagctgcaggtgggcggcggcggcgggagggactccagcagcgacggatccagcaacggcggcgggcagccgcagaatcgccgggtcggtgagctgaacgagattgttgttttggtcgcctctgcagctacgcggattgatttgaccggatatggtttgaccttttttgcattgagttcgtgatcgcgtgaggatttggtgatttacgcattgcgatcgcctagaatgacggggttttaggccacggtgatcatttttgttccttcttttgtttgtcttcttttgcaagattcttttctccttttgtcttgttttttttttcaaaaattttgtgttaaaatcgcagtctttgagcgtcaaataaaaaggatctttttgccagtcttgaaaaaagaacaaaaaattcaaggacataatcgatcggatcgtgttactttgatttcagatgtttgatcggtagtaatcaggaggctagggagtgtttaatgatctgttgtggttgtacactggttgatgaggatttgatttgtgtatttattttttgatgtgatatgagcactgtgcttgatgtctactaggattggtttttgtggacctacatttttcggctgttgattctcagaacaaacacaagtgtactgataattgtgtgcatattgaattattgattgattgactctggtggtgctatgctttcatgatcaattgaccctggcttggttgtaacagagaaggagtggattcaaccagggaaggaggaggacgggaggccggacacgacgcgccgatagggaggatagtgtgcggaggaccgtctatgtctctgacattgatcagcaagtgagcaatctaaagagagtggtgtatttgaagtgtgttgtttttgtatattttgctgtctgatcatctttttgtttcctctctaggtgactgaacagaagcttgccgaagtgttttctaactgtggacaagtaagttatgatattcttgaggagacatgttactttatgttactcccttgataatgtgatttcttatgctcgtaatggtgtgccttccattttcatgtgaaacataacggataaaattgttatctgccctcttggtttcagattttatggtttgcttggcacggtctttaaaataagttacttgactgcaaactgataaatagctgcctttaccgattggcattcctgtggcaaagtataagcttgtgctacaattgaattcctctgcaccatctgttttgagacgtgaattgatgcaaccacgaagataactgttattttgaattatgtgttttgtctctgtagtatttttggaaggtgaaattaaaacatttgatgattcagtagtaattactttttagtttggagtccctggttagcaccttcttttagagtgcaaagatgaatgtcgaatttcaacatatagaggttccctgtttgtataactaaatggaggcatagcagagtgctgacacatcatatttacaatgttcgcatgtgaaaggttaatctgctgtttgtcaatggttatttatctttatgactacaaaaatgatacatgtattactgcaagaatgttataacaccaactgaatcggagtcatctatgactatatgactaaaagaacaagtctttcaaaacaaattcatatcttttttggactataatgtatgttacttttttatctgttaatgatatcaggtaaacacctttctgtctatggatccaattgactattggatggataacttacactcatatttctttacctgtaggtggtagattgccgtatctgtggtgatccacactcagtcttgcgttttgctttcattgaatttgctgatgatggtaacaccttcacaactattgtttattttgtgtatagataaacagcaatcataaagttatcctttcttgtgtgcagccggtgcaagggccgcactaacactaggaggaaccatgcttggttactaccctgttagagttttgccttccaaaacagctattctgcctgtgaatcctaaatttcttcctcgggtatgataattattggatcacatagttcaagtctacctgtagagcttactaccggcatttccttttacacatcaacaacatgtaatgctcttttctgtacagacggaagatgaaaaagagatggtctcaaggactgtatattgtactaacatagataagaaggtacgtgagtttatatgcatgtcattttgataatccttaaggacccttaacatgttagatcttgaaatttagagtatagtgttacattgtgctgtgctgtacctgttcaacagaattttgatcttggtcgtttgtgtttaatccaatgaacattctaaatgatatatgcggttcaataaatcctacttaagcaacatcatctgcttaaatattctaaaatgagctgaggctgatatacatgtttctaacatgttgattcttgatattttctctgctgaaattctgcactagttttaatgactattatttcgcgccgttgttaacacatgaacattgcaagcaatggacccatgatttaatgcataacttttactcccacattgaattgaggtcttgtttgttatggaataatatagtatgtacttctgtactattttagatgccgttattctttactcatctgtcctttcccctaaagtctttatgtgtgcccagtgaatatattgattttgaagtgataccaagtgtcttcaagacagatacttaagtatgtagatattcagaaaagggtagtgtgatattttttttttctttcagtgcctaattgccagatttcatgataatatggggtctcaggctcatcacattgttttttagattatttttttcaaaaaagaactaatcatatgattttcttttccctgtggtacagtaatattgacctgcgactgagtttgtgtatgttctattctccaagagtcaagctgcttaacataattgtcttcctaactgtgcaggttacagaagaagatgtaaagattttctttcagcagctttgtgggaaggtgtgccacataagtacataaaacttgcttttctctttcctttagaccttctgctgaaactaacagtaccttgcactgttctgtcaggtttctcggctgaggctccttggtgattatgtgcactcgacgtgcattgcatttgttgagtttgctcaagtaagtagagcaaggtttctcagtgctataattttgtagtactatactcataaagtgcattccaacccatgacttggtaattgttcagtgtgtttgaaacgccgattcgaatgttattgttttgcaggcagaaagcgccattctagccctgaactatagtggaatggttcttggcacacttcctatcaggtaaagagtaaatccaatgttttgaagttgatgcaggagcatcatgaagaatcattatttgcttagccccatccattctccattgttgcagggtgagcccttccaagacacccgtgcgtccgcggtcgcctcgcgtgatgtcaaactgagtccgggttgttcctgaagcttgaggctgtcaccaatggcaggcagagcttgaaactctagtcatggcgtttagaaatgctgtcgcttcgcggaatcggtaactgccgtttctgagagtatcatctcatcatctcttaggtccaagtagaaggccgacctgctgatgttcgtctgttcagagacccatctgtaggttgggagaggctacattttcgtttcttttgttcagtatgctatgttcagtatcctataacagcctttgcaggcaattccgacaataatatctacgtattttctgtctcattcacactgttcatgtgaatatgtgatagttgaaattccatatctgacggtgaacttagggttttatttttcattactagtgaaattgaaatgattaatgtgaaaattcctc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0244600, RefSeq:Os02g0244600