Os06g0728600

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Revision as of 09:36, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0728600| Description = EPS15 homology (EH) domain containing protein| Version = NM_001065179.1 GI:115470089 GeneID:4342134| Length = 7469 b...")
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Gene Name

Os06g0728600

Description

EPS15 homology (EH) domain containing protein

Version

NM_001065179.1 GI:115470089 GeneID:4342134

Length

7469 bp

Definition

Oryza sativa Japonica Group Os06g0728600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:31890883..31898351

Sequence Coding Region

31890883..31891005,31891937..31893059,31893817..31894035,31894131..31894357,31894713..31894787
,31895153..31895224,31895668..31895766,31895878..31895949,31896034..31896148
,31896358..31896426,31896528..31896855,31897223..31897340,31897425..31898351

Expression

GEO Profiles:Os06g0728600

Genome Context

<gbrowseImage1> name=NC_008399:31890883..31898351 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:31890883..31898351 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggcggcgttcgacgcttacttccgcgccgcggatctggaccgcgacggccggatcagcgggcaggaggccgtcgccttcttcaaggcctccgctctcccccaacccgtcctagcccagatctggacgtatgctgataaaaatcgaactggttttcttggccgtgaagatttctacaatgctcttagacttgtcacggtagcgcagagtggccgagaactgacaccggatattgttaggtcagcgttatatggtccagctgctgcaaaaattcccgctcctaggataaatgtttcaactccacttcctaatgcaactagtgtcactagccccttgcaacccactcaagcacctcgccctgctcagcagagtcttgctatacaaggatcccagggcccccttagcacatcactaaatccacaggtccttcaacctggtaatgttgtcaggccaccacaagcgtcaattgcaaacactcctgctcaggcaattgctccaagggcgcccgcaggtggtgttccaaaccatactgttccagcaacaacaggtctatcaactgattggtttaatggcaagaaaagcgcaagtccattgggtgtaacttcacaaactccaaccagaggtgtttctccacaggtcaaccttgctaccgcgggaataccaacacagagttcaactcctatagcaggctatggctctcacactccagccagtacaacatctgtaaaggcgaattcagcagatttaaaccttctgtcttcaccgccagctgctaatgactccaaggcattggtgcctttggggaatggattatcatcggcctcaacatttggtgtcgacccttttgctgcaactccacaagcaaagcaagattcatcttccccccctgtggtttcaaatagtttgcctagtgctaatgctcttggaccatccgctggacctcatcacccccctaaaccattgcagactggtcccatgcagggtgtagcatcactcccttcacagccagctccaaagcaaaaccagtttaattccatgccaagcgctccagcacctatgggtagttttcctggtggacaaattccttcaaacacgaaccagtctcaagctccatggccgaaaatcactcaagcagatgtaaggaaatatatgattgtatttattaaggtagacagggaccgagatggaaaaattactggtgaagaggctaggaatctgttcttaagttggaggcttccaagagagctcttaaggaaggtgtgggatttgtccgaccaggataaagatgggatgctatctttccgggaattttgtactgctgtgtacttaatggagaggcacagagagcagcgtcctcttcctgatgtactaccagatggtatctgggcagaaggaatttcactaccttctacggggcaatttgcagaaaaccctactggcccagctccccatccaagtgctggatttacaagtagagcaatgccaggacaacatcatgggatgcctccgtcatccatgaaaccaccacctcaaaggccgctttctttggatgctgatgatgcagtgcgaacagaaaaacagaagccaaagatcccagtcttggaggaacatcttactggccagctaagcaaggaggagcgaagtgcattagatgcaaagtttaaagaagcttcagatgctgataaaaaagttcaagaattggaaaaggaaatcctggattcgagagagaagactgagttctatcgcacaaagatgcaggagcttattctttacaaaagtaggtgcgataacaggtttaatgaagtttcagaaaggatgtctgctgataaacgtgaggttcaatcccttgcagcgaaatatgatgagagatgtaagaaggttggagatgtagcatcaaagttatcgatggatgaggccactttccgtgagattcaggagaagaaattggagatttataatgcgatagttaaactgcagaaaggggatggaaatgatgaaaagcttcaggagcgagctaaccagatacaatctgatcttgaggagcttgttaaatctttgaatgaacagtgcaagagatatgggttgagagctaagccaactactcttgtggagcttccttttggttggcaacctggaatacaagagacagcagctgtatgggatgaagaatgggacaaatttggtgatgatggcttctccacaataaaggaactcacagttgaaatggagccacctgttgtacaaaaggatcagcctaccgttgaagacagtaaagtgtctaccaatgggccatcagcacctacatcaacagagaaagaagatagcaggggtgataaatctgccgctgcctctgagcaaactgtagaacctgatgcaactccttccgatagcaaaacggttgcagcaaaaagtcctccagttagtcctgttaagaacacaaaggatggccatagtgatgaacgtgataaaaaacaatctgggacaaacgacacctcgtcacgtgcaattgagagtgtcagtaacaatggaggagcagattcccctgttcatggagaaaagagagacgattcacattattggggcccatcgtttgataatggtgatgataatgactccctatggaacttcaatcgcaaggatggtgagaatggtgattcagacctattctttgggccacaaggtcttcctccaataaggaccggaggctcttcgacggctggtagtgtttatggcaaggaacagaaaccattctttgattctgtcccaggtactccagtggagaagcctttctttgattctgtcccaggcacacccttgcagaaatcagtctttgattactctgttcctagtacaccgatgcagaaatcagtgtttgattattctgtcccaagtacgccattgcagaagtcactctttgattctgtccccagtactccaatgcagaaatcagtatttgattctgtaccaagtactcctatgcagaactctttgtttgactcttttccaagcaccccgatgcagagatcactgtttgattctggcccaagcagagcagaatctcctactgccagcagcatatatggcaaagagcaaaggggtttctttgattcttctgttcccagcacaccaatgtacaactctagcttctcaccaagatatagcgaagctggagacgacagttcattcgacaccttctcgcagatggactcatttggcatgaattacagcaattcatttgggcagcgtgacagcttttcaagatttgattccttccggagcaacgctgatcaaggcagcaatgacacctttggtagatttgattctttccgcagcaatgctgatcaaggtggtggcaacagcttcacgaggtatgattccatgaatagcagcagcgaccatgacagaacagatgcttttgcgagatttgattcaatgaagagcacggactacaacagccgaggttattcgttcgatgaggatgatccttttggtactggaccgttcaagtcatcagacacctctagcccgacgaagcatggaaccgacagatggagtgcattttga</cdnaseq>

