Os03g0308800

From RiceWiki
Revision as of 19:34, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os03g0308800

Description

Protein prenyltransferase domain containing protein

Version

NM_001056442.1 GI:115452612 GeneID:4332620

Length

4679 bp

Definition

Oryza sativa Japonica Group Os03g0308800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:11043539..11048217

Sequence Coding Region

11043820..11044257,11044488..11044664,11044926..11045036,11045757..11046002,11046346..11046405
,11046504..11046809,11047401..11047544,11047769..11048167

Expression

GEO Profiles:Os03g0308800

Genome Context

<gbrowseImage1> name=NC_008396:11043539..11048217 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:11043539..11048217 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgatgcggctcttcccgtcctcgtctccgctcccgccgccgccgcctctgctcccgagccccagcgcgaaggcaccgccgtccgcgcccttctcactctccctccgcctccgccgcgcgcgggtggcagcctccgcggccgctgcggcggggggccccgagaggggggcgggcgggtacgagggggatgcggaaggcgagggcagcagcggggcgttcgacaggggaatgtcggagatcgcgaggaaggtgcctctcttcgagccggcgaggggcgacgccgcggcggtcgccggcgagcggccgctgcccatcaacctcgagctctggctctaccgcgcaaaggtgcacacgcggaagtacgagttcgccgacgcggagaagctcctaaaccagtgcatcatgtattggccggaagacgggcgtccatatgtggcgcttgggaagctatacagtaagcagtcgaggtttgacaaggctagagcggcttatgaaaggggttgccaagcggcacaaggtgaaaacccgtatatttggcagtgttgggcagtcctagaacgcaaaggtgggaatattcgaagagcacgggagttatttgatgctgctactgtagctgatgcaaagcatattgcagcttggcatgggtgggctattttagaaatcaagcaaggaaacattaaaaaggctcgaaatctacttgcaaaaggtctaaaatattgtggaggaaatgagtacatttaccagactcttgctctgcttgaggctagagcagagcgctttgaacaagcacgaactttattccaacaagctacccaatgcaatcccaaaagctgtgcaagttggctagcatgggctcaggtagaaattcgtgcagaaaacaatgccatggcaagaaaactctttgagaaagcagtccaggcaagtcctaagaacagattttcatggcatgtctgggcactatttgaagcagaacaaggtagcatcgacaaagcaaggaagttacttaagattggtcatgctgtgaaccctagggaccctgtgattcttcagtctcttgcactactggaatacaactactcatctccaaataccgcccgtgttttatttagaaaggcatctcaaattgatcctaggcaccaaccagtttggatagcttgggggtggatggaatggaaagaaggaaacgccagaacagcaaggacactgtatcaaagagctttgtcagttaattcaactaatgaatgtgctgctcgatgtcttcaggcttggggagtcctagaacagcgggccggtaactacaccgctgccagaagattgctgagatcttcactgaacataaattctcagagtgaggtaacatggatgacatgggctgcactagaggacgaacagggtgatccagttcgagctgaagaaatacggaacatctattttcagcagcgtaccgaggttgtggatgatgcctcctgggtcatgggcttcctcgacatcattgatcctgccttagacagcgtgaagaagctcctaaacatagaccagccttcggggcctgcaacacgagacaatccgaaaagcactggagagccaagcaatacagctaccgtccggacttctgccgatgcagagttttctggcggttcaagagcagaaggatcggacgcttcggaccttgctaacgccgatgacaaggagagcgatgacgctgcagagacaccagagagcgatttcgacgtggatggattcatcaggaggcggctagccctggacccggccgagctggacgcggtgcttgagggttctgatcccaggggagttgtttccaggaggaggacgcagaggttgcccaggaagccccttcctcttctccctgttccgtaa</cdnaseq>

