Os03g0389700

From RiceWiki
Revision as of 19:36, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os03g0389700

Description

Similar to M-160-u1_1 (Fragment)

Version

NM_001056806.1 GI:115453340 GeneID:4333014

Length

4871 bp

Definition

Oryza sativa Japonica Group Os03g0389700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:16154786..16159656

Sequence Coding Region

16154898..16155482,16155593..16155870,16157030..16157306,16157398..16157640,16159091..16159372

Expression

GEO Profiles:Os03g0389700

Genome Context

<gbrowseImage1> name=NC_008396:16154786..16159656 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:16154786..16159656 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgctcgccaccagctcctcgatggccggtggggcggcggtggttccacgcagcgcgacggcgacgacggcctcggcgttcgtcacgatgaagcggcgcgccacggccgtgcgcgccgtacacgcggcggagccgtcgaagaacccgcccgtcggcgtcccgtccgcggcgaagacgtcgtcgccgtcggtggcggcgccggagaaggcccccgtggcggccgcgcccgcgcctgtggctccggctccggcggccacgaagcaggtggcgccggcgaggtgggcggtggacagctggaggacgaagaaggcgctgcagctgccggagtaccccaacgcggcggagctggaggcggtgctcaagacgatcgaggcgttcccgccgatcgtgttcgccggggaggcgaggcacctggaggagcgcctcgccgacgccgccatgggccgcgccttcctcctccagggcggcgactgcgccgagagcttcaaggagttcaacggcaacaacatccgcgacaccttccgcgtcctcctccagatgtccgccgtcctcaccttcggcggccaaatgcccgtcatcaaggttgggagaatggcggggcaattcgcgaagccgaggtcggaggcgttcgaggagagggacggggtgaagctgccgagctacaggggcgacaacatcaatggcgacgcgttcaacgagaagagccgcatccctgacccgcagaggatggtccgggcctatgcgcagtccgccgccacgctcaacctcctccgcgctttcgccaccggaggatacgccgccatgcagcgcgtgacgcagtggaacctcgatttcacccagcacagcgagcagggcgacaggtaccgtgaattggcacacagggttgatgaagcccttggctttatgtctgctgctgggctaacagtggaccacccgttgatgacaagtactgatttctggacctcacatgagtgccttctcctaccctatgaacaatctctgacccgtcaggactccacaactggtcatttctacgactgctctgcccacatgctatgggtgggcgaacgcactcgccagctcgatggtgctcatgttgagttcctcaggggtgtggccaaccctcttggcatcaaggtgagtgacaaaatgaacccaaccgagttggtgaagctgattgagattttgaacccatcaaacaagcctgggagaattaccatcatcacaaggatgggggcagagaacatgagggtcaagttacctcatcttatccgtgcggtccgccacgctggacaaattgtcacatggattactgatccaatgcacgggaacaccatcaaggctccttgtggtctgaagacacgcccctttgactccattgccgaggtacgagcattcttcgatgtgcatgatcaagaaggaagccacccaggaggtgtccacctcgagatgactgggcagaacgtaaccgagtgcatcggcggatcccgaaccgtcaccttcgatgacctgggtgaccgctaccacacccactgcgacccgaggctgaacgcgtcccagtcgctggagctctccttcatcatcgccgagaggctgaggaggaagaggatccggtcgtcgaagctgaacaacatgttgccgttgccacccttcggtgtctga</cdnaseq>

Protein Sequence

<aaseq>MSLATSSSMAGGAAVVPRSATATTASAFVTMKRRATAVRAVHAA EPSKNPPVGVPSAAKTSSPSVAAPEKAPVAAAPAPVAPAPAATKQVAPARWAVDSWRT KKALQLPEYPNAAELEAVLKTIEAFPPIVFAGEARHLEERLADAAMGRAFLLQGGDCA ESFKEFNGNNIRDTFRVLLQMSAVLTFGGQMPVIKVGRMAGQFAKPRSEAFEERDGVK LPSYRGDNINGDAFNEKSRIPDPQRMVRAYAQSAATLNLLRAFATGGYAAMQRVTQWN LDFTQHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPLMTSTDFWTSHECLLLPYEQS LTRQDSTTGHFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPTELVK LIEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRHAGQIVTWITDPMHGNTIKAP CGLKTRPFDSIAEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGDR YHTHCDPRLNASQSLELSFIIAERLRRKRIRSSKLNNMLPLPPFGV</aaseq>

