Os05g0113000

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Revision as of 10:03, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0113000| Description = Amino acid-binding ACT domain containing protein| Version = NM_001060988.1 GI:115461706 GeneID:4337602| Length = 372...")
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Gene Name

Os05g0113000

Description

Amino acid-binding ACT domain containing protein

Version

NM_001060988.1 GI:115461706 GeneID:4337602

Length

3726 bp

Definition

Oryza sativa Japonica Group Os05g0113000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:679625..683350

Sequence Coding Region

679684..679912,680728..680946,681040..681145,681277..681616,681942..682424

Expression

GEO Profiles:Os05g0113000

Genome Context

<gbrowseImage1> name=NC_008398:679625..683350 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:679625..683350 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccgccggtgggggaggtggcggcggcggaggcgagatcggggatggtgctcgggggaggggcggcggcggcggcggtggggggaggggaggacgcggtggtgatgcaggtggcgggggcggaggggcaggacagcgtcatcaccatcaactgccccgaccaggcgggcctcggctgcgacctctgccgcaccatcctcgagttcggcctccgcatcacgcgcggcgcagatgtgtctacggatgggcaatggtgcttcgttgtgttctgggtcgtgccccgcacgccatcaatcaaggtccggtgggcgaatctcaagaaccgcctcatgtcaatgtgcccgtcaaattacccaatgactttctaccctgagatcacccagccaggcccctcccagttctaccttctcaagcttttctcagctgatcgcaaagggctattgcacgatgttacgcatatattatcggaactagagcttataatccacagagtgaaggtgtcaaccacgccagatggcagagttattgacctcttcttcatcaccgacggcatggaattattgcacacaaaggaaagacaagaagagacttgttcgatgctgattgctaccttaggtccttccataagctgtgaaatcctattagcagaagggttccagcaaggattctcttctctcccaccgacaatctctgaggagctgttcaggttggaactggctgatggtgacaactgttcaaggtcaatttgtgcggagatgaaaagagtgcagaaagcaaccatcaactttgacaataccctgagccccgcacacacactgctccaaattaactgtgctgatcaaaaggggctcctttatgatattttgagaacaatgaaggactgcagcattcaggtaacatatggccgattctggtcagacaagaaaggttttcgagaggtggatctttttatcaagcaagcggatggaaagaagattattgatcctgagaaacaggatgttctcagctcacgcctgaggtcagagatgctccatcctctcagggtgatgattgtcaaccggggtcccgatgtagaactccttgttgctaaccctgttgagctatccgggaagggacgaccacgtgtattctacgatgctacatttgctctgaaagcgcttgggatctgcattttctctgtaagaatcacagaatattcagagagggttcaaaatgaatttgtatttactctcttgcttatgcatttcaggctgaaattgggaggcaggcagcatcagagcgtcaatgggaggtctacagattcctcctggatgatagcagtgagttcccattgtcaaacagccttgtcaataggaaccgtattgtcgacagggtaa</cdnaseq>

Protein Sequence

<aaseq>MPPVGEVAAAEARSGMVLGGGAAAAAVGGGEDAVVMQVAGAEGQ DSVITINCPDQAGLGCDLCRTILEFGLRITRGADVSTDGQWCFVVFWVVPRTPSIKVR WANLKNRLMSMCPSNYPMTFYPEITQPGPSQFYLLKLFSADRKGLLHDVTHILSELEL IIHRVKVSTTPDGRVIDLFFITDGMELLHTKERQEETCSMLIATLGPSISCEILLAEG FQQGFSSLPPTISEELFRLELADGDNCSRSICAEMKRVQKATINFDNTLSPAHTLLQI NCADQKGLLYDILRTMKDCSIQVTYGRFWSDKKGFREVDLFIKQADGKKIIDPEKQDV LSSRLRSEMLHPLRVMIVNRGPDVELLVANPVELSGKGRPRVFYDATFALKALGICIF SVRITEYSERVQNEFVFTLLLMHFRLKLGGRQHQSVNGRSTDSSWMIAVSSHCQTALS IGTVLSTG</aaseq>

Gene Sequence

<dnaseqindica>60..288#1104..1322#1416..1521#1653..1992#2318..2800#ggactccacaggaggaggaggaggaggaggagagagggatccggaatctcgcgggggggatgccgccggtgggggaggtggcggcggcggaggcgagatcggggatggtgctcgggggaggggcggcggcggcggcggtggggggaggggaggacgcggtggtgatgcaggtggcgggggcggaggggcaggacagcgtcatcaccatcaactgccccgaccaggcgggcctcggctgcgacctctgccgcaccatcctcgagttcggcctccgcatcacgcgcggcggtcaggactccctctccctctctccctaccaatcaataatcgctctcgtcttctcctcctgtcttaattagggctgcttgttcgagcctaggttttaccaaaatctgaattgcagtcaaagaattggagacattagattttttatttatttattttagcatgatgtttcgttttttttggggggcttgctggtgttcttgagcgtgagagatttttttttttttgagttttagtgttgcccgactgcttctctttctctgtctttggaatctggatgatcagtttgctctttttatctttttcttttcttttttctgtgcggtgccgtctttctcggaaaagatttccaactttttagctgtttccgttccaagatatatatcgatcagttaaactttttagctgtttccgttccaagatatgtatcgattagttagacacagctcagttccaatttgttttgtttaatctcatcgttatcggatttacctacgccaagtcgccgtctaggttcatgtcgctgttgctgtgtgctcactgcatttcagattcatgtcggccttactaatcattggagcttccatcttaaaacattaattctgtactgcatcataacctgacgaaccactgcaacttgcaactactagtacttactcatgataagtaaacttcttttatttagtttcaaaaaaactatgtactatgtacttgcaagtgctgtgcactgtttcaactgcttcatcaaaactatgttcttcaatccttcttttaatccttccgtcaacatctgaaattcgtttctttggcaattttagcagatgtgtctacggatgggcaatggtgcttcgttgtgttctgggtcgtgccccgcacgccatcaatcaaggtccggtgggcgaatctcaagaaccgcctcatgtcaatgtgcccgtcaaattacccaatgactttctaccctgagatcacccagccaggcccctcccagttctaccttctcaagcttttctcagctgatcgcaaagggctattgcacggtgagaacctgagcatctctttctaccttccaaacttcaatgtttgaagtagaccaagctgtgatataattacaagtgccatatgatatgcagatgttacgcatatattatcggaactagagcttataatccacagagtgaaggtgtcaaccacgccagatggcagagttattgacctcttcttcatcaccgacggcatgtaagttgtcattgttaaagtttaggtcctttggttatgttgccactttgaacaagctgcttgtgcaatatgctgccgagctgcaacacataataattctattatatgactgttgatacttatatgtgaagggaattattgcacacaaaggaaagacaagaagagacttgttcgatgctgattgctaccttaggtccttccataagctgtgaaatcctattagcagaagggttccagcaaggattctcttctctcccaccgacaatctctgaggagctgttcaggttggaactggctgatggtgacaactgttcaaggtcaatttgtgcggagatgaaaagagtgcagaaagcaaccatcaactttgacaataccctgagccccgcacacacactgctccaaattaactgtgctgatcaaaaggggctcctttatgatattttgagaacaatgaaggactgcagcattcaggtacacggagatatattgcctgtattgtagtatataactaatgccatgaatgcttattaatctgtaacattcagataattttgcaaaagtaagactgggggatttagatgttctggacatctgagggtactgtcaccttagaaattactaagatatattaacaaacaagtttcccaccttcttgttaagaaagtttataaccatcaaatgctacataatgatctgttatctgttatctagtcatggcttacaggggacaatagttgtttatcaaagctgtcgctagtatatagtttgaatgtaccataactcaataccttttcaggtaacatatggccgattctggtcagacaagaaaggttttcgagaggtggatctttttatcaagcaagcggatggaaagaagattattgatcctgagaaacaggatgttctcagctcacgcctgaggtcagagatgctccatcctctcagggtgatgattgtcaaccggggtcccgatgtagaactccttgttgctaaccctgttgagctatccgggaagggacgaccacgtgtattctacgatgctacatttgctctgaaagcgcttgggatctgcattttctctgtaagaatcacagaatattcagagagggttcaaaatgaatttgtatttactctcttgcttatgcatttcaggctgaaattgggaggcaggcagcatcagagcgtcaatgggaggtctacagattcctcctggatgatagcagtgagttcccattgtcaaacagccttgtcaataggaaccgtattgtcgacagggtaaggaaaacgctgctgggctgttacaactgagacttggtttctatctccaccaatccaaagctcaaagacaactgatacagtcagtatccaaactgttccagttaattaccaggcgaacgctcagactaggactactccaggtttgtcactgccggtgataaacttgctgccataactggctggtatcactgcctacaattgccagttttctgttcatgtcatcatgtcattgaaggatatgttacgggtttgtgaccaactcatcgtgttcagtggtgatggaagaaagtatctttatgaaggtcgcctgcttgtcatcttcagaaagagctggcaatatgtgtaacaaaggagcggatgacatacccagaatatgttatttggagttacatactctgagcactgttgtaaatggtttctgaaaatgacaaatgagcataattgcatctccgtctcccaattccaatccattttcacgttgctcacatgttatgtcatgaagagagaaagaaagagaggaaaaaggcatatgtttggtgggaggagcaaatcggagcttcaattattgtgctttgttttggccagggtattactggatgctgacacagatacatgagcttgttgtaaagtagtgcaagatgtgccatctgcctcacctgccttgctttcctgcctccttcctaccttcctgtatgattgctatttcttgagtagattaaccctgttccctgatgtggggtttgtacttgtcactttgtcagcattcatgctagtttctagagcttagagccctagtttgttaatgcaaaagcatattataaatatatgtaccatctggttgtaaatgactcgatgaaattctctagtgaccactattctcgtgtacattgttttgaaccaaacacctgaataatttgatcagtaatt</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0113000, RefSeq:Os05g0113000