Os05g0105600

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Revision as of 10:03, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0105600| Description = YT521-B-like protein family protein| Version = NM_001060947.1 GI:115461624 GeneID:4337559| Length = 6971 bp| Defini...")
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Gene Name

Os05g0105600

Description

YT521-B-like protein family protein

Version

NM_001060947.1 GI:115461624 GeneID:4337559

Length

6971 bp

Definition

Oryza sativa Japonica Group Os05g0105600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:282174..289144

Sequence Coding Region

282553..282606,283307..283489,283852..284064,284866..285681,285818..286210
,287285..287403,287501..287639

Expression

GEO Profiles:Os05g0105600

Genome Context

<gbrowseImage1> name=NC_008398:282174..289144 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:282174..289144 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcaggaagaattcgattggccaaccttagtgttatcaacatcaccagaaacagaaaatgttacctccagctctgtgagaagcacaaccaagaatgacgtggttattcagcaaggttccatctcttcatactggccatgggatgtcatgaaacttgaaaacgacacccattttctgtctcattcttcaggagatgggatgaaatgcacaaaggctgaccattttctatctcatgcaaacaggggttcattgaacttggattatcaagaacaaccttcaaagtccaattttgctactgaccttggatcacatgcatattctaaggaagccaggacacttggaagagtatatcatgggcagcagccttacttttccccttcaagctgttcttgggaaaaatcttctgcattaaaagtagtgccaaatagtccagatgcatcagggcatatagtcggggaaatgagaaccaaaaccaacatcctcagtgcaaggtcaaattacctttcatatcctactgatgttcctcatataaggtatcgagatgaagttaaagttgatcttagccaagatgataattccaaacagtacagaagacctgatcaatttactgccttctcaaacttcaatggtcaatcttctgaacaccttgagacagccaaaggggcaaactacatggatgagatcactccaatttcacgtcaatggtgctttgataatagaggcccatcactaccaagagggctggtctatggtgatgagataccatcgctatcttctaagaagtgtaatggcaatgttgcatcatcatattcaagaatatgggattatagtgctgaaaccacatcagtcagacaatgctatggcgataaaatcccatcattgtctcaccattggcactaccgagataagatccccttgcattctggtcagtggtgccatgatgctgaggcacgcccattgtcgaactaccagcaaggtgcttcttatgggaatggtcgtttaagagataatatttccaggggtggtaggaatgagcaagtcaacattatctcaagcagacgtactatgacaaaacctagggtggctaacaaggttgtaagcagcaccgatcactacaagattaataaggataacctatggagaaattctgaggatataagggatcaagttcgtggcccccgggcaaataaattaaataattcttcaacatcatctatcaagaataatgccatccctcctttggtctgtagagatcaaattaatagaccagagttcacagttcagtatgagcatgcaaagttctttatgataaagtcatatagcgaagatgatgttcataaaggtatcaaatacaatgtttgggcaagcactccaaatggtaacaataagctggatgctgcttttcatgaagctcagattttaatgaaggagcagggcaaaaggtgccctatattcctattcttttcggttaataccagtgggcagtttgtaggattagctgagatgttaggtcctgttgatttcaagaagaccatggacttttggcagcaggataaatggaatggatttttccctgtaatgtggcacattataaaggacattccaaatcggttcttcaaacatataactcttgaaaataatgaaggcaaagtagttacttttagcagggacactcaggagattgggctgccccagggtctggaaatgttgaagattttcaaggcatatcaccagggaacatcaattctggatgatttttatttttacgaagaaaaggaaaacatgcgccatgcccagaagggaagaaatttggaaacaaccaatcaagatttgttctctgatgacttcagatcaatatcagtggagaatttggaggccagcatgcagagcttgagtttctatgaaacttgggagtaa</cdnaseq>

