Os03g0421000

From RiceWiki
Revision as of 19:37, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os03g0421000

Description

Zinc finger, FYVE/PHD-type domain containing protein

Version

NM_001056917.1 GI:115453562 GeneID:4333130

Length

6821 bp

Definition

Oryza sativa Japonica Group Os03g0421000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:18151022..18157842

Sequence Coding Region

18152167..18152255,18152451..18152569,18152686..18152910,18155115..18155229,18155408..18155572
,18155673..18156050,18156140..18156234,18156598..18156683,18157692..18157730

Expression

GEO Profiles:Os03g0421000

Genome Context

<gbrowseImage1> name=NC_008396:18151022..18157842 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:18151022..18157842 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggtcgccgtcgctcgtcctgctgcttccgccgcatccaatgaaatggtttgtgggatatgtggcagcggtcatgaccaagatagaatggcaaaatgtattcggtgcaatgtctatcaacattgttattgcttcccagtggtgacatatgatgttcctgatgaatggtgttgttgtgagtgccaaaacaagtccaattgggaccaaactcctagtcaaggtgggcaaactatcaggaatagagtccatcaagatagcctgaaaattccaaacaagtttgaaaatgccaaagtgaaatacatttcttatgaagaggtgtcattattgaataataatgagagaccaccaaattgtaggtcaaattttcatgtgcgacgtacaaatagtcatgtccgtcctgcatctcctccaaatgcgaaacagtcatctagtaggagtgacaatcgtgcttatagccagttccatcggaaatttccaaatgggcagcagtccccctgtaggagtgacactcaagggccttttctgaaacgaggtgatggtgcaagtcagaaccagacagagattgctggtataaacatgaaacagaaagcacaatcaggtgagatgcttcgtccatgtcatagaagcagagcaattagaggaaaaattgactttcaggttcaaaatgagcagagggaaaagaaggtagttagtgcagataaagtaacaatgaacccccagagtcgggatgatcctagagaaaagagtggatccaatgttacaggtactgatattggacgtggatctgaaatgagtccggacaatgatataggcatgctggtggtcattaattcaagtgtggaatatgcaagacaacctccaccagaaatttgttggacgggatgctttcttgtctccaatggatcaaactgtaatcctgctgattttaaagcttactgcccatcaaaagtgtcgtctaaagttctcaatgtcatcaagagcatgcctagtataatagagttggatatattgcctcgaatggatgaatggccaaaatcttttgagataaatccaccagtttatgaagacattggcctgttcttcttctccactgaacttgaccggaatggaaagagtcaatctcatgtcatggagacgagctgcaattttgttatgagggcatatatcaacaatataaagttgctgatatattcctcagaagtgcttccacctgattcccagtggattgatggagagagctacttatggggtgtctttgtggatcccaagaggaggcataagtctatgccatttggttccatttctgcatga</cdnaseq>

Protein Sequence

<aaseq>MVAVARPAASAASNEMVCGICGSGHDQDRMAKCIRCNVYQHCYC FPVVTYDVPDEWCCCECQNKSNWDQTPSQGGQTIRNRVHQDSLKIPNKFENAKVKYIS YEEVSLLNNNERPPNCRSNFHVRRTNSHVRPASPPNAKQSSSRSDNRAYSQFHRKFPN GQQSPCRSDTQGPFLKRGDGASQNQTEIAGINMKQKAQSGEMLRPCHRSRAIRGKIDF QVQNEQREKKVVSADKVTMNPQSRDDPREKSGSNVTGTDIGRGSEMSPDNDIGMLVVI NSSVEYARQPPPEICWTGCFLVSNGSNCNPADFKAYCPSKVSSKVLNVIKSMPSIIEL DILPRMDEWPKSFEINPPVYEDIGLFFFSTELDRNGKSQSHVMETSCNFVMRAYINNI KLLIYSSEVLPPDSQWIDGESYLWGVFVDPKRRHKSMPFGSISA</aaseq>

