Os05g0132100

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Revision as of 10:05, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0132100| Description = AMP-dependent synthetase and ligase domain containing protein| Version = NM_001061091.1 GI:115461912 GeneID:4337714| ...")
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Gene Name

Os05g0132100

Description

AMP-dependent synthetase and ligase domain containing protein

Version

NM_001061091.1 GI:115461912 GeneID:4337714

Length

6431 bp

Definition

Oryza sativa Japonica Group Os05g0132100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:1844930..1851360

Sequence Coding Region

1845213..1845275,1845385..1845504,1845718..1845900,1845997..1846136,1846211..1846453
,1847107..1847224,1847345..1847420,1847497..1847563,1847644..1847731
,1847824..1847934,1848075..1848242,1848389..1848483,1848566..1848605
,1848685..1848761,1849050..1849098,1849199..1849255,1849402..1849491
,1849603..1849666,1850528..1850688

Expression

GEO Profiles:Os05g0132100

Genome Context

<gbrowseImage1> name=NC_008398:1844930..1851360 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:1844930..1851360 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagggggggacgaagaaagttttcacagttcaggtggaggatggaaagcccaggaaggacggccggccggcggtagggccagtgttcaggagtgcactgtcaaaggatggattcccgccacttgagcctgacatgaaaacatcatgggacgtgttcagggtcgcagcaggcaagtacccagataatcggatgctcggatggcgtcctgtaaaagatggagtgatagggccatacatatggaaatcatacagggaagtgtatgaagaagtcctgcaagttggatctgctttgcagcagctgggggtgaagccaggttcccggattggaatatatggatcaaactgccctcagtggatagtagcaatgcaggcttgcaatggttacagcttaatctgtgtcccactctacgatacgttaggtgcaggagctgttgacttcattattgaccatgctgaaatcgatgttatctttgttcaggacaagaaaataaaagaaatactgtccgcaaattgcaagtctgctaagagagtgaaaggactggtggcatttacttcgggaacaagcgaagaaatcacaagtgctgatcagattgggatgaagttgtactcgtggaaagatttcttaaaaatgggaaaggaaaatccagcccaaccttgtgctccaaaaccaaatgatacatgcaccatcatgtacacaagtgggacaagtggagagcccaaaggtgtcatgcttagccatgagagtcatgccatatatgtgaaaggtgtggacctcttcatggagcagtttgacgataagatgacaacagatgatgtgtttctttcctttctaccgcttgctcacatccttgaccgcatgatcgaggagtttttctttcacaaaggagcctcagttggctattatcatggggatttgaatgccttgagagatgatctcatggagctaaagccaactctactagttggggtgcctcgagtgtatgaaaaaatttatgaaggtatcttgaaggccttatcagaactcagaccactcagaagattaattttcaatgctctgtataaccgcaaactggcaaacatgaaagcaggctgcacgcacaaaactgcttcaccttttgcagatatgttggctttccgcaaggtcaaagcaaggcttggtggtcgtcttcgcctattaatctcgggtggggctccattaagtaatgagatcgaagagttcttgagagtaaccagctgcgcatactttatccaaggctatggtttaacagaaacactgggacctagcacggtctgttaccctgatgacatgtccctggttggaactgttggcgtggctgctacctatacggaattgcgattggaagaagtgcctgagatgggttacaatccacttggtactccttcccgtggtgaaatatgcgtccgaggaaacttcttcaccggatactataaaaatcctgagctcacgaatgaggtcatggctgatggatggtttcacacaggtgacattggagagatgaactcagatggaatcctgaaggtaattgaccgaaagaaaaatatattcaagttgtcacaaggggagtatgttgcagttgaatacctggagaaagtatatgttttccctccaaccgttgaagatgtctgggtatatggggacagcttcagatcaatgttagtggcagtagttaatccacatgaagagaacaccatgaagtgggcagaatcaaatggctgcaagggttcttttgctgaaatatgcaagtctgaaggccttaaagagcatatcctgaaagagctgcaatctgttgcagcaaagaacaagctacggggatttgagtatgtcaaaggtgtaatattggaccctattccttttgaccttgaaagggatttggtgactgcaacaatgaaaaagaaaagaaacaacatgctaaaatattacaagcctgagattgagaaagtataccaaaaactggaggaacagagggttgccgccaaatcaaagtaa</cdnaseq>