Protein Sequence

<aaseq>MEAAFDAYFRAADLDRDGRISGQEAVAFFKASALPQPVLAQIWT YADKNRTGFLGREDFYNALRLVTVAQSGRELTPDIVRSALYGPAAAKIPAPRINVSTP LPNATSVTSPLQPTQAPRPAQQSLAIQGSQGPLSTSLNPQVLQPGNVVRPPQASIANT PAQAIAPRAPAGGVPNHTVPATTGLSTDWFNGKKSASPLGVTSQTPTRGVSPQVNLAT AGIPTQSSTPIAGYGSHTPASTTSVKANSADLNLLSSPPAANDSKALVPLGNGLSSAS TFGVDPFAATPQAKQDSSSPPVVSNSLPSANALGPSAGPHHPPKPLQTGPMQGVASLP SQPAPKQNQFNSMPSAPAPMGSFPGGQIPSNTNQSQAPWPKITQADVRKYMIVFIKVD RDRDGKITGEEARNLFLSWRLPRELLRKVWDLSDQDKDGMLSFREFCTAVYLMERHRE QRPLPDVLPDGIWAEGISLPSTGQFAENPTGPAPHPSAGFTSRAMPGQHHGMPPSSMK PPPQRPLSLDADDAVRTEKQKPKIPVLEEHLTGQLSKEERSALDAKFKEASDADKKVQ ELEKEILDSREKTEFYRTKMQELILYKSRCDNRFNEVSERMSADKREVQSLAAKYDER CKKVGDVASKLSMDEATFREIQEKKLEIYNAIVKLQKGDGNDEKLQERANQIQSDLEE LVKSLNEQCKRYGLRAKPTTLVELPFGWQPGIQETAAVWDEEWDKFGDDGFSTIKELT VEMEPPVVQKDQPTVEDSKVSTNGPSAPTSTEKEDSRGDKSAAASEQTVEPDATPSDS KTVAAKSPPVSPVKNTKDGHSDERDKKQSGTNDTSSRAIESVSNNGGADSPVHGEKRD DSHYWGPSFDNGDDNDSLWNFNRKDGENGDSDLFFGPQGLPPIRTGGSSTAGSVYGKE QKPFFDSVPGTPVEKPFFDSVPGTPLQKSVFDYSVPSTPMQKSVFDYSVPSTPLQKSL FDSVPSTPMQKSVFDSVPSTPMQNSLFDSFPSTPMQRSLFDSGPSRAESPTASSIYGK EQRGFFDSSVPSTPMYNSSFSPRYSEAGDDSSFDTFSQMDSFGMNYSNSFGQRDSFSR FDSFRSNADQGSNDTFGRFDSFRSNADQGGGNSFTRYDSMNSSSDHDRTDAFARFDSM KSTDYNSRGYSFDEDDPFGTGPFKSSDTSSPTKHGTDRWSAF</aaseq>