Protein Sequence

<aaseq>MAMRLFPSSSPLPPPPPLLPSPSAKAPPSAPFSLSLRLRRARVA ASAAAAAGGPERGAGGYEGDAEGEGSSGAFDRGMSEIARKVPLFEPARGDAAAVAGER PLPINLELWLYRAKVHTRKYEFADAEKLLNQCIMYWPEDGRPYVALGKLYSKQSRFDK ARAAYERGCQAAQGENPYIWQCWAVLERKGGNIRRARELFDAATVADAKHIAAWHGWA ILEIKQGNIKKARNLLAKGLKYCGGNEYIYQTLALLEARAERFEQARTLFQQATQCNP KSCASWLAWAQVEIRAENNAMARKLFEKAVQASPKNRFSWHVWALFEAEQGSIDKARK LLKIGHAVNPRDPVILQSLALLEYNYSSPNTARVLFRKASQIDPRHQPVWIAWGWMEW KEGNARTARTLYQRALSVNSTNECAARCLQAWGVLEQRAGNYTAARRLLRSSLNINSQ SEVTWMTWAALEDEQGDPVRAEEIRNIYFQQRTEVVDDASWVMGFLDIIDPALDSVKK LLNIDQPSGPATRDNPKSTGEPSNTATVRTSADAEFSGGSRAEGSDASDLANADDKES DDAAETPESDFDVDGFIRRRLALDPAELDAVLEGSDPRGVVSRRRTQRLPRKPLPLLP VP</aaseq>

