Os09g0521400

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Revision as of 07:32, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0521400| Description = Similar to HMG-CoA synthase| Version = NM_001070241.1 GI:115480224 GeneID:4347614| Length = 3613 bp| Definition = O...")
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Gene Name

Os09g0521400

Description

Similar to HMG-CoA synthase

Version

NM_001070241.1 GI:115480224 GeneID:4347614

Length

3613 bp

Definition

Oryza sativa Japonica Group Os09g0521400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:21110171..21113783

Sequence Coding Region

21110250..21110318,21110720..21110826,21111040..21111172,21111298..21111441,21111550..21111708
,21111845..21111918,21112042..21112117,21112235..21112290,21112481..21112568
,21112643..21112783,21112872..21113021,21113300..21113533

Expression

GEO Profiles:Os09g0521400

Genome Context

<gbrowseImage1> name=NC_008402:21110171..21113783 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:21110171..21113783 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacggccgcaaggatgtcgggatcctcgccatggatatctacttcccgcccacctgcgtcctccaggaatcgctcgaggctcatgacggcgccagcaaagggaagtacaccattggtctcggccaagattgcatggccttctgcagtgaggtggaggatgtcatctcgatgagcatgacagttgtcacatccctgctgaaaaaatacaaggtcgatccaaagctgattggtcgattggaggttggcagtgagacagtcatagacaagagcaaatccatcaagacttggctgatgcagattttcgaggaatgcggtaatactgacattgaaggagttgattccagtaacgcgtgttatggtgggacagcagcgctgttgaattgtgtgaactgggttgagagtaactcctgggatggacgctatggccttgttgtttgcacggacagcgcggtttatgcggaaggcccagctcgtccgacaggtggtgctgctgctattgcaatgctcattggtcctaatgctcctattgcattcgagagcaaatacaaagcttctcacatggctcacgtctatgatttctataagcctgatcttgcaagtgaatatccggtcgttgatggaaaactatcccaaacatgctacttgatggcgctagactcatgctacagacagttttgtaagaagtatgaaaagctggcggggaaacaattctcaatttctgatgcagattactttgttttccattctccatacaacaagcttgtgcagaagagttttgctcggctttactataatgatttcacgcgcgactgcagctctgttgacaatgatgctaaagagaagctccagcctttctcaaatttgactggcgaggagagctaccaaagtcgtgacttggaaaaggcttcacaacaagtagcaaagcccttgtatgacatcaaagttcaaccatcaactttgcttccaaaacaaattggtaacatgtacacagcatctctttatgctgcgttggcgtctgtactctataacaagcatgctagtctggatgaccaacgaattgttatgttctcgtacggcagtggcttgacatccactatgttttcgttgaaacttaacaatggccaggaccccttcagtttatcaaacattgcttcagtgcttaatgccacggagaagcttgagtcaagacatatgaccttgcccgagaaatttgtggagacgctgaagctgatggagcaccgatacggcgcaaaagatttcgagacgtgcaaagacacgagcttgttgcctcctgggacgttctacctcaccagggttgactccatgtaccgaagattctatgagaggaaggccgacgaggagatcgctgcagccaaagccaagtacagtaatggacatgccaccaatggctatgccaatggccactag</cdnaseq>

Protein Sequence

<aaseq>MDGRKDVGILAMDIYFPPTCVLQESLEAHDGASKGKYTIGLGQD CMAFCSEVEDVISMSMTVVTSLLKKYKVDPKLIGRLEVGSETVIDKSKSIKTWLMQIF EECGNTDIEGVDSSNACYGGTAALLNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARP TGGAAAIAMLIGPNAPIAFESKYKASHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMA LDSCYRQFCKKYEKLAGKQFSISDADYFVFHSPYNKLVQKSFARLYYNDFTRDCSSVD NDAKEKLQPFSNLTGEESYQSRDLEKASQQVAKPLYDIKVQPSTLLPKQIGNMYTASL YAALASVLYNKHASLDDQRIVMFSYGSGLTSTMFSLKLNNGQDPFSLSNIASVLNATE KLESRHMTLPEKFVETLKLMEHRYGAKDFETCKDTSLLPPGTFYLTRVDSMYRRFYER KADEEIAAAKAKYSNGHATNGYANGH</aaseq>

