Os03g0348900

From RiceWiki
Revision as of 19:35, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os03g0348900

Description

Zinc finger, CHY-type domain containing protein

Version

NM_001056640.1 GI:115453008 GeneID:4332833

Length

2436 bp

Definition

Oryza sativa Japonica Group Os03g0348900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:13147798..13150233

Sequence Coding Region

13148029..13148154,13148258..13148296,13148599..13148668,13148800..13148891,13149012..13149094
,13149220..13149260,13149365..13149408,13149498..13149575,13149658..13149690
,13149779..13149817,13149927..13150014,13150139..13150188

Expression

GEO Profiles:Os03g0348900

Genome Context

<gbrowseImage1> name=NC_008396:13147798..13150233 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:13147798..13150233 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagctcgacgacgcgtctcgccacggattcggcaggatgggatttggatgcaagcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgccgccattgccacaacgagtccacgaaagacggccacgagctcgatcggcacgcggttgaatcggttatctgtctcgtctgtgacaccgaacagccggttgcgcaagtgtgctacaactgcggcgtttgcatgggcgagtacttctgcagcgcgtgcaaattcttcgacgacgacgttgacagggaacacttccactgccaagattgcggcatctgcagagttggagggaaggataacttcttccactgcgaaaaatgtggatcatgctactcggtcagcctgcgcgacaagcactgctgcatcgagaactccatgaagaacaactgccccatctgttacgagtatctgtttgactctctaagggagacgtccgtgctcagatgtgggcacacgatgcacctgcaatgcttccacgagatgctgaagcacgacaagttctcttgtcccatatgctcgatgcctatctttgacatggacaagttcttgagggctttggacgctgagattgaagcaaatatgctgcacatagattacatgggaaagggatggatcgtgtgcaacgactgcagggacacgacgcaggtgtacgcgagggtggcagggcacaagtgctgccattgccagtctcacaacacctgcagggtggctgccccggtgctccctgcttaa</cdnaseq>

Protein Sequence

<aaseq>MELDDASRHGFGRMGFGCKHYRRRCRIRAPCCNDVFHCRHCHNE STKDGHELDRHAVESVICLVCDTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVDREHF HCQDCGICRVGGKDNFFHCEKCGSCYSVSLRDKHCCIENSMKNNCPICYEYLFDSLRE TSVLRCGHTMHLQCFHEMLKHDKFSCPICSMPIFDMDKFLRALDAEIEANMLHIDYMG KGWIVCNDCRDTTQVYARVAGHKCCHCQSHNTCRVAAPVLPA</aaseq>

Gene Sequence

<dnaseqindica>2080..2205#1938..1976#1566..1635#1343..1434#1140..1222#974..1014#826..869#659..736#544..576#417..455#220..307#46..95#agcggcgcgcgaggctgctcggatctcgccgcggccatcgaaccgatggagctcgacgacgcgtctcgccacggattcggcaggatgggatttgggtaaattcctctgctctgcacttctcctcctcctccttgccgctgctgttcttggacaagaaaagctttcgtgttctttcttcgttttgtttttgagctcatcgagtcgttggcgcgcgcgcagatgcaagcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgccgccattgccacaacgagtccacggtttcgtctcccccgcgtgcttgcttgcattgcatcaccaatcctgaattttatttttattttttctgctcctgcctttctgatgtgccgctccctgttcttggatcagaaagacggccacgagctcgatcggcacgcggttgaatcggtgggtgctcctatatcacatcaattcgatcctgtttcttgatctgaaaaaaactgaaaaaacttatcttggggtatctgctcttcaggttatctgtctcgtctgtgacaccgaacagccggttagtgttgaatccactgggctttcctttccgtttcttggatcaatttttgtttctgaccggtgattttttttttgagcaggttgcgcaagtgtgctacaactgcggcgtttgcatgggcgagtacttctgcagcgcgtgcaaattcttcgacgacgacgtgagatgccgatgctgcttgctttgcttctgctggatctggtgattttcgatttggttgttgatgagatgcacgttcgtgttctgcaggttgacagggaacacttccactgccaagattgcggcatctgcaggtatgtttttaccacaccatctaaaaaaatcacttaaaaagtgggaatgcatttcaaattttctgagctgactgaatttgggatgcattgcaaatttgcaatagagttggagggaaggataacttcttccactgcgaaaaatgtggtgagtcagtgtgatcctacatctctcgatactcggtactgaaatcccaagctattactatttactggtgagatggttgaatctgaatctctcaattccacttttaaatatctgttgaaacacaggatcatgctactcggtcagcctgcgcgacaagcactgctgcatcgagaactccatgaagaacaactgccccatctgttacgaggtgtgtgttctaatgttcttctgccagaacagaacagtgacgctaccttctgcatactgttcatttaaaaaaaatgcagtctcttatgtacgaaactgtcgatcgtcatcacaaatgcagtatctgtttgactctctaagggagacgtccgtgctcagatgtgggcacacgatgcacctgcaatgcttccacgagatgctgaagcacgacaagtaatcgcccatgctgtgttgatctgtttccatgtggctctttctttctttgtttgtttctttactttgtgtgctagattagtcatctctttcgtgtgatcttgttcttcttggatgcctgataattgtaggttctcttgtcccatatgctcgatgcctatctttgacatggacaagttcttgagggctttggacgctgaggtatgtattaaatttcttagtgagcttgcttaacacaatagcattatacaactagacttcatctttcaatttatttaatagacctgttgtaggttcagaaatagtgaatataaaataaaccaaaatacaaatcatatgcaaaggaactaaaaaaccggaccagatattggctcatcatttcaattacattttggaaaggtttcaaacttgcagagttgcagtagtctcaccaatctaaagccttagtgataattaatttgtaggaatactgccataatatgttcattttttaacctctgcagattgaagcaaatatgctgcacatagattacatgggaaaggtaagcttgcctccatccaagaactctcaccctgtgccatttgacagtataaaatactacatacactttgacgctaatgttgctgattggtgttggtttgcagggatggatcgtgtgcaacgactgcagggacacgacgcaggtgtacgcgagggtggcagggcacaagtgctgccattgccagtctcacaacacctgcagggtggctgccccggtgctccctgcttaattaaattgagtaaatttcatataaaattcagctgcagatgctgtcagcaccgcagcatcatattattgatttatacttagtattcagtagtattggctgggttattttaagtagccaattaagtgtattttcagtccaacatgaactgcatgggtcacatcttgtatgcgaattatacacgttttatgtaacaaagcaaggtgaatttgaaaggcgaagaaacagttaggg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0348900, RefSeq:Os03g0348900