Os05g0141000

From RiceWiki
Revision as of 10:06, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0141000| Description = Conserved hypothetical protein| Version = NM_001061136.2 GI:297603804 GeneID:4337760| Length = 3304 bp| Definition ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0141000

Description

Conserved hypothetical protein

Version

NM_001061136.2 GI:297603804 GeneID:4337760

Length

3304 bp

Definition

Oryza sativa Japonica Group Os05g0141000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:2329618..2332921

Sequence Coding Region

2329618..2329666,2330034..2330482,2330586..2330654,2330840..2330892,2330935..2332921

Expression

GEO Profiles:Os05g0141000

Genome Context

<gbrowseImage1> name=NC_008398:2329618..2332921 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:2329618..2332921 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaagctcaccgcagtacaattcattgacaggtttttgggtggttacgaggatcctgcacagcaaattttcctgcgcgcaccagaagcactaatgaagtacaaaaggacctcaactttgaagggattaagttggtggaggcgcagaggaacacagcagcagcagcaagaacccacaagaaggaccagaggaggaagaaggcacaaagaggagaaaatatggtacctgtgcagcatctatgggtgccaagccttgctcgggatgaccatccttgccgccgtgtggttggccagggtggccgctgtggtcactgtcttagccctatcctggaagcgtctcaagaagcaagactacttgaatcccggggacatcatgaatgaccaaaaccagaacatcacgtggtccctcaacatcttctacagcttggtgtttgcccagggaatcatgttcgtcaccatactgctcaacccactgagctattattttctgttcaatgccgggatcaagtacaaactatttgacccctccggtctcaagataattttgaattacaagaggtgcaattacctggaattcattgccgggaatgtgaaagcaaccttgcaaatgcacctggtcaccttcgccaagaaactagcggtatccaacatggccgatgacaagttacttggtgtcggtgccatggaccgcatcctcaggtcgatggagttcagaagcctagctcttaggaagcttcgagctttcatggaacccgacgagctggggaagctggttaacatgctaggttacgacaagagccacaaaaacaagaccacggaggaggaggatatcagaggccataccgcaagagtggtgctgaaacttagtccagatcttctggttcagagttatcctcagatcctctatgccatatcttcttccctgctcagcacatccaagtccaacaacaagagggtgtgcaagtgcaacatggattctgacttggtctggtttggcctgcgtatcctagacaagctcacggacaacccagaaaactgtaggaaagccaccaacgacgagagcggtggtgatctattgtccaccatcatagacctcaccatcccatgttgtcatggtcatggtcatggccgcagcatgaggagtaacactagtaccatttctgattcttggattgaacaggagattatccctttgcttcaaacagaaaacgagattcctcttcctttcatcgacaagcttgaccaagaaattattgttggcatggcactcaacatcttgagcaagctggtcgctgcaccggatgaggctggggagaaactcagaaaagaaacatcaaagcatgtgcatttcctgaccaacactgggatgatcttggaccatgtccaggcaacaagagtcatatcatgcttagcagtggataaggaaggccgagaatatatcggcaagtttcctgagatcatcaagaaacttaaggattgtctactttccaagacaccatacgtaaatataactaaagtagctgccaagctgttggttctggagtgcactggtgatgagcaattgttaaaccaaatccagcttttcattgaggaaaatcgtaccgtggaagatcaaagcttttcactaccaatttcagccttcattgaagaacttgattttgatcaacttcaccagccatggatatggaattttgtacagagccttgatgtggaagatgcacttttcgcgccacgggtgaatcactctgacgcagctgctaaagcattaattttgctcaccacagaatgtgcgagcaatgttgaagctttcctacaagggatcaataaagaagagttgaacaagatagtgaatgcactctcttctgaagatggagacaaagagaagagaagggcgctggcacaatttgaaggacgacgtaatctggacccagaaacattgcgcagagtcaaaaaaataatattggctgagggtgaagaacaggcaacaggaccaaaagaatttgatgagtacatgaaattgatagatgcagcactgccaaaggtgctcaaagcagtcgtagatgcagtggcaactttggaggatccatcatcagcagaaaatctggaccatgtgaaggatgacatgtggatcaaacaaggcaaagtactagagagctttataggcctcgcagtgcagatttgtaggtccccgaacaaaagaagtgatttctccactgcactgaaatatgccaatcttactgcggacacattgatcaagaagcttaagaagatattagaagtgtacatgtctccaagtactgattttccatgcataagggtatccacacttgagttaattacttggatggtcgaagaaaacaacagctactgggaaatactcctacaatgtggagtatatgaggaactgaatgaagtggcaaggactgctagaaaacttgagagcttcaagctgtttcactgcggtatcgggattcctacggaaagaactatcgaatgcatctcttccctcgcaactaaattacaagaaaagcttaagaaaatccccgatttcgaaagaagataccgctatggagaacatgcaagccgcatatctgttttaattgcttaa</cdnaseq>

