Os03g0854800

From RiceWiki
Revision as of 19:47, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os03g0854800

Description

PARP, catalytic domain containing protein

Version

NM_001058475.1 GI:115456678 GeneID:4334829

Length

5521 bp

Definition

Oryza sativa Japonica Group Os03g0854800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:36852690..36858210

Sequence Coding Region

36852964..36853032,36853323..36853418,36853510..36853695,36854445..36854506,36854610..36854851
,36854965..36855387,36855467..36855474

Expression

GEO Profiles:Os03g0854800

Genome Context

<gbrowseImage1> name=NC_008396:36852690..36858210 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:36852690..36858210 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>aagctcaatgaaagtggtgaagtttctggggaaaataaaaagggccatttaagccatatgaatgaaactgctgatggggccatgcaagctcctcgtaataatcaaagtgtccagcgtgctgattcagctgttcggaatttgttgtttcaaggatcaggccatctatttactgaaaaagacatcatcggtatttatagaaccccaatgctagatcaacttgggaggtcccgttatagtcttttccagaaggaggtacaagtcacaaaaaatcaacggggaaatgcaaatgagcgttatgcatggcttgcttgcactaagggtactatggaggagatgatgatgaatggtgctttggaaatagcaaaacctctgcagggtccaatgtatggtgttggggctcatcttgctccagcaaactcctccaatatctgtgttggtttatctgatattgacgaaaatggaatcataaggatgatgttgtgccgtgttataatggggaatgttgaggtggttttccctggatcaaatcaatgccagccaaccagtgaaagttttgacagtggtgtggatgatctccaaaggccaaagcattacatcatatgggatgctaatgtgcataagcacatttatgctgaatatgctgttattatcaaagtaccttacatgaacaatggagatactgcatccaatatctctgagataagaaattctggtgcactagacaatccaaccaaggatgacagtctacagaccattgcgtcttcaggtgatgaacaacaagcatgtatgcttgggcgtgctccaagtccaaggtctcctagttcaccttggatgcccttttcaatgctttttgctgctatttccgctaaagtaccccgttcggacatggatctggtgcataaatattatgaagaattcaagaggagaaagataagcaggcctgacctagtgaagcagctgagacagattgttggtgacaagcttttggtttctacagtagtgagacttcagcagaagttgccacccatggcagcaactgaacaagcgccaagagcacctggaaggggaggaggtgctagtccgtaa</cdnaseq>

Protein Sequence

<aaseq>KLNESGEVSGENKKGHLSHMNETADGAMQAPRNNQSVQRADSAV RNLLFQGSGHLFTEKDIIGIYRTPMLDQLGRSRYSLFQKEVQVTKNQRGNANERYAWL ACTKGTMEEMMMNGALEIAKPLQGPMYGVGAHLAPANSSNICVGLSDIDENGIIRMML CRVIMGNVEVVFPGSNQCQPTSESFDSGVDDLQRPKHYIIWDANVHKHIYAEYAVIIK VPYMNNGDTASNISEIRNSGALDNPTKDDSLQTIASSGDEQQACMLGRAPSPRSPSSP WMPFSMLFAAISAKVPRSDMDLVHKYYEEFKRRKISRPDLVKQLRQIVGDKLLVSTVV RLQQKLPPMAATEQAPRAPGRGGGASP</aaseq>

