Os03g0139500

From RiceWiki
Revision as of 19:28, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os03g0139500

Description

Similar to CONSTANS-like protein CO9 (Fragment)

Version

NM_001055451.1 GI:115450630 GeneID:4331566

Length

2397 bp

Definition

Oryza sativa Japonica Group Os03g0139500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:2137673..2140069

Sequence Coding Region

2137876..2137986,2138216..2138338,2138418..2138606,2138819..2139538,2139985..2140008

Expression

GEO Profiles:Os03g0139500

Genome Context

<gbrowseImage1> name=NC_008396:2137673..2140069 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:2137673..2140069 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcttcacgacgattgcatcggtgagggactctcaagccccatagctgctcaaattcttgatttctgcgatgacggcctaggtgatgatctcttcgctgcagtggccactacctccgagcaatttgcagcctcttccgaggatggttcatcgtcgtccacagccacacctcccctctgcagcaacagcaatgacatcacagctgttgcagacacagctttctccccattactctccttcgactccaccctctcagccttccttgagcaagagcaaaaccctgaccaggacaccaagctacttccctccattgatgaaacctttactgcaccagcatactatccagctgccaccgaggccaacatagaacaattcagccaaataatggttccagagcatacagatgcaccaatgcccccaatgcaaacaaacaggactgccaatgccttgctgcctctagcttcagggtatgacgacgagtgtttcacagcagcactagctggagggtacatgggtctggatggaactctgtatgaccaaacaggagtaatgattccaaattgcaatgtggagacaccacaagtaggatttttcaaccataatagtactagtaacaatggtatggtgatggatttgaataattttggagagtaccagaggatgatggaaggtgaaggactgaccagaacatatagcgacacagattcgatgcatggggcgtttaataacgctgcagagatgcagatgggagaaaacacccagcacatggtaactggatgcaatgatagcccactaacgttgccttcaacagaaggctcaagcttggaagataccccctacaaaggtgtgcgtctaacagctgaacagagaaaggaaaagatctccaggtacataaagaaaaggaacgaaaggaacttcagcaaaaaaataaagtacgcttgtagaaaaaccttggcggatagcaggcctcgggtccgcggaaggtttgccaagaacgacgaactctgtgaagctaccagatcaagctcccaagattttgaacaatatgaacatgttgtgggaatgaagggagaagacatgcttgattcttccaatattttggcacatttgagtggaatgaacccttacggctataagtacaacagcactgtggaatcctggatataa</cdnaseq>

Protein Sequence

<aaseq>MLHDDCIGEGLSSPIAAQILDFCDDGLGDDLFAAVATTSEQFAA SSEDGSSSSTATPPLCSNSNDITAVADTAFSPLLSFDSTLSAFLEQEQNPDQDTKLLP SIDETFTAPAYYPAATEANIEQFSQIMVPEHTDAPMPPMQTNRTANALLPLASGYDDE CFTAALAGGYMGLDGTLYDQTGVMIPNCNVETPQVGFFNHNSTSNNGMVMDLNNFGEY QRMMEGEGLTRTYSDTDSMHGAFNNAAEMQMGENTQHMVTGCNDSPLTLPSTEGSSLE DTPYKGVRLTAEQRKEKISRYIKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDE LCEATRSSSQDFEQYEHVVGMKGEDMLDSSNILAHLSGMNPYGYKYNSTVESWI</aaseq>

Gene Sequence

<dnaseqindica>2084..2194#1732..1854#1464..1652#532..1251#62..85#gggtccaaaagagctccaccgcaatgcaaccaatcccttgtctctccgtcgaggatcagtaatgcttcacgacgattgcatcggtgtaattgtttcgtcaacacagatctttgctcagtttttcttgatgtttctgagcctcttctatgttatcgtcttaaatttttcatgtatcttgtttgtgcgtatgctcattggattgtaactgagatgacgacatgctgctccccaggccaatcagtacatacctgcatacatgatacaatagttattatgaagtctatagtgaaaaaggaacgcacgatgtagaaattttattcaaaagcatcagatcaacatgaaacctttcggatttgggtccgtggcagcagtaccagagatctttttttttctatgacatcctgtgagctgcaatagtcatacatgtgcaaatttattggaatggtctgttgttcctataattctttcttataataaaaaatttcaggtaataaaaggtacttacaggttcattcccatttaattttacaggagggactctcaagccccatagctgctcaaattcttgatttctgcgatgacggcctaggtgatgatctcttcgctgcagtggccactacctccgagcaatttgcagcctcttccgaggatggttcatcgtcgtccacagccacacctcccctctgcagcaacagcaatgacatcacagctgttgcagacacagctttctccccattactctccttcgactccaccctctcagccttccttgagcaagagcaaaaccctgaccaggacaccaagctacttccctccattgatgaaacctttactgcaccagcatactatccagctgccaccgaggccaacatagaacaattcagccaaataatggttccagagcatacagatgcaccaatgcccccaatgcaaacaaacaggactgccaatgccttgctgcctctagcttcagggtatgacgacgagtgtttcacagcagcactagctggagggtacatgggtctggatggaactctgtatgaccaaacaggagtaatgattccaaattgcaatgtggagacaccacaagtaggatttttcaaccataatagtactagtaacaatggtatggtgatggatttgaataattttggagagtaccagaggatgatggaaggtgaaggactgaccagaacatatagcgacacagattcgatgcatggggcgtttaataacgctgcagagatgcaggtaatattcacatcctatttttttgaaataaaaagtgttatacatgcccaactattatgtaacacactgaactttatacttcttgctactatagtaagaaaataggtgcatgaagttctcatgaataaaagagcaaagctccagaaattagcggacagataataatttgtgaaataccatcagtatctaacccaattattttacctgaacagatgggagaaaacacccagcacatggtaactggatgcaatgatagcccactaacgttgccttcaacagaaggctcaagcttggaagataccccctacaaaggtgtgcgtctaacagctgaacagagaaaggaaaagatctccaggtacataaagaaaaggaacgaaaggaacttcagcaaaaaaataaaggtaatattgaacatttcaagaacataactacatgcatcatcttaccaaatttattgtactgatgtaaaacaaaatgcagtacgcttgtagaaaaaccttggcggatagcaggcctcgggtccgcggaaggtttgccaagaacgacgaactctgtgaagctaccagatcaagctcccaagattttgaacaatatgaacatgttgtaagtgttctaactatcttatcagaaaatagaccaaatttagctgaaaatatcacaaataaatatgcaagggcaagattacctcattagccttagagacaattcatcaagatggttattcaatcatctcatcatttttctccattgcagtcatagattaaagatttaaattcgtatcatttttttataaaatagctaaataccaagttcaatcattttgttttttcaggtgggaatgaagggagaagacatgcttgattcttccaatattttggcacatttgagtggaatgaacccttacggctataagtacaacagcactgtggaatcctggatataattctcataaacacacaaattaaagtgtgttttcctttcaattgtgcaagcattaaacacagttttcccttgctcccagtaaataagactgatgctttagaagctctattcgcaagagaagtgcttaggtcaagttattgtttctgcacactactgatttgtaaatagaattgtttccttgtcataatagagataacaagtttc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0139500, RefSeq:Os03g0139500