Os06g0702600

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Revision as of 09:33, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0702600| Description = Similar to Auxin response factor 7a (Fragment)| Version = NM_001065027.2 GI:297606457 GeneID:4341978| Length = 7960 ...")
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Gene Name

Os06g0702600

Description

Similar to Auxin response factor 7a (Fragment)

Version

NM_001065027.2 GI:297606457 GeneID:4341978

Length

7960 bp

Definition

Oryza sativa Japonica Group Os06g0702600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:30534103..30542062

Sequence Coding Region

30534412..30534526,30535032..30535153,30536536..30536634,30536721..30536777,30536886..30537041
,30537123..30537207,30537478..30537568,30537710..30537874,30537967..30538089
,30538237..30538312,30538416..30538545,30538854..30539797,30540308..30540727
,30541242..30541432,30541600..30541801

Expression

GEO Profiles:Os06g0702600

Genome Context

<gbrowseImage1> name=NC_008399:30534103..30542062 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:30534103..30542062 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatgaagcaggcgcagcagcagccgccgccgccaccggcgagctctgcggcgacgacgaccaccgcgatggcagccgctgcggcggcggcggtggtggggagcgggtgcgaaggggagaagacgaaggcgccggcgatcaactcggagctgtggcacgcctgcgcggggccgctggtgtcgctgccgccggcgggcagcctcgtcgtctacttcccccagggccacagcgagcaggttgcagcctctatgcaaaaggatgttgatgcacatgttccaagctacccaaatctgccttcaaagttgatttgccttctgcataacgtcactttacatgcggacccagaaacagatgaagtgtatgcacaaatgactcttcagccagttacttcatatgggaaggaggccctgcagttatcagagcttgcactcaaacaagcgagaccacagacagaattcttttgcaagacactgactgcaagtgatacaagtactcatggaggcttctctgtgcctcgtcgagctgcagaaaagatatttcctccactggacttctcaatgcaaccacctgcacaagaactacaggccagggatttgcatgataatgtgtggacattccgtcacatatatcggggtcagccaaaaaggcatctgcttaccactggctggagtctatttgtaagcggcaagaggttatttgctggagattctgtcatttttgtcagggatgaaaagcagcaacttctattaggaatcaggcgtgctaaccgacagccaactaacatatcatcatctgtcctttcaagtgacagcatgcacatagggattcttgctgctgcagcccatgctgctgccaacaatagcccatttaccatcttttataaccctagggccagtcctactgaatttgttatcccatttgctaagtatcagaaggcagtctatggtaatcaaatatctttagggatgcgctttcgcatgatgtttgagactgaggaattaggaacacgaagatacatgggaacaataactggcataagtgatctagatccagtaagatggaaaaactcgcagtggcgcaacttacaggttggttgggatgaatccgcagccggtgaaaggcgaaatagggtttctatctgggagattgaaccggtcgctgctccatttttcatatgtcctccaccattttttggtgcgaagcggcccaggcaattagatgacgagtcctcggaaatggagaatctcttaaagagggctatgccttggcttggtgaggaaatatgcataaaggatcctcagactcagaacaccataatgcctgggctgagcttggttcagtggatgaacatgaacatgcaacagagctcctcatttgcgaatacagccatgcagtctgagtaccttcgatcattgagcaaccccaacatgcaaaatcttggtgccgccgatctctctaggcaattatgcctgcagaaccagcttcttcaacagaacaatatacagtttaatactcccaaactttctcagcaaatgcagccagtcaatgagttagcaaaggcaggcattccgttgaatcagcttggtgtgagcaccaaacctcaggaacagattcatgatgctagcaaccttcagaggcaacaaccttccatgaaccatatgcttcctttgagccaagctcaaaccaatcttggccaagctcaggtccttgtccaaaatcaaatgcaacagcaacatgcatcttcaactcaaggtcaacaaccagctaccagccagcccttgcttctgccccagcagcagcaacagcagcagcagcagcagcaacaacaacaacaacagcaacaacaacaaaaattgctacaacagcagcagcaacagcttttgctccagcaacagcagcaattgagtaagatgcctgcacagttgtcaagtctggcgaatcagcagtttcagctaactgatcaacagcttcagctgcaactgttacaaaaactacagcaacaacagcagtcattgctttcacaacctgcagtcacccttgcacaattacctctgatccaagaacagcagaagttacttctggatatgcaacagcagctgtcaaactcccaaacactttcccaacaacaaatgatgcctcaacaaagtaccaaggttccatcacagaatgatggacttctacatcaaaatttccctatgtccaacttcaaccagccacagatgttcaaagatgctcctcctgatgctgaaattcatgctgctaatacaagtaacaatgcattgtttggaatcaatggtgatggtccgctgggcttccctataggactaggaacagatgatttcctgtcgaatggaattgatgctgccaagtacgagaaccatatctcaacagaaattgataatagctacagaattccgaaggatgcccagcaagaaatatcatcctcaatggtttcacagtcatttggtgcatcagatatggcatttaattcaattgattccacgatcaacgatggtggctttttgaaccggagttcttggcctcctgccgctcccttaaagaggatgaggacattcaccaaggtatataagcgaggagctgtaggccggtccattgacatgagtcagttctctggatatgatgaattaaagcatgctctggcacggatgttcagtatagaggggcaacttgaggaacggcagagaattggttggaagctcgtttacaaggatcatgaagatgacatcctacttcttggcgacgacccatgggaggaatttgtcggttgcgtgaaatgcattaggatcctttcacctcaagaagttcagcagatgagcttggagggttgtgatctcgggaacaacattcccccgaatcaggcctgcagcagctcagacggagggaatgcatggagggctcgctgcgatcagaactccggtaacccttccaatggttcatatgaacaattcgaatga</cdnaseq>