Protein Sequence

<aaseq>MEGGTKKVFTVQVEDGKPRKDGRPAVGPVFRSALSKDGFPPLEP DMKTSWDVFRVAAGKYPDNRMLGWRPVKDGVIGPYIWKSYREVYEEVLQVGSALQQLG VKPGSRIGIYGSNCPQWIVAMQACNGYSLICVPLYDTLGAGAVDFIIDHAEIDVIFVQ DKKIKEILSANCKSAKRVKGLVAFTSGTSEEITSADQIGMKLYSWKDFLKMGKENPAQ PCAPKPNDTCTIMYTSGTSGEPKGVMLSHESHAIYVKGVDLFMEQFDDKMTTDDVFLS FLPLAHILDRMIEEFFFHKGASVGYYHGDLNALRDDLMELKPTLLVGVPRVYEKIYEG ILKALSELRPLRRLIFNALYNRKLANMKAGCTHKTASPFADMLAFRKVKARLGGRLRL LISGGAPLSNEIEEFLRVTSCAYFIQGYGLTETLGPSTVCYPDDMSLVGTVGVAATYT ELRLEEVPEMGYNPLGTPSRGEICVRGNFFTGYYKNPELTNEVMADGWFHTGDIGEMN SDGILKVIDRKKNIFKLSQGEYVAVEYLEKVYVFPPTVEDVWVYGDSFRSMLVAVVNP HEENTMKWAESNGCKGSFAEICKSEGLKEHILKELQSVAAKNKLRGFEYVKGVILDPI PFDLERDLVTATMKKKRNNMLKYYKPEIEKVYQKLEEQRVAAKSK</aaseq>