Protein Sequence

<aaseq>MQEEFDWPTLVLSTSPETENVTSSSVRSTTKNDVVIQQGSISSY WPWDVMKLENDTHFLSHSSGDGMKCTKADHFLSHANRGSLNLDYQEQPSKSNFATDLG SHAYSKEARTLGRVYHGQQPYFSPSSCSWEKSSALKVVPNSPDASGHIVGEMRTKTNI LSARSNYLSYPTDVPHIRYRDEVKVDLSQDDNSKQYRRPDQFTAFSNFNGQSSEHLET AKGANYMDEITPISRQWCFDNRGPSLPRGLVYGDEIPSLSSKKCNGNVASSYSRIWDY SAETTSVRQCYGDKIPSLSHHWHYRDKIPLHSGQWCHDAEARPLSNYQQGASYGNGRL RDNISRGGRNEQVNIISSRRTMTKPRVANKVVSSTDHYKINKDNLWRNSEDIRDQVRG PRANKLNNSSTSSIKNNAIPPLVCRDQINRPEFTVQYEHAKFFMIKSYSEDDVHKGIK YNVWASTPNGNNKLDAAFHEAQILMKEQGKRCPIFLFFSVNTSGQFVGLAEMLGPVDF KKTMDFWQQDKWNGFFPVMWHIIKDIPNRFFKHITLENNEGKVVTFSRDTQEIGLPQG LEMLKIFKAYHQGTSILDDFYFYEEKENMRHAQKGRNLETTNQDLFSDDFRSISVENL EASMQSLSFYETWE</aaseq>