Protein Sequence

<aaseq>MMKQAQQQPPPPPASSAATTTTAMAAAAAAAVVGSGCEGEKTKA PAINSELWHACAGPLVSLPPAGSLVVYFPQGHSEQVAASMQKDVDAHVPSYPNLPSKL ICLLHNVTLHADPETDEVYAQMTLQPVTSYGKEALQLSELALKQARPQTEFFCKTLTA SDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELQARDLHDNVWTFRHIYRGQPKRHL LTTGWSLFVSGKRLFAGDSVIFVRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGI LAAAAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYGNQISLGMRFRMMFETEEL GTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESAAGERRNRVSIWEIEPVAAPFFI CPPPFFGAKRPRQLDDESSEMENLLKRAMPWLGEEICIKDPQTQNTIMPGLSLVQWMN MNMQQSSSFANTAMQSEYLRSLSNPNMQNLGAADLSRQLCLQNQLLQQNNIQFNTPKL SQQMQPVNELAKAGIPLNQLGVSTKPQEQIHDASNLQRQQPSMNHMLPLSQAQTNLGQ AQVLVQNQMQQQHASSTQGQQPATSQPLLLPQQQQQQQQQQQQQQQQQQQQKLLQQQQ QQLLLQQQQQLSKMPAQLSSLANQQFQLTDQQLQLQLLQKLQQQQQSLLSQPAVTLAQ LPLIQEQQKLLLDMQQQLSNSQTLSQQQMMPQQSTKVPSQNDGLLHQNFPMSNFNQPQ MFKDAPPDAEIHAANTSNNALFGINGDGPLGFPIGLGTDDFLSNGIDAAKYENHISTE IDNSYRIPKDAQQEISSSMVSQSFGASDMAFNSIDSTINDGGFLNRSSWPPAAPLKRM RTFTKVYKRGAVGRSIDMSQFSGYDELKHALARMFSIEGQLEERQRIGWKLVYKDHED DILLLGDDPWEEFVGCVKCIRILSPQEVQQMSLEGCDLGNNIPPNQACSSSDGGNAWR ARCDQNSGNPSNGSYEQFE</aaseq>

