Os05g0145600

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Revision as of 10:06, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0145600| Description = Pentatricopeptide repeat containing protein| Version = NM_001061168.1 GI:115462066 GeneID:4337794| Length = 6124 bp|...")
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Gene Name

Os05g0145600

Description

Pentatricopeptide repeat containing protein

Version

NM_001061168.1 GI:115462066 GeneID:4337794

Length

6124 bp

Definition

Oryza sativa Japonica Group Os05g0145600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:2596222..2602345

Sequence Coding Region

2596680..2596787,2597048..2597149,2597310..2597387,2597467..2597532,2598328..2598418
,2598857..2598933,2599348..2599557,2599645..2599762,2600267..2600364
,2600480..2600545,2600632..2600791,2601961..2602117,2602203..2602236

Expression

GEO Profiles:Os05g0145600

Genome Context

<gbrowseImage1> name=NC_008398:2596222..2602345 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:2596222..2602345 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagcctcctcagcaactccctcctgctccaagggcggttgcggcatgcggcggcttcagcggtggcggcggcggcgatggggcggcgcggggtggcgacgtcgacggaggagtacaatcgccggaactacgccaacaacatctccgagtacaataccgtcttcgggtccctcaccgcgcagcgcaggcactacctattgcgtgatgcttatgatgacatgatgcttgatggggttcagcctgtgcgggacacattccacaatctcatagtcggtgccatgaaaggcagccggctacaagatgcattctactttcgtgatcagatgaaagaaatgggtttgcagcctgatgttaacctttacaacttcttgatctccacttgtgggaaaagcaaaaactcagatgcagcgatcatgcttttagaagaaatgaaggcacatggcgttaagttgaaaggtgaaacatacacttgtcttttgaatgcacttgcagcaacagggcgtacagatcaagtgtatgctatagttcgtgatatgaccgctgctgggcttggattaaacaagttttgttatgctggactaataaccgcattcaagaacaaggcaccaaccactgaggagactatgacaaaaattgtcgagtttgttcagcagtcaaaaggttggaaaaatgttgaaagagtatcaaaagatagctccgaaaatataatgatgaatgtgtcagaggaagagctttataacctgccaacagctgaatatgtacatagacaagcatttgtctataaacagatgacaatttatcatgttgctatccatgcttgtgcagacctgaagagcaaagagacacttgaagtacttcttgacatgcttattaaagatggatttacttatgatgccttcattgcgatgcaagctatgaggtgttatcttcaatgtggagatattgattccgccgttaagatttttgaagagtacacaagctcaaaatccccgcctgcagagttgtatgtgacacttgctgagggagctatgattgggcatacaccaagaggaatgcaacttgctcaagaaaccatagagaagatgacttcgagaaatttcttcttaaacgcaaggatgggaactgatcttctacttgcagcttcaggtgaaaagactggtggatatacaatagcaaattatgtctgggatctcatgcaaaaccgcagaatcactccatcacttcctgctgttgaagcatactacaagggtttgaaggaacgtgaaattccttctgatgatccacggctcatgaatgttagccgtgtcttggacaatctgagcattcgttttggaccaaggagaaacagtaacgcacaggcataa</cdnaseq>

Protein Sequence

<aaseq>MSLLSNSLLLQGRLRHAAASAVAAAAMGRRGVATSTEEYNRRNY ANNISEYNTVFGSLTAQRRHYLLRDAYDDMMLDGVQPVRDTFHNLIVGAMKGSRLQDA FYFRDQMKEMGLQPDVNLYNFLISTCGKSKNSDAAIMLLEEMKAHGVKLKGETYTCLL NALAATGRTDQVYAIVRDMTAAGLGLNKFCYAGLITAFKNKAPTTEETMTKIVEFVQQ SKGWKNVERVSKDSSENIMMNVSEEELYNLPTAEYVHRQAFVYKQMTIYHVAIHACAD LKSKETLEVLLDMLIKDGFTYDAFIAMQAMRCYLQCGDIDSAVKIFEEYTSSKSPPAE LYVTLAEGAMIGHTPRGMQLAQETIEKMTSRNFFLNARMGTDLLLAASGEKTGGYTIA NYVWDLMQNRRITPSLPAVEAYYKGLKEREIPSDDPRLMNVSRVLDNLSIRFGPRRNS NAQA</aaseq>