Gene Sequence

<dnaseqindica>5179..5247#4793..4888#4516..4701#3705..3766#3360..3601#2824..3246#2737..2744#tctcctttcctctcgcccaccggaatcctcctcctccgcccctaggcaaggcaaggctaggattgccgcccgccggaatatctcccccaccgccgccgccctcccgccggcccacgggattggattcgcctctttacaaggcctatcctgccctctctactaccacccttatcgatctctatctggtttcctttacctttcgatttgattcaaccacatcgaaatcgattctatctctacccgcgacgcgatgaccacctcctaccggtactgcttgctaatcccgatcccaccttcctctctctcttgtgcgctccatctcttgttattttactactatcatcttcagggcttggcttcgattcgttctaggtttttcttttcttttcttttctttatatatactcttggtgttgttcttgtatggtccgaaatgatccatgttgattggggctctagactgcacaggcatatgcatccaatatcttcttctaggcacaattaatttaatttcttgtgtgactctaggatctaacctcgattggtggatgttaactgctagttccctgtgttgctagtatgttctcttcatccttcactcattacatgtcatctaaaaggtacatgtttcatgtttcggcggtttagggagcgttcttatactaaaaatcatcatacatgccctaataaaaattatatcttcccccccccccccattactgcacctattgtactgctggtgccataaataaaccaaatccgcattcatcacttgctaaacaaaccattgcaaactgagtttgatttactcaatgttatggatggtgcttatctaattggcataacaagctttgtgcgtcagggttcatcggtcatcatccagctactatattcacaactcgtgtgatggatgtgcttacgtgctttccagtgccatgggatcgtattgtggccttcatcttggtttctccaccaatgtccgtggggaggaaccatggccaacaatggaattatgttcttcttgttgctggagcaccgttatcttcttctcctattattttctgttgccgccttcttctgtgccaaccagccacaccagcagaagttgtgcttcgactgatggtggcgggaagcacaattaattgtgcccttcatttcagagcatgccgaaaaatctccttcccctcttcagatttatacttactgccaacaatgatgagtaccatacatgctaatcgtatagctcctttaatagcgagttactaacaaaggagtttaattttatgccctccatgggggcttatttttaaacgaattgattttatagttaacgttcgcatcactcaaccaggatgtatgctttaagaaatataacatgattgccatgtaaaacgcctgatgcactattatcatatttcttgatgagttgggtcctgaagaaacatttttttcagttaaaatagccatccatcaaactttttttttgttaaagaaaataaactatggctgacaagatttccatgttcttaattgctttcagtctggagtgctttctgatctctaagactagtgttctcgtaggctaggtggtcacagtagtttaacatgatgtccatctagtataacaggactcgtattttttttctataattgatgctaagatttatatatcttctcttatcttttgttttagttagtcaacattttagccttacaagcatagtttgtcgtatcctttttggaaaataaacggcctatacttttctgttgatatctgaggaggtgtatggcctgcgtcaaatttattcacctgtggtacaaaggttttagctagaatctcgtgggttggctatgaatgatatgtgcaagaatatataattgttccagacataaattaaatattgcctgtctcttgtactctttatatatacatctttatgccatctttattcctttttttttcctcttggtctcaggtgtatttcacttactcttttggatagcatggcttatatcggaactacctctatgctaacattgtctaggtctcattagctagattaacttaactgttttcacttagtggtgttagtctgtaaagaaaatgaatacccagtcttagttgagtcttttgtaaaaaaaaaaaatggaaccaaagaatgcaattgcactggatgaacatgtgctggattctactatccgcaagaggaagcgtgtgggtgctactcaatgtgctgaggccaatgacgcccccaacctctctcagaatggtccaaaacagaatctcgctttatttcctgattcgactggacataagaagtccaagatgatgtgctctgccgatgacattctggagaggtacaataacttcaagataagcgggatgcctgttcgtgtgatgtctcaccaacatggtggatggagagacttcccagaggatgttgtcaattcggtacagcagagcttccagttgaagaggccaattactagtgcagtattccagaacaggcacatcctgttggacttcatgcagatggtttgtttagattctgtgatggccataagcaagccaattgcttggatcgatgatcatggtaaatgcttctctccggattcatgtgctggagtaataccatctgaacctctgcagcatggaaaaaatgagttcttgaaaagttttcatgatctaagcagtagttatgaagctcatgaacatgatgggatgtctgcagctgaaagctcaagttcagcgtcttttgatgcagtgctttctgatgttcaggaggtcaataatgtagtggaggacaaacagaaggtactcaatgaaagtggtgaagtttctggggaaaataaaaagggccatttaagccatatgaatgaaactgctgatggggccatgcaagctcctcgtaataatcaaagtgtccagcgtgctgattcagctgttcggaatttgttgtttcaaggatcaggccatctatttactgaaaaagacatcatcggtatttatagaaccccaatgctagatcaacttgggaggtcccgttatagtcttttccagaaggaggtacaagtcacaaaaaatcaacggggaaatgcaaatgagcgttatgcatggcttgcttgcactaagggtactatggaggagatgatgatgaatggtgctttggaaatagcaaaacctctgcagggtccaatgtatggtgttggggctcatcttgctccagcaaactcctccaatatctggtaaataccttttgtttctgatttatttgttctatgtgctcttacgcctctggtgttactgcttttgttttggatgtatagtagcctatgtcttacttgaagtttgtccacagtgttggtttatctgatattgacgaaaatggaatcataaggatgatgttgtgccgtgttataatggggaatgttgaggtggttttccctggatcaaatcaatgccagccaaccagtgaaagttttgacagtggtgtggatgatctccaaaggccaaagcattacatcatatgggatgctaatgtgcataagcacatttatgctgaatatgctgttattatcaaagtaccttacatgaacaatggtactataccatgttttttcccctctcttttttaccttgtgtcgttattttccatttgccctagataacttattttatattactgtatgctatttggttacaggagatactgcatccaatatctctgagataagaaattctggtgcactagacaatccaaccaaggtatgcatattatggtttagctggtgtgctgttgttcactgaagcataattcagttctgtcatgtagtacgttttgcgggaaaattgaatttgtctcacctaggcttaatgatctattatgtagtgtagtggaaagggtgaatggatgcttagacttgaaggcgtgttttgtgcttctcgttatgggatttgctcactttattagcgaaatttccagttggcgtttaaataggttcccatttattactgtttccgcagttagtgttctttaacccgaaaaacataaagatgacaattactatatctctttatattttggttatggcctatggcagatccttattgaattccactcttgtatttcttgacttgatggtgatggaatttcatatttttcttcatttttgttgttgattagtaccttttaatgtctgatcatatatggtagtggtgtaggatgggggcgggaagatcaaagaactttgcttagttatgtgtttccttcttgctgatgctctttggatgtaaatgaaatttactgaaatggattcaggttctgttggcccaattcctctgcttttcataatttgcagaaactaatccggttgatttttctaaaagaaaaactggttcacaattgaatgattgataattggcacttaatgggcgagcttagttgaccttgattttgatgacagttttaggaaaaatttcatcttgttaatttgttgcttgcttgttgtgagcaggatgacagtctacagaccattgcgtcttcaggtgatgaacaacaagcatgtatgcttgggcgtgctccaagtccaaggtctcctagttcaccttggatgcccttttcaatgctttttgctgctatttccgctaaagtaccccgttcggacatggatctggtgcataaatattatgaagaattcaaggttatttgtccttcctttggagattttcagctacatgcaatatttgtttgctggcatgctaattatggtatggtttttgatgttaaaatagaggagaaagataagcaggcctgacctagtgaagcagctgagacagattgttggtgacaagcttttggtttctacagtagtgagacttcagcagaaggtacttcttttttactgtgctaactctttgtatacagttcacttaggatttgaagtcctccatcctcactcaatgtgaagcctgctgtgtatatttgaggaagcgtggtacatggaattatgcaatcagctaattgatttttttccccaaaggaccacatatcatgcttagtatgcagcatggaatccgtagcattgtttcataccgtctaatgtttgagtttaccatttactaatttccactatattattcaaacatatgtttttacttactattgatacctgccgcagttgccacccatggcagcaactgaacaagcgccaagagcacctggaaggggaggaggtgctagtccgtaattaaaaatgacagtttgccgacataacaagctgtggaggagtcgggttgagcaaagagagctcaaggaaatgtgtgtaaaacgtttgtgccgtaatgcacagactttagctcttgacaaacaaaactagtctaaacttccttgttgacaacatgttgtttggttgtataaccatgcatggtattctcgactaccggctgtagtgttgttctttttcgccgtcaaatgtagctgcggcttgaattcatcaatatctcctgtggatatttcgttcc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0854800, RefSeq:Os03g0854800