Gene Sequence

<dnaseqindica>1..123#1055..2177#2935..3153#3249..3475#3831..3905#4271..4342#4786..4884#4996..5067#5152..5266#5476..5544#5646..5973#6341..6458#6543..7469#atggaggcggcgttcgacgcttacttccgcgccgcggatctggaccgcgacggccggatcagcgggcaggaggccgtcgccttcttcaaggcctccgctctcccccaacccgtcctagcccaggtattcaatccccccgcccctccccacatagatcttgcattcgattcccccgaccacctcaatccgcctcaattccgcgctctcctgccctctagccctgcggatttcgacccatgctatctgtgctcatttcttcatgctccctcatctcatctactcctacctctcactcatcgctgctgctgctttatctgcttcctaattcaatcactccctttctctgtatttttctactactcatacttaccaactactagttcacttctcttaccctatggattgtacctatttggagtacctctcaatcaatatatatatagtcacatagatagggaactctactcctccgaggagtgtcattttcttttatcatttataatctacacaattttgtgccccctgttacctcaatgggctcaacttggatcctagttacttctgcactacaagatcacactgtttgtctaattatgctgaccttgtacttcactgtttggaatctactaggtgcttaaaaaaacaactcaactgtagctcgaatcttgaatgatttatggactgctgctttctgatgccaaaatttaggacctttcagctgtgcctgttttcagcgacattaggtttcgagattatgtgattttgttttcaaaggaagggagttgtatggtttggtttcttaaaaaaaaactggaccctggatcttttgtatcattgtcaatatgaccctgttccgtactatcctagaacactcacctctcaaattttcatgcgagtatattggtttgaggtgagaatttcatttaaaaaaaaaaaaaccatccgtgaactgatcttagtgtgttccctttactttctggtattcttaacattctgctttggcaccctcaatattttgcttactaattgcatgccacttaattttctgctgcagatctggacgtatgctgataaaaatcgaactggttttcttggccgtgaagatttctacaatgctcttagacttgtcacggtagcgcagagtggccgagaactgacaccggatattgttaggtcagcgttatatggtccagctgctgcaaaaattcccgctcctaggataaatgtttcaactccacttcctaatgcaactagtgtcactagccccttgcaacccactcaagcacctcgccctgctcagcagagtcttgctatacaaggatcccagggcccccttagcacatcactaaatccacaggtccttcaacctggtaatgttgtcaggccaccacaagcgtcaattgcaaacactcctgctcaggcaattgctccaagggcgcccgcaggtggtgttccaaaccatactgttccagcaacaacaggtctatcaactgattggtttaatggcaagaaaagcgcaagtccattgggtgtaacttcacaaactccaaccagaggtgtttctccacaggtcaaccttgctaccgcgggaataccaacacagagttcaactcctatagcaggctatggctctcacactccagccagtacaacatctgtaaaggcgaattcagcagatttaaaccttctgtcttcaccgccagctgctaatgactccaaggcattggtgcctttggggaatggattatcatcggcctcaacatttggtgtcgacccttttgctgcaactccacaagcaaagcaagattcatcttccccccctgtggtttcaaatagtttgcctagtgctaatgctcttggaccatccgctggacctcatcacccccctaaaccattgcagactggtcccatgcagggtgtagcatcactcccttcacagccagctccaaagcaaaaccagtttaattccatgccaagcgctccagcacctatgggtagttttcctggtggacaaattccttcaaacacgaaccagtctcaagctccatggccgaaaatcactcaagcagatgtaaggaaatatatgattgtatttattaaggtagacagggaccgagatggaaaaattactggtgaagaggctaggaatctgttcttaagttggaggcttccaagaggtacatcactttttttttcccattctaacttctgcgggctctgctgccatggcccatgatctgtgtgatctatgcattttagttaccattgtttgtgattataggcgcaggcaccgcaccagtttgtgtgtgaaagtagaactgttagtttggaaattcatcctgtaattgttagcatccttttttccttttctgccttttatatgattagttgtacatgagttcagtttattcctttgtggatgctaaattcatgtggagattgatgtgtactgtatactggtggacatacataaattgttattattttacttggattatttcctcttagctgcacgttgaattaaacctactagactatggatgctaacctgccatcaatatcgtattgtttcttgtacagctgaagctccgttacagtttgttattgtattcttggaatttagcggcttagcactataatcttttggtattccttacttctatttacatgttctattatcgatgaataaaaagcacacaaacaaacttctatttctttcttagcatatatttattagctcttttttcttcaattgtagattctttctttctatttttttgagccagagggaaaaccttcgttactagaaacaagctacaacagcatcagactgtacattcttctgatgcttgcagttctcctttgacatttgagtttcccttcttcttttctcttttatataagtttctaaatacctgccctctccatttgtagagctcttaaggaaggtgtgggatttgtccgaccaggataaagatgggatgctatctttccgggaattttgtactgctgtgtacttaatggagaggcacagagagcagcgtcctcttcctgatgtactaccagatggtatctgggcagaaggaatttcactaccttctacggggcaatttgcagaaaaccctactggcccagctccccatccaagtgctggtatccatctcaaaaagctgttttgttcatttcctgttactaactgctaaggaagtctcttgtcaataacgggttttaatgaatgtttgctgaaggatttacaagtagagcaatgccaggacaacatcatgggatgcctccgtcatccatgaaaccaccacctcaaaggccgctttctttggatgctgatgatgcagtgcgaacagaaaaacagaagccaaagatcccagtcttggaggaacatcttactggccagctaagcaaggaggagcgaagtgcattagatgcaaagtttaaagaagcttcagatgctgataaaaaagtgtgttcctcatagcatttatttaattgaaatatttcaagaacttgaatgtactaaaaattgagacaaacagtagcaaatcataaaaaaaaattgaagtgaattttacaactggattcatgtgcctaatattttcattgggaagtggattcatgtttaacatttccattgggaaaaaaagctagtggcattaaatcctcaatagatatatttgtcttggcggtaacagcgtatattaccttttttattcatctttggaattccaacatagatttgcatcttcatacgtgatagaatgtgcaaatttaggccttcatgatgtgttttatgaacacattttaaatcttttatgaaggttcaagaattggaaaaggaaatcctggattcgagagagaagactgagttctatcgcacaaagatgcaggagcttgtaagtgatctttatcatcatgccttgttacatatttggcacatgtgtattgataagtaatacagtttatgtttcttgatatgcttgggaaatcttcaggaagttttcattgtttcatattctagtttcaatttccatgaatcgtgcactgctttaggtgctggtacaaaatttccattcaactactgtcatgattaatactcaaacctgctgtatcctacctaccaccgtgccataacccaaatatgcagagctctttgttgataggcaatagatgaaattggattgttgaacatgatctattcatgctttgctatttttgtgaacacatgcctaacttgtttttttttcttattttctcctagattctttacaaaagtaggtgcgataacaggtttaatgaagtttcagaaaggatgtctgctgataaacgtgaggtactgttctcctgtaacttttgattaagaaaatgagctccatgcatacaagttttaatgtgcagacggaggcaaaagagacatgaaaattcatatctctggtctcggtcctctcatacattgaactgtttacattgttttacatcatgagatattgttctgtatgcatctgtaaaaacctcccattgttgcatgctcttcgattaactgccggtcatagatcttgcaatgtgcaacttgtcgtttctatagaattatatgttgcttgagttgaagccagaatgattgttttgtgcactcttaatttgtgtgaattgcaattcaagcattcaactatgccatctgatgtatcttgttgcatcatgatgtgtattgcaacaatgggcactctttatatatggtattttacttgatctcacagtctctgcgaattccatgttcaggttcaatcccttgcagcgaaatatgatgagagatgtaagaaggttggagatgtagcatcaaagttatcgatggatgaggccactttccgtgagattcaggtacaccagtgatatttatggcattatctcagccagtagaaaattgttaaaaaaaagattcatgagatatggactgtgtgagtctgacattattttttctgctatctacaggagaagaaattggagatttataatgcgatagttaaactgcagaaaggggatggaaatgatgaaaagcttcaggtgttttttttaggttcttccagtaccttccatttcatcatactatacaactgttgtttgaccatctttttgttcgttttataggagcgagctaaccagatacaatctgatcttgaggagcttgttaaatctttgaatgaacagtgcaagagatatgggttgagagctaagccaactactcttgtggagcttccttttggtatttgctaccatcctgtttgtctatatatttctatccaacatattcttgtattcttactttagtttgccaggtaaactaagccaaaacgcattttagttcactgctattaacttcatttgctccttgttattaatgaggatcccgctcttctttttatattgcttggcatggtaatggtaggttaactttactatcatattttttaggttggcaacctggaatacaagagacagcagctgtatgggatgaagaatgggacaaatttggtgatgatggtatactaacttgaatcttgattctgttaccagctatgctattaaatttgttcttatataacatttctgaattctactgttgtacaccacctgttcaccaggcttctccacaataaaggaactcacagttgaaatggagccacctgttgtacaaaaggatcagcctaccgttgaagacagtaaagtgtctaccaatgggccatcagcacctacatcaacagagaaagaagatagcaggggtgataaatctgccgctgcctctgagcaaactgtagaacctgatgcaactccttccgatagcaaaacggttgcagcaaaaagtcctccagttagtcctgttaagaacacaaaggatggccatagtgatgaacgtgataaaaaacaatctgggacaaacgacacctcgtcacgtgcaattgagagtgtcaggtattcatcttatatgaactatacagcagatcgtcctactatgaaaacagaaacttgtttccttcccccatatcatcaatttcatacacaaaaggtgtaatctctaattgctctgaacctgtcaactttgttgatcagtaaacatcccaggatttgatactgccattgaactattaagaccgctggtcgctcctacataattcaaccttactagtgctttggtttcccaatatataattgttaaatttatctggagtagggccattcaaatcctgaacttgatacgtgaaacaagtcccagtttgggtagttcattgttgtttacttgtgtgaaacctatgttcttatttcatggtaaattttgcagtaacaatggaggagcagattcccctgttcatggagaaaagagagacgattcacattattggggcccatcgtttgataatggtgatgataatgactccctatggaacttcaatcgcaaggtgcaactcctttcatgcttttgtgctactgtgtcatgcttataagcttctcatcctacttaaactctgcaatctgtttctcaggatggtgagaatggtgattcagacctattctttgggccacaaggtcttcctccaataaggaccggaggctcttcgacggctggtagtgtttatggcaaggaacagaaaccattctttgattctgtcccaggtactccagtggagaagcctttctttgattctgtcccaggcacacccttgcagaaatcagtctttgattactctgttcctagtacaccgatgcagaaatcagtgtttgattattctgtcccaagtacgccattgcagaagtcactctttgattctgtccccagtactccaatgcagaaatcagtatttgattctgtaccaagtactcctatgcagaactctttgtttgactcttttccaagcaccccgatgcagagatcactgtttgattctggcccaagcagagcagaatctcctactgccagcagcatatatggcaaagagcaaaggggtttctttgattcttctgttcccagcacaccaatgtacaactctagcttctcaccaagatatagcgaagctggagacgacagttcattcgacaccttctcgcagatggactcatttggcatgaattacagcaattcatttgggcagcgtgacagcttttcaagatttgattccttccggagcaacgctgatcaaggcagcaatgacacctttggtagatttgattctttccgcagcaatgctgatcaaggtggtggcaacagcttcacgaggtatgattccatgaatagcagcagcgaccatgacagaacagatgcttttgcgagatttgattcaatgaagagcacggactacaacagccgaggttattcgttcgatgaggatgatccttttggtactggaccgttcaagtcatcagacacctctagcccgacgaagcatggaaccgacagatggagtgcattttga</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0728600, RefSeq:Os06g0728600