Protein Sequence

<aaseq>MKLTAVQFIDRFLGGYEDPAQQIFLRAPEALMKYKRTSTLKGLS WWRRRGTQQQQQEPTRRTRGGRRHKEEKIWYLCSIYGCQALLGMTILAAVWLARVAAV VTVLALSWKRLKKQDYLNPGDIMNDQNQNITWSLNIFYSLVFAQGIMFVTILLNPLSY YFLFNAGIKYKLFDPSGLKIILNYKRCNYLEFIAGNVKATLQMHLVTFAKKLAVSNMA DDKLLGVGAMDRILRSMEFRSLALRKLRAFMEPDELGKLVNMLGYDKSHKNKTTEEED IRGHTARVVLKLSPDLLVQSYPQILYAISSSLLSTSKSNNKRVCKCNMDSDLVWFGLR ILDKLTDNPENCRKATNDESGGDLLSTIIDLTIPCCHGHGHGRSMRSNTSTISDSWIE QEIIPLLQTENEIPLPFIDKLDQEIIVGMALNILSKLVAAPDEAGEKLRKETSKHVHF LTNTGMILDHVQATRVISCLAVDKEGREYIGKFPEIIKKLKDCLLSKTPYVNITKVAA KLLVLECTGDEQLLNQIQLFIEENRTVEDQSFSLPISAFIEELDFDQLHQPWIWNFVQ SLDVEDALFAPRVNHSDAAAKALILLTTECASNVEAFLQGINKEELNKIVNALSSEDG DKEKRRALAQFEGRRNLDPETLRRVKKIILAEGEEQATGPKEFDEYMKLIDAALPKVL KAVVDAVATLEDPSSAENLDHVKDDMWIKQGKVLESFIGLAVQICRSPNKRSDFSTAL KYANLTADTLIKKLKKILEVYMSPSTDFPCIRVSTLELITWMVEENNSYWEILLQCGV YEELNEVARTARKLESFKLFHCGIGIPTERTIECISSLATKLQEKLKKIPDFERRYRY GEHASRISVLIA</aaseq>