Gene Sequence

<dnaseqindica>310..424#930..1051#2434..2532#2619..2675#2784..2939#3021..3105#3376..3466#3608..3772#3865..3987#4135..4210#4314..4443#4752..5695#6206..6625#7140..7330#7498..7699#cagcatcaccaccaccctactctctctctctagctagggttgcgctgcttcggtctcggtcttggcgccgcctgcctcgcccttcttgctcgcccctgctcccctgtccctctcgtgtcggggcgacggacggacatcctcacccgcgcgcacgtacgggtgatcgatcgattgattcctgctccgacgaagacggcggcggcgccggtgacctcgccggacatgcgcggggcccgctgaggtctttgttgccggcgaaaggggtggagtgattgactcggtcggtgtctgcctgtctggtctgaggtcatgatgaagcaggcgcagcagcagccgccgccgccaccggcgagctctgcggcgacgacgaccaccgcgatggcagccgctgcggcggcggcggtggtggggagcgggtgcgaaggtaggacgagttcttgctttgcttgctgcttccaatggcggttcgggatggagcagtggttgccttgccgtgttcttgtttctgcaatctggtccctgttttatcgcgttattatttcgccacaaaattaggcaaataaatcctttcttattcttcttggattttggattactgcatttttttttctctgcatttttgttcctgtgatttctggcgagcgtcgcagcatttactgttccacatttatgccccctcaaagtttgagtaatcgcaacataggagtacgagtagctgctactgcagtgctaagccatgtgcagagattaattggtttgtgtaaaaacctggtcgtttagggggcgaactgcaaattacacacaagctcgccggcggcgtagggcaaaatgcatttggtcatttggatcatccagcttacggcgagattattagggaaaaaagttttcactgttttgtttggttactgattggccgtggtgttttgcaggggagaagacgaaggcgccggcgatcaactcggagctgtggcacgcctgcgcggggccgctggtgtcgctgccgccggcgggcagcctcgtcgtctacttcccccagggccacagcgagcaggtgacttcgaagttctattgatttttttttcttctttgtttcattttcatagccatggatggcctcgttttgagaccctttttaattgactttttgttcttatgattctagtttttttttggtttgctttttttaaaaataagaattctaattcgtctcgttctgaatgttgatgattcttgcacgaataagttcacaacttgctgtccttttatgagttcttgagaggtggaatgcttttttttttgtttggtgttccattttgttcagtagtggtggcagttataattatatgatgggaataatgggatgtgtttctagggccaaaatgatatattttgttcacatctttatttctgggaatgtttcacttatcgcctaggagtatatgtctcctggaatcttttctgaattcatgtatcttctgttgccgaaaagtagtagtattatcttttcatgaattgttttttttggttctttgatattacagccatcattgatctatttggtaatttgattttctatgttttatacgatgtgggagatctcgattggtctgtttgttcattgtactttattttgtttcattagctaccaatttttagcttatggccaaagtggttggaagtattgggcatactggacccccttcttttatgggtttatggtgtgtggcaccattctcttgctctgtcgtttggtagatgaagcagccaagcagcttcgatttttttttcgcatttaatggtaattacattcagtagcttcttttgcaactttcttggctttggtgttggggctaccttattttgagcaagtttgaagtatggggtgatgaactgtttggatttggaaaagattctttatctaaaagctagtgctggaaggtgcctaattctgtattggtttttcctatcccttttgtgatgatgagaaaaagggaacttttttagtaaccgtgtgatggctatgtcctcatagcacatgccgatgtgaggcaagagaaagttttgctgtggcttaattaatataaaacgaatttatgctttaaacttaaattcagcctaatgttggtcatgcttttttgtgtggggaaattgctgtggttgaagtagggaacattttgtaaaagggagaagagttacatagagaatttaaaataaaacttaagcaacataaaaataatatttgtaaaaattcggttgccattttttcctgtgattttcatcgtgatcgagtaccctttggcctttgtttccctgtgactgatgattttttgttgataaggtcccagtatcaacagatttatatctgcatccttctgattccagtgtgaaaattgttgcttagagccacagatttaagtatctttcatattgcaggttgcagcctctatgcaaaaggatgttgatgcacatgttccaagctacccaaatctgccttcaaagttgatttgccttctgcataacgtcactttacatgtaatctacagacgtgagatgttattatagtttctttttacctttaaccatctatgctgaaagtatggtccatctatatttcttaggcggacccagaaacagatgaagtgtatgcacaaatgactcttcagccagttacttcagtaagcatctgatgcccttgcagatccccaacaaattttcatcgatttcccttttgttcatggattgtaacccaccttttgtgtttcaattgattgtgtattgaaaagtatgggaaggaggccctgcagttatcagagcttgcactcaaacaagcgagaccacagacagaattcttttgcaagacactgactgcaagtgatacaagtactcatggaggcttctctgtgcctcgtcgagctgcagaaaagatatttcctccactggtatgcaaagatcagagtcatatgccattgtttacttcattttctgcatctttattattaaatcactggtgcttgctgtaggacttctcaatgcaaccacctgcacaagaactacaggccagggatttgcatgataatgtgtggacattccgtcacatatatcggggtaagcaaacaatagcaacgataaaaataaagaaaatatatagtataacaaatgaaaaattctgctgttgacatcctactttatagttgttgatacttaatatttggcatgattggctgaaattgtgtgcatatgcatgttttgttctttacgcatggcagttcctgtattcaaacttcaaattattgtgtttttatgtaatatatgtggctcgatatgtattttgtccagacaaaatatttaatcgcccatgtgttttgatataaacaggtcagccaaaaaggcatctgcttaccactggctggagtctatttgtaagcggcaagaggttatttgctggagattctgtcatttttgtcaggtatgctacagcttatatgctatatctttaaagtttgaactaaatgatgagaacaagagatgcatgatgttttcttgttttttgtggttattcacatcgatttaacggtggtcttctttctttttcctttttattttttagggatgaaaagcagcaacttctattaggaatcaggcgtgctaaccgacagccaactaacatatcatcatctgtcctttcaagtgacagcatgcacatagggattcttgctgctgcagcccatgctgctgccaacaatagcccatttaccatcttttataaccctaggtcagttctgtactaaagtatgttttgataattctctagtagtaactactggagagctgttgaaatgatggtatgcaaattccgtatttcagggccagtcctactgaatttgttatcccatttgctaagtatcagaaggcagtctatggtaatcaaatatctttagggatgcgctttcgcatgatgtttgagactgaggaattaggaacacgaaggtacttttttctcacttttccataaatggaaataattgtggactgaattgccatattatatgattatacatgtcaatgacaaagctgggaatgattcttaattttctttttaaattttttgttgttgttttcttgcccttattgcagatacatgggaacaataactggcataagtgatctagatccagtaagatggaaaaactcgcagtggcgcaacttacaggtttgttctctggttaattttggcagcactataacctagtatttcttgtgcccattttctgctgctgatacaatatattttgtgttttttcattcttgaacaggttggttgggatgaatccgcagccggtgaaaggcgaaatagggtttctatctgggagattgaaccggtcgctgctccatttttcatatgtcctccaccattttttggtgcgaagcggcccaggcaattaggtgagctctcatgttacattgccattacttcttttatattctttaactgctcttgaatccagttattgatccaggagaataccccttagtcatttgttatgtctagctactagcttggaaaatatacctgcaaccaagctttacctttgagatgacaatctggataacataccttttgagttgtacgcacccaactgatttgagctaattatcgaattctagtggtgttgtgaattcaaatagatgaattgtttcactaaactgcttgtatgtatgcttaacttttgatccctaccatgtaattacagatgacgagtcctcggaaatggagaatctcttaaagagggctatgccttggcttggtgaggaaatatgcataaaggatcctcagactcagaacaccataatgcctgggctgagcttggttcagtggatgaacatgaacatgcaacagagctcctcatttgcgaatacagccatgcagtctgagtaccttcgatcattgagcaaccccaacatgcaaaatcttggtgccgccgatctctctaggcaattatgcctgcagaaccagcttcttcaacagaacaatatacagtttaatactcccaaactttctcagcaaatgcagccagtcaatgagttagcaaaggcaggcattccgttgaatcagcttggtgtgagcaccaaacctcaggaacagattcatgatgctagcaaccttcagaggcaacaaccttccatgaaccatatgcttcctttgagccaagctcaaaccaatcttggccaagctcaggtccttgtccaaaatcaaatgcaacagcaacatgcatcttcaactcaaggtcaacaaccagctaccagccagcccttgcttctgccccagcagcagcaacagcagcagcagcagcagcaacaacaacaacaacagcaacaacaacaaaaattgctacaacagcagcagcaacagcttttgctccagcaacagcagcaattgagtaagatgcctgcacagttgtcaagtctggcgaatcagcagtttcagctaactgatcaacagcttcagctgcaactgttacaaaaactacagcaacaacagcagtcattgctttcacaacctgcagtcacccttgcacaattacctctgatccaagaacagcagaagttacttctggatatgcaacagcagctgtcaaactcccaaacactttcccaacaacaaatgatgcctcaacaaagtaccaaggttccatcacagaacacaccattgccactgcctgtgcaacaagagccacaacagaagcttctacagaagcaagcgatgctagcagacacttcagaagctgccgttccgccgaccacatcagtcaatgtcatttcaacaactggaagccctttgatgacaactggtgctactcattctgtacttacagaagaaatcccttcttgttcaacatcaccatccacagctaatggcaatcaccttctacaaccaatacttggtaggaacaaacattgtagcatgatcaacacagaaaaggttcctcagtctgctgctcctatgtcagttccaagctcccttgaagctgtcacagcaaccccgagaatgatgaaggattcaccaaagttgaaccataatgttaaacaaagtgtagtggcttcaaaattagcaaatgctgggactggttctcaaaattatgtgaacaatccacctccaacggactatctggaaactgcttcttccgcaacttcagtgtggctttcccagaatgatggacttctacatcaaaatttccctatgtccaacttcaaccagccacagatgttcaaagatgctcctcctgatgctgaaattcatgctgctaatacaagtaacaatgcattgtttggaatcaatggtgatggtccgctgggcttccctataggactaggaacagatgatttcctgtcgaatggaattgatgctgccaagtacgagaaccatatctcaacagaaattgataatagctacagaattccgaaggatgcccagcaagaaatatcatcctcaatggtttcacagtcatttggtgcatcagatatggcatttaattcaattgattccacgatcaacgatggtggctttttgaaccggagttcttggcctcctgccgctcccttaaagaggatgaggacattcaccaaggtcagtacctttctgtttctttatctgaagccaaccaacagcttcttctgtggtcagcgtgaattttaattataagtaaacatgaagctttttatctttttcattaccatggtaacaataatttaaacttgcgatggtagtttcatctactggaaactaagttctcatttattaaccttcaaaacattgaagtaaatgtgcatatggataagccgaattgcatgataagtctgagtcagattctgttccgtgatgtgatgaggacagtatgagtagtttttttttttggttgcctaggagatgttaagaagttttatggttgagtttctagccgaacataacttttatgtgcgaatctcacatgtttgtattaattatactctttaagataagagttttctaagtgtaacttcaggataaatctgttaaacgaagcaccgtttctttgttgtattatagcattttatggatgcatttgcagttgcatctttgcataacctatatggtactgtaggtatataagcgaggagctgtaggccggtccattgacatgagtcagttctctggatatgatgaattaaagcatgctctggcacggatgttcagtatagaggggcaacttgaggaacggcagagaattggttggaagctcgtttacaaggatcatgaagatgacatcctacttcttggcgacgacccatgggagtaagttcagctctcattttcttctcatgcttgcataaaacactctcaagtttcgcttccagaatctgaatggatagatggccgcattccacccacaatcaacatcgcctatgtatcgggcattcatgttcttgcattcctaatgagtgctactgtggatcatacagggaatttgtcggttgcgtgaaatgcattaggatcctttcacctcaagaagttcagcagatgagcttggagggttgtgatctcgggaacaacattcccccgaatcaggcctgcagcagctcagacggagggaatgcatggagggctcgctgcgatcagaactccggtaacccttccaatggttcatatgaacaattcgaatgaccaaattcaccagtccatattgtcatgctgcgccggtgtaagtagacaatcaccggagtgttgttgtagatgttatcagcttacatccgggagcgcaaatggctcggcggatcagtagtgttttttttgtctatatgtgtagtttctcacacatcaaaagggagtagggatggtaaatgaaacttacctagagtttcttaaggttaggcgaaagatgattgtactgttggaaaggcagttctgtagtaaaatgattcttct</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0702600, RefSeq:Os06g0702600