Gene Sequence

<dnaseqindica>113..697#808..1085#2245..2521#2613..2855#4306..4587#caccttcctcctcaggagacaccacccgccgccgccgcctcctccattaccgagaagaagagaaacctctcttctactgttggatccaactactacctacccgcacgccgcaatgtcgctcgccaccagctcctcgatggccggtggggcggcggtggttccacgcagcgcgacggcgacgacggcctcggcgttcgtcacgatgaagcggcgcgccacggccgtgcgcgccgtacacgcggcggagccgtcgaagaacccgcccgtcggcgtcccgtccgcggcgaagacgtcgtcgccgtcggtggcggcgccggagaaggcccccgtggcggccgcgcccgcgcctgtggctccggctccggcggccacgaagcaggtggcgccggcgaggtgggcggtggacagctggaggacgaagaaggcgctgcagctgccggagtaccccaacgcggcggagctggaggcggtgctcaagacgatcgaggcgttcccgccgatcgtgttcgccggggaggcgaggcacctggaggagcgcctcgccgacgccgccatgggccgcgccttcctcctccagggcggcgactgcgccgagagcttcaaggagttcaacggcaacaacatccgcgacaccttccgcgtcctcctccagatgtccgccgtcctcaccttcggcggccaaatgcccgtcatcaaggtagtactagtacacccgatccgaaaattcccaaaacaaaatccaatcacgcattccctcaattcctttttctacgattcgattcgattcgtgtgtgtatgattgaaaaggttgggagaatggcggggcaattcgcgaagccgaggtcggaggcgttcgaggagagggacggggtgaagctgccgagctacaggggcgacaacatcaatggcgacgcgttcaacgagaagagccgcatccctgacccgcagaggatggtccgggcctatgcgcagtccgccgccacgctcaacctcctccgcgctttcgccaccggaggatacgccgccatgcagcgcgtgacgcagtggaacctcgatttcacccagcacagcgagcagggcgacaggtgagaagagatcttccatgcacttttgacatgggaccacctatatatttatcgacaaattttctactaaaaatttgacagatgtaattatagtacaatcgtagtgtaattacattgtaacttatatataattacactgtaacttgcctgtaactacagtgtaacttgtatataagttcacgtaattttgaatcgttagatctattacaagatttgttctggtgaggaagaaaaaaatcacagcacacatatatgtgaaaggatttgttcccacgatctctattttactgaaataacatgttaccgagagattcttaaaagttacattatagttatagtgtaattacatacaagttacagtgtaattacactacgattgtactgtaattacatccgacaaatttttggaggaaaatttgtcgacaaatatatagcaaattcgtttgacatagcttttggtgattctagtagatgttttgcaacttttgctgcgataaaattggcatcgcgtcgttgtcgaatttaaagggttgttgttcaattgctcccacatacctccctgtcaagataacgtgacaacttggtttgcaaacgattgatgctacagcataatacattcttacgatgtaggttaggattggaaattatgatttatattatttttctttcgggtagggaatccatgagagttggtcatcgaaacatgttatccaaatttctaaatatttaggtgctctatataaagaaattaccagtcttttgtttattgacgtttgataattgatcaataaatttctttgattctgtaaaacaaaggtacgtaattgcaatatttccttgggctaagcagtatagtttaaatggagaaacaagcactggattacatcattctgctactattctagtactgttgtttctataggagaggctttgaaagcattggaccattcatcgtatccattctaactcaagggaagttagattccacttactactgtttggatatgaaattagtcctcctcataattccatcttgctctgtgtcaatctctgttatcatttatcaataacagttgttaaaatgctaaaggcttttggtagtatttggtaagttgtcatgctatccaatgatctgacaattgttggtatgctggtgcaggtaccgtgaattggcacacagggttgatgaagcccttggctttatgtctgctgctgggctaacagtggaccacccgttgatgacaagtactgatttctggacctcacatgagtgccttctcctaccctatgaacaatctctgacccgtcaggactccacaactggtcatttctacgactgctctgcccacatgctatgggtgggcgaacgcactcgccagctcgatggtgctcatgttgagttcctcaggggtgtggccaaccctcttggcatcaaggttgcctttagacccaacttcatatttacagagttaaattcacccaacccttgctgacatagaaaaaacgctcacaaaatatggattgcaggtgagtgacaaaatgaacccaaccgagttggtgaagctgattgagattttgaacccatcaaacaagcctgggagaattaccatcatcacaaggatgggggcagagaacatgagggtcaagttacctcatcttatccgtgcggtccgccacgctggacaaattgtcacatggattactgatccaatgcacgggaacaccatcaaggctccttgtggtctgaagacacgcccctttgactccattctggtaagttctgtttttcgatacaccgtgtctgttttattgtacaattgcatccacaaaatatataaacaattcgaaagaagatttagattttcttgacgttcttagctggtatgctaccctatcaacataaaagaacagaaagaggaacacgttttgggcgtgtactcatgaaaatagaagaattttctggggagcattgtatgagctaactagctgatgcattgtcaaatggcaatgttgatgatgatggtgtagcgtgttatattccactacttgtttcagatgttccagttcagaatccataggggggactgctattgaaaattattcgtttaactagatgatcattagttgtctataataaaaaaggttggtgggtggtcagtgttagctcaaatttgtattccctggggataatctagaccacaaaaagacatactaatggtggagtagaatgttgtgttaggtatagatgctggcacctatcaactatcatatgttgtttcattgcgaaggtggctagtggactagtactgccgtacaatagagaaaagatcttttggtctctatcataggtggtcacaagtggtacatgtcagttaaatggtttttagtgaagtgggtccaatggtatgatagaaattgatctactgaaaccacttcttgatgtgggaactgattggggagtattggaggttgaaatatcttgtcattcaagaatatttgggcgcatggggcatctactgagttttttcctgcaactaatgccatggtgacaatggctactccctccgtccagaatgtaacaaccatcttaggataatgtatctggacatacattatcctagtatgggtctcattccatcctagattgctgcatcctagaatagaggtagtagtgaatagagaaatactatctgtgggtagtgtaagttcaagggcagaggatggtgacatcacaggacttctggacttcatgagtcttcaggatttttaaatcaactgaaaggcattaaaaataatgggtctcttatagtatacattatgccgatagaaaattgcttgtcgcattcaacgaacgatttggtgtaacagtgtacagaccaaaacagtccttgtcaccttaatgttgattatgggatattaggattctattggaagatgctgacaacacaaatctgaaagagcagatgttctgcatgttggaatgacgaaggaaaaaaaatgagatttggtcacaaactataatccaagactcgtcaatatttacttaataagactttagtcgttgaaccgcaagactggcaatagctatccagtgatagatatatctgctcaatgattctcaactgattgtttgacatgtaccttttaaaaatgttgtattctgcattcaggcccatgcaattatcagactgactaatcatgagcttgtaatctatgacaggccgaggtacgagcattcttcgatgtgcatgatcaagaaggaagccacccaggaggtgtccacctcgagatgactgggcagaacgtaaccgagtgcatcggcggatcccgaaccgtcaccttcgatgacctgggtgaccgctaccacacccactgcgacccgaggctgaacgcgtcccagtcgctggagctctccttcatcatcgccgagaggctgaggaggaagaggatccggtcgtcgaagctgaacaacatgttgccgttgccacccttcggtgtctgaatctgaaatgggtaagggaaaccaggggaagacggaggaatgacgaacggggtagataagatagctgcagcaagaactcgacgacgcctattccatttgttggtgggatgctcttggtgaaatcctatattttgcgagcttttttttctgttgtaacttttcagttggtatatatatgctctgtaatatcatgccaggctgaaaggctttgacatttcggtttttctatgtttctatcatggataagagaataaaatgcaagatagaagaaggctttgtgaata</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0389700, RefSeq:Os03g0389700