Gene Sequence

<dnaseqindica>3961..4398#3554..3730#3182..3292#2216..2461#1813..1872#1409..1714#674..817#51..449#gctgctttgctacggccggagcggcagagcacactccggcgaggggggccatggcgatgcggctcttcccgtcctcgtctccgctcccgccgccgccgcctctgctcccgagccccagcgcgaaggcaccgccgtccgcgcccttctcactctccctccgcctccgccgcgcgcgggtggcagcctccgcggccgctgcggcggggggccccgagaggggggcgggcgggtacgagggggatgcggaaggcgagggcagcagcggggcgttcgacaggggaatgtcggagatcgcgaggaaggtgcctctcttcgagccggcgaggggcgacgccgcggcggtcgccggcgagcggccgctgcccatcaacctcgagctctggctctaccgcgcaaaggtgcacacgcggaagtacgagttcgccgacgcggagaagctcctaaaccaggtgcgttccttgagaattgtggatatttcgcaacgaaagcagaataaacacgcacaaaaaaaaatgctcccacagcttagcaaattgacaaggcatatatagctagttgaagcctgaaggaagcgaatgttttcctcctatatcgataatataggggtttaacaatcctaatttgagttgtttaatagttgatggatcttgcgccgcgtatctgatttatgcagtgcatcatgtattggccggaagacgggcgtccatatgtggcgcttgggaagctatacagtaagcagtcgaggtttgacaaggctagagcggcttatgaaaggggttgccaagcggcacaaggtgaaaacccgtatatttggcaggtttgcaccggatcacttctcagcctccatttggtaaattgactggaaaaaactgtacagcaccaaaaaaaaaagtagcgcgtgaggtttcttctttaacattccctaagatatgttaatattccttagctgtgtttggagttcaactttcaaagttctccaaatggatgaccatgcccattagcaattcacaatgaagagttattttaggcatttgagcttcagttgcatacattgctttcctctcaaatatggatgcaagatgaatagatctagtccattgcactttgttcacaggaacatcaatgtgattgatggctgatcatgagatatgaatacactgctcctatcatggccatttgccctcttcttttcaagtacttaactcatatgtcaaacataatctcttggattttctgaataagtctaaagacttttggtttgatacaccgggctgggatcatctttcacgatccacaatttcacactgaacaaaccagtccactgttttcttatgatcatatcttgttcatgttatagaaattaagcatataattaagttcctgttgtccttttgctttgagtatgcagtgttgggcagtcctagaacgcaaaggtgggaatattcgaagagcacgggagttatttgatgctgctactgtagctgatgcaaagcatattgcagcttggcatgggtgggctattttagaaatcaagcaaggaaacattaaaaaggctcgaaatctacttgcaaaaggtctaaaatattgtggaggaaatgagtacatttaccagactcttgctctgcttgaggctagagcagagcgctttgaacaagcacgaactttattccaacaagctacccaatgcaatcccaaaagctgtgcaagttggctagtaagtatttgcttcataatttatccattttagtgcaaataaaaactgcatagtttttttgtctaaactgtgaacttatgtacggcaacttctagtaggcatgggctcaggtagaaattcgtgcagaaaacaatgccatggcaagaaaactctttgaggtaataatttattttctatttataattgttcccatgaatgtttgcgttagttcttcggtactcatacttgaaagttttctaacagagatccatccatttccacatggcaaattagaaaagatttcccaagtagagatgaaataatctttaatccaacccagagaactgtgctttcaaaatgattttactaccacatatcaatgcaatgatgtggcaataatttttataacttaataatatgctgttagtgtgattcactccatagttcattcacacctgcatgggatggtttcagtcaacacaatgctgtctacaaagtataatttcgaatttctttttacagaaagcagtccaggcaagtcctaagaacagattttcatggcatgtctgggcactatttgaagcagaacaaggtagcatcgacaaagcaaggaagttacttaagattggtcatgctgtgaaccctagggaccctgtgattcttcagtctcttgcactactggaatacaactactcatctccaaataccgcccgtgttttatttagaaaggcatctcaaattgatcctaggcaccaaccagtttggatagtatggattttctgtgcttatctctcttttttttataagtaatatattactcatttgagccgcatttgtttttttacacctctggttaaattaacttgtaggctttgttttagtattatttacctgacatttcgcaaatagctatgattaattagtttatggcacttcttgatgtaccttgcacacttgagctgcatcttgcaacttgcaagtgctctggctgttcaccttcctgtcacaaatcacaactgaatatgcacacgatacaaataatttgggatttgatggatgtaaaggttcagttgagtgcagttgtctgaattattttgttttagttactttcaagatgctatatatctcatcgttacatttgtccatatttgtgctcatttaggctgttacttgggatctcccgttcaacactacctttagaatttcgtttttctatttgcacttatttagacttgtgcaaagcactatatatcttacaatcaaggaagcatcgcatgttcctggccagagtaaagtaaaaatatttgttatgaactgttagttggtagaggtggtattaagtgagcaaatctattacaccaattttaaatccctagatggatctgtcttgttttatcttgcaaactgtcacgtttgcatttgtttatggaatctcttttatttggactatctttgaagcttagctctgacttatggatcatgttataggcttgggggtggatggaatggaaagaaggaaacgccagaacagcaaggacactgtatcaaagagctttgtcagttaattcaactaatgaatgtgctgctcgatgtcttcaggtaaatgatctattgatggcaatccagctcatattgaactggtagctatacgtttttgctggccgatagctataggagtaggtttttgtctcacgtggtaatgtgttactattgaataataatactatgagtttcatggtttttggaagatgaatgcttctatgtgtgaagtttcttctttactggaactgctgtactcatttgtgatcgaaagactcaaatttctgtacacttaaaacatatcctgccctatttttgtaggcttggggagtcctagaacagcgggccggtaactacaccgctgccagaagattgctgagatcttcactgaacataaattctcagagtgaggtaacatggatgacatgggctgcactagaggacgaacagggtgatccagttcgagctgaagaaatacggaacatctattttcagcaggttagtcccgggtaactacttttagatatgagtactgggtaactttagagtagcatctttctcaattcatgtttattgagttaaaaggcagtaaaatggaattatttttcttcatgttttgtgattaccaatttcatttgcatcacccatgaacaacgtattaacaacaattgctggtgttcgcatcatctctgttgaagtttctccctgatcattatccatcctgacagcgtaccgaggttgtggatgatgcctcctgggtcatgggcttcctcgacatcattgatcctgccttagacagcgtgaagaagctcctaaacatagaccagccttcggggcctgcaacacgagacaatccgaaaagcactggagagccaagcaatacagctaccgtccggacttctgccgatgcagagttttctggcggttcaagagcagaaggatcggacgcttcggaccttgctaacgccgatgacaaggagagcgatgacgctgcagagacaccagagagcgatttcgacgtggatggattcatcaggaggcggctagccctggacccggccgagctggacgcggtgcttgagggttctgatcccaggggagttgtttccaggaggaggacgcagaggttgcccaggaagccccttcctcttctccctgttccgtaaatatttccacttcagttcaacaatgcacatttgccatctacgccgtgcgaagcatcgaccactaacagtaacaggtaccgtgactcgcgagatagttgaacatacatatctgtgtatatctctcagaagaagagcgcggcggctgccattagcagccacatgtttgttactagagttgttattggtccacccaggtgtatgtaattctatcattcttcaggagcagtgtatctgtgtacataagcgcaatctatcaatttgtatgtgctagtgaagaattc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0308800, RefSeq:Os03g0308800