Os05g0150900

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Revision as of 10:07, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0150900| Description = Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA ligase) (HisRS)| Version = NM_001061204.1 GI:115462138 GeneID...")
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Gene Name

Os05g0150900

Description

Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA ligase) (HisRS)

Version

NM_001061204.1 GI:115462138 GeneID:4337830

Length

3834 bp

Definition

Oryza sativa Japonica Group Os05g0150900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:2906195..2910028

Sequence Coding Region

2906395..2906694,2906771..2906911,2907250..2907531,2907619..2908011,2908238..2908417
,2908591..2909557,2909849..2909952

Expression

GEO Profiles:Os05g0150900

Genome Context

<gbrowseImage1> name=NC_008398:2906195..2910028 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:2906195..2910028 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgcctcccgccgccgccgccgccgtgacgctcggtggcaagggcgccgcgctcacccccgccgccgtctacgccctctcccacggcctcgccgaccccgcgatcgactgctgcgcgtccccgctcgtccgcgtcgccgacgccgtcgccgcgctctcctgcgaggccgcgcgcggggacgtcgcggcctttgatgtgccgacctctggtgatggtctctccgccaaggacgaggctgatgtcgccgccgatgtcaagatgctcctcttcgggtccaagctcgtcggcgcagccggtggcgccgatgccgcgtctttcactaaggtgcccaccgtgaatggaatcttccgcgaggcagtgcgcgcgctgcacgcgagggtgcgtatcgagctcaacgctccagtgaagttgggaaagagggacgctgtccaaaccggtgagggaaaggaggaggcattggttgctctggcaacgcaactcgcgaggccggtacaggcaatgctcaagcttagcgttgcgcgggcaaggctttgtgttgcgagaattgatgatgctgagctccggaagaagcttactgatggtgttgaaatcgatgatttgaaggggatgcttggcaaggtcacgattgattcggatgctgtatctgttttgcggggtgtgtacaactccctgctcaagttcagggatatccttgcatgggaagcagctgttgccatggcggtgatcgaaatggatagttcaattgagaagccacaagcttgtgaggagaatgaggcgggcagttcaactgaaaatccgcatgctagtggagagaaaccaaaaggtgacaagaagagcaagaagaagaaaactttggggaagggtacttctgctgtactgatgttgcttagggaccttgtgaccaacggaaaggaggttctttcggtgaattctgcactacttgcagagtggggaaccgagctctcactgttgtttgatccaaagtgtcccagattggtgtcccttgtggacaaggtgaaggagattgttgagaccaatgaagtgaggagattgcctaaaattcccaagggaacacgtgactttgggaaagagcaaatggccataagggagcatgccttctcaataataacaggtgtattcaagatgcacggtgccgtttcacttgatacacctgtatttgagctgagagaaacacttatgggcaaatatggtgaagactcaaagttgatttatgaccttgctgatcagggtggagagctttgctctttgcggtatgatctgactgttccatttgcccgatatgttgctatgaataacataagttcattgaagagataccagatagctaaagtatacaggagagataacccgtccaagggaagatatcgagaattctaccaatgcgactttgacatagctggagtatatgaaacaatggaaccagattttgaagttatcaaagttttaactgagttgttggatcagttggatataggcacgtatgagataaaactaaaccacagaaagttgcttgatggaatgttagagatctgtggtgtgcctcctgaaaagttcagaacggtttgctcaagcattgacaagctagacaagcaaacatttgaacaagtgaaaaaggaactggtggacgagaagggcatatctaatgaaactgcggataagattggtgatttagtgaaaactaggggaccaccgctggaagttttgctggaattgagaaaggaaggtagcaagtttatggggaacgctgggtctgttactgcactaaatgagctggagatactattcaaagctctagataaagcaaatgcaataggcaagattgtttttgatttaagccttgctagaggccttgattactacactggtgtgatatatgaagctgtgttcaagggcaccactcaggttggctccattgctgctggaggcaggtatgacaaccttgttggtatgtttagtgggaagcaagtccctgccgttggtgttagccttggaatagaaagagttttcgcaatcatggagcaacaggagatggaaaagaatcagatccgggccaccgagacggaggtattggtgtcgattatcggcaaggacctcatattggccgctgagcttgttagtgaactgtggaatgctgggataaaggcagagttcaaactcactactaggatacagaaccacttgaagtacgcgacgcaatctggcattccgtggatggtgctggttggtgagtctgaaataagcagtggaaaggtgaagctgaagaacttggcagccagccaggaagaggaggttgacaggacagagtttgctcaggtgttgaaacagaaattgagaaacccatag</cdnaseq>