Gene Sequence

<dnaseqindica>5588..5676#5274..5392#4933..5157#2614..2728#2271..2435#1793..2170#1609..1703#1160..1245#113..151#cgagtagcgagtagggcttcctccttcttgctgctttcggctgctgcttccgcgccatccatcctagtgaccacatcctccgccaccgccgatccccatccatcgcgcgagcatggtcgccgtcgctcgtcctgctgcttccgccgcatccgttacgcacatcctctttcccatctctctctctctctctctctctttctctacccacgcactttttctttaatttgcgtttgccctagcttcttgttctacaaatttgccttagccttaatgctagtaacagtttgatggttcccaagaaggtttggggggttcaactgaacccccattgtcccatgttagatccgccgctggtgaaccagcagaagaacaatgggaacttggcagttgtagcatttagtgcacagcttacgactccttttagcgcttccaaacattttggcacttgcatatttagctgcacatgttggcacttttgcattttggcatgaggtgcgatctttgttgctgtgacaaattgtaatttataaggtgattttgcatcttgtcctccattagcttagaaacacgctaaaccatggccatctatttcggcatctccctaaaaagtccctcttcacttcaagtcaacttaggatgacctcaaaagaagcctcttttttttcttggtaacatggtatatgggtgaaatgaacttctgtttgtgcattcaatcttccaacattttcagtttctggatgatccatttatcgtccatttcttttgtggacatgcagagtagtctttcggagtttagtagctttagttacttacaagttttgaaaaaaaaaaacaggttgttcagctttgttttatcatttgtttttttttttatttgcgccccaatgctttacgtttcatgaccacagagatactggcgctttcttgaaactatacttacgctgtgctatttgctctatggatttaatttactacggcaaagtcaattgttttatttgcttattgagttgtgtttttatatttatcccatttttttaaatttttttgtgtatgtttatttcacatttacagttttatatctccacaagacagtaacattgcaaaagtgaaaacaaaaatatatgtagcgacatacatgacatttttgtttacactgcagaatgaaatggtttgtgggatatgtggcagcggtcatgaccaagatagaatggcaaaatgtattcggtgcaatgtctatcaacattggtaatcctttcttttcctacactgtctaattttcctctttattgacttgtacatagacatctgcctatatacacctatgtaccaattcattgctagcatgtttatttgtcagaatgcttggagagaaaactgacccataagggaaacagaaatatctgatatgaaatttgtatggttattttaatagagcaagtgacacggacattttatagctggtcctgaatgtaccattttcattttttttacccaacataaaaaacatgtctttatccattagcttttaaagttatttagggaagctcctgcagttggttgttaaacatatattcaaatcactgaaagattttccatctgcttttgaagttattgcttcccagtggtgacatatgatgttcctgatgaatggtgttgttgtgagtgccaaaacaagtccaattgggaccaaactcctagtcaaggtaatatttttttctcatttaaataatacaaaccatctcattttttgagttaatagtgcagatcataattcttgtctgctcatgtgaaggtgggcaaactatcaggaatagagtccatcaagatagcctgaaaattccaaacaagtttgaaaatgccaaagtgaaatacatttcttatgaagaggtgtcattattgaataataatgagagaccaccaaattgtaggtcaaattttcatgtgcgacgtacaaatagtcatgtccgtcctgcatctcctccaaatgcgaaacagtcatctagtaggagtgacaatcgtgcttatagccagttccatcggaaatttccaaatgggcagcagtccccctgtaggagtgacactcaagggccttttctgaaacgaggtgatggtgcaagtcagaaccagacagagattgctggtataaacatgaaacagaaagcacaatcaggtatattgatatacctagtttttctttatctatgaaatattaagctattgcatcaaccagaaaatgacatttacaagaaaacgtaatcaatggaaaacaggtgagatgcttcgtccatgtcatagaagcagagcaattagaggaaaaattgactttcaggttcaaaatgagcagagggaaaagaaggtagttagtgcagataaagtaacaatgaacccccagagtcgggatgatcctagagaaaagagtggatccaatgttacaggtattacacatataaaaagcattttcttgatggattaacattacaattttttatacagtatattctttttgttagcagttcaaaccataattctgaacttaatatatttttgttcaaatctcaaaccaagttttcatgtgttatttatttattatggtctattgtcctgctctagtaggtactgatattggacgtggatctgaaatgagtccggacaatgatataggcatgctggtggtcattaattcaagtgtggaatatgcaagacaacctccaccagaaatttgttggacgtgagtaaaacatgctatatttgtttgtaattattttatttcagcaatctttacctttgttctggttaaaatgtgaactgagcttctgttgtggttcccatagtgtggtcactcacttactaccctaccgctttacaaaactttgcataggtgcacatgtagagccagtgattccattttcattgactgttactctgatgacctacattacgcgcacattcagtcattactggactgcaggtctgccgcagatctgcatctactattggtagtatttagcatgtatcaagttgacattgacgagaaattaaacagtttactacagcaatttctttcctcaccaaattgcagatgtggagttataccttttgaaatataataattgaatagtatgggtgttttatgtggttgcatgctactgtctgtgtagtttcttttcttatgtatatataccatatatgtatggtaggtctgtattcaccattttcagagtaagattcacaatggttttcttttttctggaactaaaaatcgcatctgcatagtcaactttgatatatgtttatacctaagataacaaatgaacagcttcggttcagctagctataccccaatgggactgatttattctttgctgtaagattggcaaaagatccacatgacccacataattcaaaaatgtcagaattagttattgatctattggacataatgtacagtttcattcatagttgcacaataaatgaccattttcattgtaatttcacgatgaaagtttacaaaggaaatcaagggtgtaattagggtaatattttcactctgtaccccttaatgctgtaacaaaattgagttatattgcaccttttttttatgcaagcctatctcttattttctctaggcatgagcatgtgaaacatgcccatgcagatgaacactccttcgtttctcactccatttgtttgagaggtgcaccactacctcttttgaagtaagacctacaatttcaaggttattggttgttgatgttagttttgggtaaattgaaaatttatcagctattcaggagtgtaattaactacatatcattgtatgagtaagcaggaatattgtatggttgaaatattgtcaactgaccattctttccaaattggcatctgtaatcttctcaaaagtaaaagaaacacggagacaatagctcccgtaatcccataaggtaaagaaaaacaagtatcagtaatgcgtctataagtcattgattctgtgtgtttacacccggcaagttcggtcattgatccttcaaaggttcggactgtcttcttccattgtgctgagccaagacgcaaatcgcttctttagctggtggttcagggtagtgagagatgttgaaaaggacttaaagaaagatttcaattcatttgttatacttgtggctttggagatctgggagcataggaatggtagtgtgtttgatggcataagtcctagtgtgatgtctgtagtacaagcagtagcaaatgaaagtgcccttttgtgcttggttggagcttctaagctccggtatttgctcagtaggccgctagtccctaccgagtaagggggtcgttctgaggcttttgtaattgtaagactggtttgagtttagggctggggttccttttctcttccctgtgttttctctactgcttgttcaggaaagaaaaaaggagactatattcatgtcagaacttaaggatcacaaacaaaattggataaatgacaatatcgcataattcagtagtcattttatattcactatttccttctaggctagctgcctgaagacaaaaaaacactaatgcccatttagtagtcagtgtgactttttattactctacgaggtggcatgctaccatgttaaacatctaggtccttgaatataatggatgatttatgttacatgggtgtaacttacaattaatcactgtgtcaagttgattgtttcagtaagagcttatcttactatgttatcctctgtcttaggtttttataatttaggtactttaaatgtttttcatctcttattaccttgtgcagcattgatttcatttgtttaactgctatttcttttgcataggaattttacctcatataatgaatttactttactagagatgatttaattatacataatagagtgaaagtttctgattttcttgtgctcttaggggatgctttcttgtctccaatggatcaaactgtaatcctgctgattttaaagcttactgcccatcaaaagtgtcgtctaaagttctcaatgtcatcaagagcatgcctagtataatagagttggatatattgcctcgaatggatgaatggccaaaatcttttgagataaatccaccagtttatgaagacattggcctgttcttcttctccactgaacttgaccggtagggtttatactggttccattgacaaatacttggtgtttatatgctgtttcatgttcttcctttcttgtcaatacatatatgaatgttgatgcatttatttctcatatttttaggaatggaaagagtcaatctcatgtcatggagacgagctgcaattttgttatgagggcatatatcaacaatataaagttgctgatatattcctcagaagtgcttccacctgattcccagtgttagttttttaccctctattatgatttctacctctacagcaaaacaaaataattcatccttgtaattaatttctcatacttttgtgctcaactaacttttattgtgagtctgcaaaaataatatattttggtttaaaaagataaaatgtaattacagactgatagcgaggttttaatatctaccatggtaacagggattgatggagagagctacttatggggtgtctttgtggatcccaagaggaggcataagtctatgccatttggttccatttctgcatgacctcttgctttccttgggcatagtgaaaggtatatgtgtctgtacaatatgattcatgcgattgatttacttaatgttgtgttaatagctttttctctctttttcttggtttcgctattattttctctgaaaagtttcattcatcacagttaactctttagatttatatgtctcctaagttaaagcgcgtgtagaatattcccattgatattttgagaactactactctactctaaggtatatctttggctagctttgcctagttttactgctgggtaagggggaatcgttgccagggtatcaacagcaaggaaaataggaagtgaggtgcctattttctttatttatgtgatactaagatcctccttagtatcattcatacttattgaatgaacctacgctcacttggggtatgtgggtgtacatccccaccatcaagtcctactggattcacttgggtgcctatttattttatattaatttgatgctgagttcctccttagtatccttcattttttaaagaaacagcaaggaaatccttgttcacatagcgcaaaaccaaaatcaagccaatcaagggtggacaatgagagaccaaacaatatgtcctcgttttgccaacaatttgaatttgagtaatttgatgcgatgaatttgtgagatagtatgtggtagtttattccaaattttagacagtggaagctttattgatatgtggaagacaagatgcggtattctgtataagttataactttggtcattggaacatgttggcatcttttcttcaaatttctgtcggtttgtttgatcatgctcatcttatgtaggtgtggctgactccatggataactgagaggacgcgtttgatctatttgatcacatggctgaagggaggaatcttgaattgatgatttgggaggattccggcttataggacaataaataatcgttgtttggttcagaaattgaaccaccgatctgtaaaactgcatgttagtctcacagattgttggaattacaaccaactatgcactgtttgttatgttgtagaacagatcagccctagtacttttatatacaaataaaatgacataatggatactgaaatttgcaggtagcaaacccatctaaaaaagcatatcgct</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0421000, RefSeq:Os03g0421000