Gene Sequence

<dnaseqindica>6086..6148#5857..5976#5461..5643#5225..5364#4908..5150#4137..4254#3941..4016#3798..3864#3630..3717#3427..3537#3119..3286#2878..2972#2756..2795#2600..2676#2263..2311#2106..2162#1870..1959#1695..1758#673..833#atcaacagggtgatactgccagcttcttctcaactcgacataagagctccctggcttctctgtaagttccatgccttctctctctctaagccccccttttctgtaagctctagtctcttctgcaagttccctttcaagcaaaatctctctctctctctctctctctctctctctctctctcacggagagtaagagagggagaagaaaactaaagaggaaggtttgggctttcctcttcgttaaagagtactattttcttgaacaggagagtgttgttttactgaccgcattcaagaaattcacgaaaagcttggtcagacacaaatgctttgaatagttccttacaatgatcccgttttctaatcacaaaatgtcagaaatataagtgtgaaacagtcttgggtgagagctttcatcgatgactttctgtctaactcaaatttttctggtgttacatgctttttgttttctcagaaaaaaaaaacaagtaattatcatttcctttcttccttttgagaagttgcaccattatgttcaaacaatctgttttcatcctcttttgtgcttgtgtttgggtctatgcattgatcaattcagtagagcaagaaagttaaagttctgataataatattaccttcattatggtacaaggtaggggggtcactttggtcgatggagggggggacgaagaaagttttcacagttcaggtggaggatggaaagcccaggaaggacggccggccggcggtagggccagtgttcaggagtgcactgtcaaaggatggattcccgccacttgagcctgacatgaaaacatcatgggacgtgttcaggtacagggttggatcaacaacttcacttctttcttctttgtgtttctttcagctctttcacaacatagatctcactgtgataattgccttcttctagttttctccatggtacacatgtgtgaagctgttctgcgagttgaaagaaaagcaaaaaaaaaaaatctgaattgaataccgcagttagttatgttggcaaattgtttttgtctatttggttatatttatatattgaggaaaagtttctgcttttgtggggatgggcataagggaagttttggagttttgcaggaggagacatactcaaggattatgtgttctttttttcttttcttttttttttgccagtaacctataaaattctgcaacggattaattttttctcgtgtactttgacaatcttatttgtcattttgtgccctcctctcttttcaactagttctatataaacccgttttaatttaaaatgaaaatcaatgggtagatagatccaagtatcagagagagacgtagaagcagagctagttaaaaaaaacataccgtgtccagtgtcaacaggcatgtgtacggtcagtcctcaaggagagaacaagtcacacctagttggcaccttagtacataacctgtacgtgtacagagtaacaccaaaagatatgagtataatatttttaaatttcaactagtaatttcatgtaacatataatctactccacatgctaaaaatattggtttcatgcaacaaatgcaggatatgaaatttaaacaacagattatcacaagatacacggaaaagtcaaagtataaaagaatactccacaacttagaaaaatcttagttttcatcctttcacttatcctcctgcagggtcgcagcaggcaagtacccagataatcggatgctcggatggcgtcctgtaaaagatggagtggtatgccaacatatagctgctaagatcatgcttccatatctgctccatgtcttattgtcgttttctaaattcctgatgataaactcctccattgttttctgtaccttacagatagggccatacatatggaaatcatacagggaagtgtatgaagaagtcctgcaagttggatctgctttgcagcagctgggggtgaagccagtaagaacagaaacttaagcaaacttccactccaaatcatagagctagactctctttcattattggaatctgcatattttgaagagagctcgaaacatttacatgagttgtggagacttatgctcctatgcttgatcttatatcagggttcccggattggaatatatggatcaaactgccctcagtggatagtagcaatgcaggtaaactttgtgaagtagggataacctgaaagaaaatttcgattttcaacattattttatcataataagctactataaccccctcaattgaaaaatgcaggcttgcaatggttacagcttaatctgtgtcccactctacgatacgttaggtatgaaaattgcttaactaaaggctcttatcgtaaaacatcagatcgactaatgcaaatctgatgcacgacatttggtcttttgactagaagttgtattactccctctgtcccataatatagcaacctagtatcagatgggacatttcatattacaatgaatctagacaccctcctatctagattcggtatactatgaaatgtccaatctggtattagattgctatatcatgggacggagggagtatccattatccctaatgagtaatgacattccatgaattacaggtgcaggagctgttgacttcattattgaccatgctgaaatcgatgttatctttgttcaggacaagaaaataaaagaagtataatacattcaagttaacatttgttgcatctttttttctgaatatagttttgaccgcgagaactttctatttgcagatactgtccgcaaattgcaagtctgctaagagagtgaaaggtaagcgatggtatataaagggactctgatgtaactatatgttaaatattctaaaagaatccccaccaaaatatgtttacaggactggtggcatttacttcgggaacaagcgaagaaatcacaagtgctgatcagattgggatgaagttgtactcgtggaaagatttcttaaaaatggtaggtccagaattgcacacattcaccgtttgttaacccaaataaaatacctggttaaatttctctggactgctaattttgtggtaatgctagtgatgactacataagtgttgtcttgatagaccaatatttgagttgtgtttcagggaaaggaaaatccagcccaaccttgtgctccaaaaccaaatgatacatgcaccatcatgtacacaagtgggacaagtggagagcccaaaggtgtcatgcttagccatgagagtcatgccatatatgtgaaaggtgtggacctcttcatggagcagtttgacgataaggttgctctttctctcctttgctggatacagcagtctaaataaacttaatgcctgatccaatagatgtttctagttatgcataattattgtattgacctaagttcataatataaacaggacaagtggttttgtgtatgcagatgacaacagatgatgtgtttctttcctttctaccgcttgctcacatccttgaccgcatgatcgaggagtttttctttcacaaaggagcctcagttggctattatcatggggtgagcatttcgagcacatgttccagaatttccattcttgaagtgataatccttaaaatcttaataacatggttgcatttcgtgagggtcaggatttgaatgccttgagagatgatctcatggagctaaagccaactctactagttggggtgcctcgagtgtatgaaaaaatttatgaaggtgggtcaaaataataaaaggttggtattaattaagctaatagattgttaactcatatgtccatttataactggctctaggtatcttgaaggccttatcagaactcagaccactcagaagattaattttcaatgctctgtataaccggtacgttgattagcttcataaatttcttatgacagtaaatatattatgtatgctcactgtaagatttgtgatccagcaaactggcaaacatgaaagcaggctgcacgcacaaaactgcttcaccttttgcagatatgttggctttccgcaaggttttatcttttttccataaacaatctctaagataaaattgtttccaggtcagaaaaagcaatagctgttttactcacaactttcttacctgcctcttcgttgttatttccttgctttaggtcaaagcaaggcttggtggtcgtcttcgcctattaatctcgggtggggctccattaagtaatgagatcgaagagttcttgagagtaaccagctgcgcatactttatccaaggctatggtaatgcatataaatattttccaccaatcaaatttctcctgtatatccaaagaagtaattaattgttattacaaattatttgattctgaaaagtataaaggtagttgctacctgctaaggtctacaagccatagaaaaataactcacacaaattgcctgatagaagagttcaagtatgaattctaattctatctggaacatgaatcagttggcctgatatggaaatatccgtaagagaaataaatacctataaggccagtcagcaggagcattatccagtttgaatttacttgtgggtcagtcagccagattcttatcaagtttgagtctaggtcttacttgttctatcttagttccacaatgtcatctttttcactacaaagtgcaaacactaggtttaagaggattttcaaccaactccaaataagtccccaaggagccagccaaaacacaaccctgtgtcaaagtgttttgatttgttgactgttaataacaagtaaaatgttttgatcatctattttcttcttcacagagacacttaaaaggatctaggattcatatcctcataatatcttgaatataaattgttgagttgtgagataccttttagtctattaaaaggtacaaggtcagactttgtggctttttcacaggtttaacagaaacactgggacctagcacggtctgttaccctgatgacatgtccctggttggaactgttggcgtggctgctacctatacggaattgcgattggaagaagtgcctgagatgggttacaatccacttggtactccttcccgtggtgaaatatgcgtccgaggaaacttcttcaccggatactataaaaatcctgagctcacgaatgaggtcatggctgatggatggtttcacacaggtgagagtcttttttttttgtcaaaaatagaggattgagataggtttaacatcctggcacattctttttctcaggtgacattggagagatgaactcagatggaatcctgaaggtaattgaccgaaagaaaaatatattcaagttgtcacaaggggagtatgttgcagttgaatacctggagaaagtatatgttttccctccaaccgttgaagatgtaagctaaaaatctagtgcatatagcacaagcttatagttcgaggacataatgccctacaattaagtaatactgtcatttctccactctttctaggtctgggtatatggggacagcttcagatcaatgttagtggcagtagttaatccacatgaagagaacaccatgaagtgggcagaatcaaatggctgcaagggttcttttgctgaaatatgcaagtctgaaggccttaaagagcatatcctgaaagagctgcaatctgttgcagcaaagaacaaggtacatcctttatgcaattccacagtggagaaaactgaacatatcacatgtttgatcattctatcccttaaagtatcctaataggctaatactatgttcaacatgattttcttttcgttggaattagaaaaaaggaaacttggaaagtatttttagattcctaatgtttaatcatgtaagatatagtaaccctcattacttgtcaccatgcagctacggggatttgagtatgtcaaaggtgtaatattggaccctattccttttgaccttgaaagggatttggtgactgcaacaatgaaaaagaaaagaaacaacatgctaaaatattacaaggtaatacttgtttctctaacagtatctaattatttgttcggttccttacttgccactgaaattccttgctgctgacgagtagttctaatctgttgttctttgtgcgtagcctgagattgagaaagtataccaaaaactggaggaacagagggttgccgccaaatcaaagtaaagaaatatgttccctttgaacactaaatgaaaagctagaatgccattgtaaatttttcaatttttagataatggatatcgttccggcctctacatgtaaattttcagttgaactttggtactcaagattacatgaatgcaataaaatgtatatcgtgtgatgccttgtgtagctattaccccccttcatctcatcttacatatatggaatatgatgagcactacagaagtttgtgctacaccacatacttcgaagatactgaatgagatatcaggtattgaaa</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0132100, RefSeq:Os05g0132100