Protein Sequence

<aaseq>MAPPAAAAAVTLGGKGAALTPAAVYALSHGLADPAIDCCASPLV RVADAVAALSCEAARGDVAAFDVPTSGDGLSAKDEADVAADVKMLLFGSKLVGAAGGA DAASFTKVPTVNGIFREAVRALHARVRIELNAPVKLGKRDAVQTGEGKEEALVALATQ LARPVQAMLKLSVARARLCVARIDDAELRKKLTDGVEIDDLKGMLGKVTIDSDAVSVL RGVYNSLLKFRDILAWEAAVAMAVIEMDSSIEKPQACEENEAGSSTENPHASGEKPKG DKKSKKKKTLGKGTSAVLMLLRDLVTNGKEVLSVNSALLAEWGTELSLLFDPKCPRLV SLVDKVKEIVETNEVRRLPKIPKGTRDFGKEQMAIREHAFSIITGVFKMHGAVSLDTP VFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNNISSLKRYQIA KVYRRDNPSKGRYREFYQCDFDIAGVYETMEPDFEVIKVLTELLDQLDIGTYEIKLNH RKLLDGMLEICGVPPEKFRTVCSSIDKLDKQTFEQVKKELVDEKGISNETADKIGDLV KTRGPPLEVLLELRKEGSKFMGNAGSVTALNELEILFKALDKANAIGKIVFDLSLARG LDYYTGVIYEAVFKGTTQVGSIAAGGRYDNLVGMFSGKQVPAVGVSLGIERVFAIMEQ QEMEKNQIRATETEVLVSIIGKDLILAAELVSELWNAGIKAEFKLTTRIQNHLKYATQ SGIPWMVLVGESEISSGKVKLKNLAASQEEEVDRTEFAQVLKQKLRNP</aaseq>

Gene Sequence

<dnaseqindica>3335..3634#3118..3258#2498..2779#2018..2410#1612..1791#472..1438#77..180#attcatccatctgaagcagacgcctttgctttcctcctgctctagggttttgcgtctcgcgccggagatctcaccaatggcgcctcccgccgccgccgccgccgtgacgctcggtggcaagggcgccgcgctcacccccgccgccgtctacgccctctcccacggcctcgccgaccccgccatcgacccatccgcgctccagaggctctccacgcgcggcccctcgccgcaggacacccccgcgtcgctccgcggcctcgccttgtcgccgccggagtcacgcgccgccgcggcggtgctgctcaacaagctcctggtcaccgcgggggactcctctgccctcgtgaccgccgcgacggccaccggcctcgctgggtcgctcgacctcgccgccgcgctgcccccggcctcccgcgacgaggccgcagtcgctgccgcctccgcgcccgtggccgtcgcgctcgccgccgcgatcgactgctgcgcgtccccgctcgtccgcgtcgccgacgccgtcgccgcgctctcctgcgaggccgcgcgcggggacgtcgcggcctttgatgtgccgacctctggtgatggtctctccgccaaggacgaggctgatgtcgccgccgatgtcaagatgctcctcttcgggtccaagctcgtcggcgcagccggtggcgccgatgccgcgtctttcactaaggtgcccaccgtgaatggaatcttccgcgaggcagtgcgcgcgctgcacgcgagggtgcgtatcgagctcaacgctccagtgaagttgggaaagagggacgctgtccaaaccggtgagggaaaggaggaggcattggttgctctggcaacgcaactcgcgaggccggtacaggcaatgctcaagcttagcgttgcgcgggcaaggctttgtgttgcgagaattgatgatgctgagctccggaagaagcttactgatggtgttgaaatcgatgatttgaaggggatgcttggcaaggtcacgattgattcggatgctgtatctgttttgcggggtgtgtacaactccctgctcaagttcagggatatccttgcatgggaagcagctgttgccatggcggtgatcgaaatggatagttcaattgagaagccacaagcttgtgaggagaatgaggcgggcagttcaactgaaaatccgcatgctagtggagagaaaccaaaaggtgacaagaagagcaagaagaagaaaactttggggaagggtacttctgctgtactgatgttgcttagggaccttgtgaccaacggaaaggaggttctttcggtgaattctgcactacttgcagagtggggaaccgagctctcactgttgtttgatccaaagtgtcccagattggtgtcccttgtggacaaggtgaaggagattgttgagaccaatgaagtgaggagattgcctaaaattcccaaggtaagaattatgtaatttgcataaggtgttccatttacatttccttgtttggcttaatctctatgctccaattgcttgaaataaggtttcagaagcatctttttagccagagtgccagactggtatgatttcacccttttacgatgcctgatgcttttctttaatcttgttagggaacacgtgactttgggaaagagcaaatggccataagggagcatgccttctcaataataacaggtgtattcaagatgcacggtgccgtttcacttgatacacctgtatttgagctgagagaaacacttatgggcaaatatggtgaagactcaaagttgatttatgaccttgctgatcaggtattattttcagtcccgctgtacactttaggtcggtaggtgggttaaattttgcactgagcctcaatttatgctggtttttgacttattttcataacattcttgatttgatcagtatttgtgggcatgctacattcagctgctcgattattcatttctttgcattattttccatagcttgtgtgctcacagtcatgatttgatctttacaccaaataatctgcagggtggagagctttgctctttgcggtatgatctgactgttccatttgcccgatatgttgctatgaataacataagttcattgaagagataccagatagctaaagtatacaggagagataacccgtccaagggaagatatcgagaattctaccaatgcgactttgacatagctggagtatatgaaacaatggaaccagattttgaagttatcaaagttttaactgagttgttggatcagttggatataggcacgtatgagataaaactaaaccacagaaagttgcttgatggaatgttagagatctgtggtgtgcctcctgaaaagttcagaacggtttgctcaagcattgacaagctagacaagcaaacatttgaacaagtgaaaaaggaactggtaagtatccaaactaacatgttatggttcgtttatttgatgttactgacttgatcatggccctaactgtttgtcgtgttgacttaggtggacgagaagggcatatctaatgaaactgcggataagattggtgatttagtgaaaactaggggaccaccgctggaagttttgctggaattgagaaaggaaggtagcaagtttatggggaacgctgggtctgttactgcactaaatgagctggagatactattcaaagctctagataaagcaaatgcaataggcaagattgtttttgatttaagccttgctagaggccttgattactacactggtgtgatatatgaagctgtgttcaagggcaccactcaggttagataatttttattcatctctgcacctcatttttaaactggttagtgttttcagttagcccatcattttgtttattcaattgcacacttgataaactggaaatcgttctatatcccttctgttcttatcattcttataattggaaaggatgtcctcgattaccttttttttttctaattgcgtagtctttagtagttgattacaatttaccaggcactggtttatatctgaaaatcttccactttatttgtcatctgaacttatttaacacctttctctgaccgattgaattatagttgcttcctgcttcctgaactaaccctatttcccaacaggttggctccattgctgctggaggcaggtatgacaaccttgttggtatgtttagtgggaagcaagtccctgccgttggtgttagccttggaatagaaagagttttcgcaatcatggagcaacaggagatggaaaagaatcaggtacctaatgctcctatcacctattcattctttgaatgagttgcaataacataacaaaatcgttcctgagttgcagatccgggccaccgagacggaggtattggtgtcgattatcggcaaggacctcatattggccgctgagcttgttagtgaactgtggaatgctgggataaaggcagagttcaaactcactactaggatacagaaccacttgaagtacgcgacgcaatctggcattccgtggatggtgctggttggtgagtctgaaataagcagtggaaaggtgaagctgaagaacttggcagccagccaggaagaggaggttgacaggacagagtttgctcaggtgttgaaacagaaattgagaaacccatagagaagatttttagaatataattttgtagttcatgtttcaacttgtgatgcatcatacttgcctgtgtgagttcctggaaaattccgttcggcgttttgatttatactggctgtttgaattggtttacatgttaaagcgcttggtgtaattgaatcaaattaccaaattcaaaacattactctactgattggtgaccaact</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0150900, RefSeq:Os05g0150900