Gene Sequence

<dnaseqindica>80..148#550..656#870..1002#1128..1271#1380..1538#1675..1748#1872..1947#2065..2120#2311..2398#2473..2613#2702..2851#3130..3363#tctccatctctcctctctgctctagcgtgggcggagaacacgaggcgtggccgcgtcgtcgtcggaggagggagcagagatggacggccgcaaggatgtcgggatcctcgccatggatatctacttcccgcccacctgcgtcctccaggtcactccctcgatctccctctctgctttcttccttctcctgatctcggcattttttttttggggtgggggggggggggtttacgtttcgttcttgtgctctgggttaatcacggaatcgtactgggaggtctcgctagatgcgttcggcgccccgcctggatgcgctgggttttgggttttggcgctggttgtgggcgacgccaatggtggtgaggtgcgcgaaagctgaatctcttgcggattgcgctgcggcgttgcaatgttggtgccaccacctgtgtgtgtgggggtggggatcaaatcgacagtgagaaatatatatgctgcccattcaggatggatggatggatggatggatggatgtttgaattttctcatgggcgggtggattggatgcaggaatcgctcgaggctcatgacggcgccagcaaagggaagtacaccattggtctcggccaagattgcatggccttctgcagtgaggtggaggatgtcatctcgatgaggtaattcaacggtttgactgctaatctgttgttactaatgtttacatatgtgatcaggaacactcttctacaatgccccattttttgtgttgtaagggagatgtgtacaattgtgtagctttcagtggtcaactctacgacacgcaatttcttctctcaaataaatacagtacagatcttttgtctgaatgctgaacaaaacgtgccttgcagcatgacagttgtcacatccctgctgaaaaaatacaaggtcgatccaaagctgattggtcgattggaggttggcagtgagacagtcatagacaagagcaaatccatcaagacttggctgatgcagattttcgaggtctgttaatcaaattgctatcaatttcctcctaaattgacaggccgtctggttcacttttgacctcacgagcctttctttactgagttgttagttttttgctaatctctgttcataaaatgcaggaatgcggtaatactgacattgaaggagttgattccagtaacgcgtgttatggtgggacagcagcgctgttgaattgtgtgaactgggttgagagtaactcctgggatggacgctatggccttgttgtttgcacggacagcgcggtctgtcacccatcattttccttgagcttgagctacctaagttgatcctttctgtctcaattggaacactgagctcactgactaccatcttgttattgaattgttcaggtttatgcggaaggcccagctcgtccgacaggtggtgctgctgctattgcaatgctcattggtcctaatgctcctattgcattcgagagcaaatacaaagcttctcacatggctcacgtctatgatttctataagcctgatcttgcaagtgaatatccggttagtttttgttcctctgtactattcctattatctggagagtttttttttcttgcgatgctatgtacctgctgtcctctcaaagtgtcacactttatagcaccatattatgttaataacagcagatgcattgtaggtcgttgatggaaaactatcccaaacatgctacttgatggcgctagactcatgctacagacagttttgtaagaagtgagcagctaaaactttgttactttctcccttaaaaaatgttactttctcttttgcatttgaacttttctgatttttcggtggatcaataattttctactgctattatacttcctaaactaggtatgaaaagctggcggggaaacaattctcaatttctgatgcagattactttgttttccattctccatacaacaaggtgtgaatatgaatatgaagattttcaaaacttaaattgctagggaacttcagtatttttgttgtttctgattttgtgacctggtgaactttgtttaactcccttgtttcttcacagcttgtgcagaagagttttgctcggctttactataatgatttcacgcgcgactgcaggtttgtaatatcttctcttccatttccccctttcgagaaaagctgagcttagctctcagatttgtctctctaacatggacagtatttagaattcaatcccggagggtttttcgatttgtggatgcaagttagtctcatttattttccatggtgaaatttccaaactaatttatttttaactggatactagctctgttgacaatgatgctaaagagaagctccagcctttctcaaatttgactggcgaggagagctaccaaagtcgtgacttggaaaaggtcattatcatcatattgtaatgttgttatgcgattaattcatgatctgataaaatattttgccaaatttttaggcttcacaacaagtagcaaagcccttgtatgacatcaaagttcaaccatcaactttgcttccaaaacaaattggtaacatgtacacagcatctctttatgctgcgttggcgtctgtactctataacaagcatgctagtctggtaaaccctatatctttagttccctcttatatagtctttcacctgtgtcattcttcaatctgatagttaattactgttgatgttacaggatgaccaacgaattgttatgttctcgtacggcagtggcttgacatccactatgttttcgttgaaacttaacaatggccaggaccccttcagtttatcaaacattgcttcagtgcttaatgccacggagaagcttgagtcaagacatatggtgagctttgtcatcccctccatccagtaccccgtcttctttcatcaatctgttactgcctcaaattgtcaccttccaagaaattcttctgttcataacgctacaatctgtaggatgtttgctgtatcacctaaacttttcagttgaagagccttattagatcagttcttccatctgatggagtgcaatcctacatactcattcactcattctgggcttatgctcatatattattaatgctgcattataacctatgttctccaacctcttgtgatcagaccttgcccgagaaatttgtggagacgctgaagctgatggagcaccgatacggcgcaaaagatttcgagacgtgcaaagacacgagcttgttgcctcctgggacgttctacctcaccagggttgactccatgtaccgaagattctatgagaggaaggccgacgaggagatcgctgcagccaaagccaagtacagtaatggacatgccaccaatggctatgccaatggccactagtggcacgcatggcatgatggctgctgctgatattgatttctggtttgataagttcatgattaggtgtttccagcctagtgtagtagtttctcaaataagtgttctccacacctgttatccatatctcctctaatttttttgtattgaatcagacagactagtgagacatttctgtagtatcaatcattcttgtttcttctagcttgtgtttctgctgtcacttgaagttattactatggactagtttagc</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0521400, RefSeq:Os09g0521400