Gene Sequence

<dnaseqindica>5559..5666#5197..5298#4959..5036#4814..4879#3928..4018#3413..3489#2789..2998#2584..2701#1982..2079#1801..1866#1555..1714#229..385#110..143#acgagttaaaaccctcttcctctctctctctcgcttcgtcttcctcctccacacgaagcggcagcgccaccaccacctccgccgctctctccactgcgccgccggcgccatgagcctcctcagcaactccctcctgctccaaggtacacccgccctccatttctcctagggccgagcccctatgcgtggtccaagatctccttgacctttttggatctggctgtgcagggcggttgcggcatgcggcggcttcagcggtggcggcggcggcgatggggcggcgcggggtggcgacgtcgacggaggagtacaatcgccggaactacgccaacaacatctccgagtacaataccgtcttcgggtccctcaccgcgcagcgcaggcatgtctctcggttcttgcatgccaactgttcgacgcaatgccgagcgctggcatgcttgttgagatggcttagttgtgattattttttcctgcttcctcgatgatttagtttgtacaagagcacaacgctcgctagcctaaatgtggccattctgcaaccgggcatgctaccggccagaatgccagatgaacacaattatacatggtgtcgattgtagaccattgtactattttgcacacaaggatttttagtgctgtacaggaagcattcttgtttctggtggctgtctttgtgctgaatgtaggttgattcactcgtctgtatttcctccagtctgtctcaatacaatacgccagtgagcatgggcagctctagtgccacagtttgaccctaagtacttatcactgagcctaggaagctagagtgccttagtttcacctgaattacttgcaaaccatctaagttcagaagttagtacacatgtttggtttgtcaagtttgtagctttcttgaccaaaatatgcacattttataatgtcaacttccatcttgattttataagatatatcatatatgctcaatgcttttttcttatacaatactccctccttcccaaattgattattatataatggaattcaaaatttctcaaattgatcatcatataactacatgaacacagatttcatcagaatacatttaatgcaacatgggagaatgtgtgcatgctaaggagtaattgacatggtgttttaatcgatgcatgcattgtgggagaatgtgtgcatgatgtcttcattgatgtgttttaaattataaattatccttggttttggtgcataaacatatatgatgatcaatttgggaaggagggagtatttatcagtacatttatgcaaatggtgtatttggcaaacactttttcaccttatgtttgccacattaagctatatcttttggttgatagccattcttgagaatttatttatgtagcttggactaccaaccatttgatgccctatgttgatacgtccatgtgttttgttctgcatgattgtgccattgtgagtctttgttttgtcggtagcagttccatggtagtaacctctgtttgcttaggctctattctttatcaagtctgaacagaacttttgcattgtttttaggcactacctattgcgtgatgcttatgatgacatgatgcttgatggggttcagcctgtgcgggacacattccacaatctcatagtcggtgccatgaaaggcagccggctacaagatgcattctactttcgtgatcagatgaaagaaatgggtttgcagcctgatgttagaccgtgtcttctttgaattaatttcatctcttgtttagggttttgtgagattggttgggctaaaggcattatattttgtaggttaacctttacaacttcttgatctccacttgtgggaaaagcaaaaactcagatgcagcgatcatggttagacaataattgagtttttgttattgtggtcatgtggtgctgttctcctatttggaatgtattatctttgttcctatgctcactaatgctttcatcttgctacctgtaaaagcttttagaagaaatgaaggcacatggcgttaagttgaaaggtgaaacatacacttgtcttttgaatgcacttgcagcaacagggcgtacagatcaagtgtaagggttcctcaacattcttttgctcaaacagtagatcacggcaacaactgaggctgaaatataaaatcgtttggtctatacacattgtggttcactatgcatagcatgatttcatgaagtactgaataccatctagcaatgaataagccaaggcctaattgacattaataactcattacctttgttatttctgttcacttcatccgaactgctaatcactctattgaatctgcatggatctgcctgattgagcatgtgaggaaaaaatgtagaaagatattacaaaatgtaaaatcatatataacttatgttttgaatttaagaatattggaattgttagtaccaatgtaaccgatctggaggttgcagtacaattaacttgctgttacttccatgccaatacatccatattaatagaaatgttacttaacgtactgcagtttctactttaaccatttacccttttgtgagaaacttctcataaatattttgttttgacaggtatgctatagttcgtgatatgaccgctgctgggcttggattaaacaagttttgttatgctggactaataaccgcattcaagaacaaggcaccaaccactgaggagactatgacaaaagtatgttttgcatacatgggcagttattagatggatgtatttaacatgttcaaacagttaatttgaactacaatttttttctatcagattgtcgagtttgttcagcagtcaaaaggttggaaaaatgttgaaagagtatcaaaagatagctccgaaaatataatgatgaatgtgtcagaggaagagctttataacctgccaacagctgaatatgtacatagacaagcatttgtctataaacagatgacaatttatcatgttgctatccatgcttgtgcagacctgaagagcaaagaggtgtgcttattttgcctttgtgttaccttttttgcattaactaatactccctccatccaacaatacaagcatttgaattttgtcctagaatataagcattcctacactacttgtcacatgaatcacctctcagttctcaatctctaatacaaatttcttcctatattacacccccccccaaccatctcccatcaaatgaggggcactaaaatcttttctcctcaaccttatttgctaaacaacctagaaatgcttatattgttggacggagtgagttcgtggttgctgttcagcagcctcgacagttgacataaatgtatgctttcgcgtaccctactgttgcccaaaatcttcaacattgagttatatgtcctagttccatgaagaagttcaatttactttgctattctgcagacacttgaagtacttcttgacatgcttattaaagatggatttacttatgatgccttcattgcgatgcaagctatgaggtaatctattctatggatgtttaccatttcctgatataagttttagtgcctgaacaatatgatgtagtgatctaattgcattgttagttgttccagaggtgtacagtatagaagtatgtcccactatgccctcattattattgttaaagtatgaaagaacattcatctttaaaaaatatctggtgtttctctgctctctaaattttcagtcttgagtattatatttgctgaaaaccttcttgagtacacatatattataactgttcatatcaaaggatcattgctttttttaatggattccttttgggaatggtatattttctattttttgggcatgtctgtccttgttttgctaccccttcatgtgtcctgttttattgtactaccaactagtttctgattctagctgctattttgttattcttttaactgaaaaaggtgttatcttcaatgtggagatattgattccgccgttaagatttttgaagagtacacaagctcaaaatccccgcctgcagagttgtatgtggtgagtaaaacccttagtaagaagggaaacttttgttgaggaagtgattttttttttggcagggaaaaaagttaagtacaaaaaaaatgaaacaagtttgagatcattaatcattaaccataagtgctaactgtattctgaaagtacaaaaattatgtttagtacctaatccctctacagagtaaaaaaaagaccgagtcgataagatagtgtagtttgcacgattctactattcttatgtcataaaaaaaaaacaagtttgagatcaatcactgttaagttcacacgattagcttacctcttgtgttcactacatcagttcctagtggtttcatgaaatttaaaaatcagtttgatcattgtcttgtcaaaagtgatactgttacttttttggttgacaagcaacataggtttggaactttggattcctctacataatttacaattctagtgaataacaggtttactatacagtatacactgctgaacctactctggttttgtgccgtttctaagcttttgaactgaaacacaaattaaggcactataccatttcttacattttagttactatataggatttatactatctgctttcttgcttattagtcacagtagcattgtcttttacagcactgctaaataaataaataacttttaccatggtggagctcattgaggatctacatggaaatcataaaaaagtagtccatttcagttgacactctatctcttgtttcgaactttgtgctctcatatatatttgtgtgtattctatgcataattggcatgcagacacttgctgagggagctatgattgggcatacaccaagaggaatgcaacttgctcaagaaaccatagtaatttttccttctgttttggttttctagtttctccaacttagaaattcaattttttacatctcagaatatttttcaggagaagatgacttcgagaaatttcttcttaaacgcaaggatgggaactgatcttctacttgcagcttcaggtgaaaaggtaagtatcacagctaccaccctcctgtacttgcaagtcctacaaatgctaatgcatctatttgaagaaaacacaattattttacttatgtcatattcttgaaatgaatccaaatagcttcccaaatcacttacggttgaaactctgtggattctttcagactggtggatatacaatagcaaattatgtctgggatctcatgcaaaaccgcagaatcactccatcacttcctgctgttgaagcatactacaagggtttgaaggtaagctcagattttgcaatattgtggctagtatgtttaattcaccctagaatcacccatgatattgtttccttatattgcattgagtaaattcattagctgcgtaccgtcctgatttttttttttgaaatcattggatatttacatatcatagtatgctgacctaaagtcactgttataaactactagtatatggagttttattcatgtttctctctttttattctaattacatttcatctcccttcttttcaaatcaggaacgtgaaattccttctgatgatccacggctcatgaatgttagccgtgtcttggacaatctgagcattcgttttggaccaaggagaaacagtaacgcacaggcataatgtcgtcgtcactaatccaatgcgagttagattttgtgttaataaaactgctggatacatcatcaatatgttagcacttgagaagatcaacgaactgaaattaggatagcacaaagcgaatatgaaaccatcaagagatgaaaccatcaagcatgatgacaaggatcagggtacccaagtccaacctgaaggattttcatccgcatcgcggaaaatctgattctcaagtttcttttaacttttgtaaacttactgttgtcggaatgttacttatcacactggtttagagagtttattctgctgagtaatttgacattagatgtccattccattgctacctttcaggcttcagctgcgagtgtatctgaatggtcatttctcagtttgacaaataattgttgtgagtttaacttcaaagaatcactggaagaattttatgcaaaggaatattatgactc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0145600, RefSeq:Os05g0145600