Gene Sequence

<dnaseqindica>3256..3304#2440..2888#2268..2336#2030..2082#1..1987#atgaagctcaccgcagtacaattcattgacaggtttttgggtggttacgaggatcctgcacagcaaattttcctgcgcgcaccagaagcactaatgaagtacaaaaggacctcaactttgaagggattaagttggtggaggcgcagaggaacacagcagcagcagcaagaacccacaagaaggaccagaggaggaagaaggcacaaagaggagaaaatatggtacctgtgcagcatctatgggtgccaagccttgctcgggatgaccatccttgccgccgtgtggttggccagggtggccgctgtggtcactgtcttagccctatcctggaagcgtctcaagaagcaagactacttgaatcccggggacatcatgaatgaccaaaaccagaacatcacgtggtccctcaacatcttctacagcttggtgtttgcccagggaatcatgttcgtcaccatactgctcaacccactgagctattattttctgttcaatgccgggatcaagtacaaactatttgacccctccggtctcaagataattttgaattacaagaggtgcaattacctggaattcattgccgggaatgtgaaagcaaccttgcaaatgcacctggtcaccttcgccaagaaactagcggtatccaacatggccgatgacaagttacttggtgtcggtgccatggaccgcatcctcaggtcgatggagttcagaagcctagctcttaggaagcttcgagctttcatggaacccgacgagctggggaagctggttaacatgctaggttacgacaagagccacaaaaacaagaccacggaggaggaggatatcagaggccataccgcaagagtggtgctgaaacttagtccagatcttctggttcagagttatcctcagatcctctatgccatatcttcttccctgctcagcacatccaagtccaacaacaagagggtgtgcaagtgcaacatggattctgacttggtctggtttggcctgcgtatcctagacaagctcacggacaacccagaaaactgtaggaaagccaccaacgacgagagcggtggtgatctattgtccaccatcatagacctcaccatcccatgttgtcatggtcatggtcatggccgcagcatgaggagtaacactagtaccatttctgattcttggattgaacaggagattatccctttgcttcaaacagaaaacgagattcctcttcctttcatcgacaagcttgaccaagaaattattgttggcatggcactcaacatcttgagcaagctggtcgctgcaccggatgaggctggggagaaactcagaaaagaaacatcaaagcatgtgcatttcctgaccaacactgggatgatcttggaccatgtccaggcaacaagagtcatatcatgcttagcagtggataaggaaggccgagaatatatcggcaagtttcctgagatcatcaagaaacttaaggattgtctactttccaagacaccatacgtaaatataactaaagtagctgccaagctgttggttctggagtgcactggtgatgagcaattgttaaaccaaatccagcttttcattgaggaaaatcgtaccgtggaagatcaaagcttttcactaccaatttcagccttcattgaagaacttgattttgatcaacttcaccagccatggatatggaattttgtacagagccttgatgtggaagatgcacttttcgcgccacgggtgaatcactctgacgcagctgctaaagcattaattttgctcaccacagaatgtgcgagcaatgttgaagctttcctacaagggatcaataaagaagagttgaacaagatagtgaatgcactctcttctgaagatggagacaaagagaagagaagggcgctggcacaatttgaaggacgacgtaatctggacccagaaacattgcgcagagtcaaaaaaataatattggctgagggtgaagaacaggcaacaggtatgcatgcaaaactcctgcagaatttgcgtgcctattcaggaccaaaagaatttgatgagtacatgaaattgatagatgcagcactgccaaaggtaatttcgttttagttctagccattctctttggatgtagtctactaaatatatatattatgtatatatgcataggctcagaattaacgcatcatcaccattttccttcaccgcaactatattcattgactaaagcaatatggtaacaacgaccaatatatctctctgaaaattgaattatataggtgctcaaagcagtcgtagatgcagtggcaactttggaggatccatcatcagcagaaaatctggaccatgtaagaaaatagtagttgttttcccttacctcctgactacttcatttgcacctagtctaacttcccaattcacaaacaattttctttggatatatatatgtaggtgaaggatgacatgtggatcaaacaaggcaaagtactagagagctttataggcctcgcagtgcagatttgtaggtccccgaacaaaagaagtgatttctccactgcactgaaatatgccaatcttactgcggacacattgatcaagaagcttaagaagatattagaagtgtacatgtctccaagtactgattttccatgcataagggtatccacacttgagttaattacttggatggtcgaagaaaacaacagctactgggaaatactcctacaatgtggagtatatgaggaactgaatgaagtggcaaggactgctagaaaacttgagagcttcaagctgtttcactgcggtatcgggattcctacggaaagaactatcgaatgcatctcttccctcgcaactaaattacaagaaaagcttaagaaaatccccgatttcgaaagaaggtattgtttttgcccttttaggcaaaatgtcagttcaaacatacttagactcctcaaggagaattcgtaaatccaaacttaaatgtttgtctttaatctgccaattgtcaagggctctgccatgtactccctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgttaatgaatctagacatatatatctatctagattcattaacaacaatatgaatgtgggaaatgttagaatgacttacattatgaaacggaggaagtagtaaacagtaaaagacttaatatgatgtgtcaaatttcccaagctggctatgatttcatctaaaatgactttcttacttgttcttacagataccgctatggagaacatgcaagccgcatatctgttttaattgcttaa</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0141000, RefSeq:Os05g0141000