Gene Sequence

<dnaseqindica>6539..6592#5656..5838#5081..5293#3464..4279#2935..3327#1742..1860#1506..1644#gagagagagattgcaagggaagggaagggaggaagcggaagaagctttttttacccttcccacgagcattcaggggagagggtacgtgcaggagccaaggtccaacaaagcgatacctccttctcctcctcctcctcatcctcgtcatcagattcgccgcacgcgcacggtgaactcctccttccttcctgcatttcgattccctcttctttatcgcattatttcctgccctccattcttctatttcatgccctttctttctttctttctttctttctaataatcgatggcaagatcgatcaacctgttcgtggttttgggtaccactgccgatttcccccacaattccggggtaaaagaaccattttttggggggttattttttgggttaaagattccctttttgtatcacactgggggccataactgtgtgcaagtgctcacctgattttaactggtgaggtttgatcacctataagaccattttaatcgtttggatttagggcgtaatcggacaatgttgccttgttcagagataaaatttgtatcttttgtggttgagcgttgatttaccgaggggactgagttgtataacttttccatcctttttctgccctcgttatgttttgatcagattgattatgtaacggtggtctattgccctatcaacaatctcatttaaacgagcaaataaaagttcaatcaattatggcaatcagttacatatctgctgctgggagaagtaagggttgtaaccctttgtgggaaatggctgactattcataactattatgattatcaaattgttcattcgtctttctgttctccctgcctcactcactggtggcctggtggagtgaatgagtgagggtttactgccaatggtacatttcctttttccatgtaataatcccacattatcacccatttgaacagaaaaatacatataggaactctgctccagctagtcctccgcagaggataagtaaagggagaatttctcataacatatagctgatgcaaggattttgttcaaagtcaccttgtcaaaccatttttcacaatctagagaatatattgtttggttatttaaacatggctttcttgataaatatttgatgaaatgtcgcattgaattttgatccgtctaggcaaatgagtattcaagattgatctctctttaaaggctagcttatatatacatatatattctgcctgatgatcttttatttattttccctgatgactgattgatgtcggattatatctacagaagcagcgattgcataaaatgtgcatgcagctgcttccatgtgaaattctaagagaaatatgatcaccctctgcaataatcttactgcaacctatcttctgctgatgagtttgaagatgctttgccgtagttgttcgccagttgcaatatttgaataataataacagcaagaaataaccatcttattatcagttcttttcttccatttacatacttctattgtgattgacagatgcaggaagaattcgattggccaaccttagtgttatcaacatcaccagaaacagaaaatgttacctccagctctgtgagaagcacaaccaagaatgacgtggttattcagcaaggttccatctcttcatactggccatgtatgcatccggcagtttccaaataaatatattctagttgaggctgttttttgtacaccttgttttattctgtgaaaatctctgtctcattctgcaggggatgtcatgaaacttgaaaacgacacccattttctgtctcattcttcaggagatgggatgaaatgcacaaaggctgaccattttctatctcatgcaaacaggggttcattgaacttggtatggtacaaaactatctgttctactatcgttgatgggaacatttgaagggacatattgctgaaacataaatactgggatgggaatgggtcacagggtaaatatatggatacctatttgatccacactagttcaactaaatacacaacataaactagaaaaaaaaaagcaattttagttgatcagcttgcttgaattagagtggctcaatgggcacccatatattgacccactcccatccctaataaagaagttttgtaggtaaagaaataacaccctaatatactgtactaatcactcaatcagttcagcaattgatatagaatttcaagttgtttgcattatttcaaaattttagttcagttgaagttaacaataaaagcaaggaccaaactgtagccaagttggttggttggtcatgcaggtgtgcataccacccacctaggttaaatcttactccctctgtttttttatagatgatgccgttgacttttgacatgatgtttgaccgtttgtcctattcaaaaattttatataaatgtcagttattttgttgtgacatgttttctcattaaaaaactttaagaatgacttgtactttagcatatttacactatttttttggaataagacgagtcaatggcgtcatctattaaaaaatggaggtagtagatcaaaggcagggaggcaaagcagcaattatattcctttaattaattaggagtagctgctggatttttagccacacttcagagtttcacttgatttgaaacatgcccctttattcatcactattttttgaccaaaggctagaattgctctgcttctcattagaatcaatgtatatttacagtgagtgatgcaagttgtgaaaaatctttcctttgttagtagctgtaatcaatatattatagtaaataaaaccatcatccaggttcaatgtggtaattcaattgtgtttcaatgttaatatgcaatttatggataacatgcactgcattgaaacgtaaagctttgttcatcaggtgaccccttttttctttttgttttgttttgaaacaactcccttctcaggattatcaagaacaaccttcaaagtccaattttgctactgaccttggatcacatgcatattctaaggaagccaggacacttggaagagtatatcatgggcagcagccttacttttccccttcaagctgttcttgggaaaaatcttctgcattaaaagtagtgccaaatagtccagatgcatcagggcatatagtcggggaaatgagaaccaaaaccaacatcctcagtgcaaggtcaaattacctttcatatcctactgatgttcctcatataaggtatcgagatgaagttaaagttgatcttagccaagatgataattccaaacagtacagaagacctgatcaatttactgccttctcaaacttcaatggtcaatcttctgaacaccttgaggtacatctgttgattgtgttaatcataatagagttgttacttctatatacatctctctatctggcatcagtagaaaataattaagatcatttgaattcgggagtatttgaccgtgacaatttttttgttgaaacagacagccaaaggggcaaactacatggatgagatcactccaatttcacgtcaatggtgctttgataatagaggcccatcactaccaagagggctggtctatggtgatgagataccatcgctatcttctaagaagtgtaatggcaatgttgcatcatcatattcaagaatatgggattatagtgctgaaaccacatcagtcagacaatgctatggcgataaaatcccatcattgtctcaccattggcactaccgagataagatccccttgcattctggtcagtggtgccatgatgctgaggcacgcccattgtcgaactaccagcaaggtgcttcttatgggaatggtcgtttaagagataatatttccaggggtggtaggaatgagcaagtcaacattatctcaagcagacgtactatgacaaaacctagggtggctaacaaggttgtaagcagcaccgatcactacaagattaataaggataacctatggagaaattctgaggatataagggatcaagttcgtggcccccgggcaaataaattaaataattcttcaacatcatctatcaagaataatgccatccctcctttggtctgtagagatcaaattaatagaccagagttcacagttcagtatgagcatgcaaagttctttatgataaagtcatatagcgaagatgatgttcataaaggtatcaaatacaatgtttgggcaagcactccaaatggtaacaataagctggatgctgcttttcatgaagctcagattttaatgaaggagcagggcaaaaggtgccctatattcctattcttttcggtcagtaaggatgaaattctcttcttctaagtatcatccttattaagaaaaagtccacctaaaataacgctgagatatattatttggcgtcctagtacctgttgtgtttgatgcttaaatatgatagttaagtgagacatgccggtgctttttttagtgcatgtttgtttgtgtttagtttattgtcttctatttaggaaattgagatgattggctgttgtatcttcactcttcacttgcggacattttatgattttagttttcatcgtgaatgagtattcttaagaaaactatagtgattgatagccatggatccagcttctacagacaacctgctccagattttctttttgacttggttaattatttcaacaatacattgaatttcctttgagcttgtttgattaggagggattagattctgatatctttgtattgttaagatttcagtagaattacttgctcagtcataatccccaccgtctgaaagagctgattttacctgaaatattggtcacaatgtcctgccattagattgagtaatgggcttctctagaagatttgatccactggataccattcaccaaatatgcctgaagcattttttgtcttctttaagtccgttttatcatgtgacaaccaaaagctcttgaagcagctccatatctcgtctgttgtatggctatttttatcatatggttactacatgtgcctgaagcaattccttattatctgttttatgttttatcatctgtccaattttcaagatagttaattttattatgatccctttttttccaggttaataccagtgggcagtttgtaggattagctgagatgttaggtcctgttgatttcaagaagaccatggacttttggcagcaggataaatggaatggatttttccctgtaatgtggcacattataaaggacattccaaatcggttcttcaaacatataactcttgaaaataatgaaggcaaagtagttacttttagcagggacactcaggaggtaccatgcttgtagctttgttctgagacttttttttttgaaagggttcttatagttagaaatggaatactctcttttataatttgtttagtcgtagtctcttttatattggtacaatcaagaacatagaaactaaaaagtattccatatctttgaaaatgaaatggacacttaactattttaaattaggtgtctatatcaggttgccaggttttatttccagtcctctgaagaaaggtttccctttcagattatgaatattctacatgatgtcaaatgctgttattccatgctttgattttttttatccatttgtattgttgattcgtttttatccagcaaccttttgtccttctatgtagattgggctgccccagggtctggaaatgttgaagattttcaaggcatatcaccagggaacatcaattctggatgatttttatttttacgaagaaaaggaaaacatgcgccatgcccagaagggaagaaatttggaaacaaccaatcaagatttgttctctgatgacttcagatcaatatcagtggtatgtgctttctatttagatctttgttttgaatggctacttgataataattttaagacaagatgatacttttgttatgtaaatatatttacgaacaccatgggcattttgtgaacactgattgtggttgcttgccaagtccacatgtcattatgcagaagtgctcttgattagaacgaataatcttcaaacccttcttaacataacgctttaaggagaaacttcacggtttccagtctatctcaaggagagaattaacatgtatagatcctactgttggaaaccagatgatcctgaaccatgtcgtttaagttctcactatttcgaccaactaagatacatagagaaagtgaatatgaaaaaggactgttggaacttctctggatattgtgccggtttctgccacacatggtccgttgttgggctcattgctgcaaaaccaaaccattgtagcatgtattgtgaaatatcttctgatgtagatggcaactggagctaaagatcttgagagtttatgggtcaggaactcgggatagtttagatctctagtgtcctttggtcacttttttcttctgtggcgtgtctgttttaatggaatgtaggttgtgatgtactgtttgtttaatggaatgacacgcagctctcctgtacgttcgagaaaaaaagttagtcttctgatcctgcttatttccatttgtaggagaatttggaggccagcatgcagagcttgagtttctatgaaacttgggagtaatttagattgttctagtgtgcatccaaaatcagtaagttgacgagtcagtgaagcagctcaaggcttgaccctcctttgcaaaattgggttgatccaacgacgggataatacacagatgaatccaaacaattttaatgattatatatatatatagtattttgtgtagaaccacgtatgattgtgggtaaccttagaacaagatttgaacacactgaatgtttgtaatagttacttatctggtggctacagtgactttccatagactagatgaatttgacgaaactggcaagaacaaagcacaagtctgtaggcaataatgccatattatctgcgtgaacaatcatgttgatgaatgtgcatctcttctgatgtgtatgtg</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0105600, RefSeq:Os05g0105600