Os05g0160800

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Revision as of 10:08, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0160800| Description = DNA polymerase epsilon subunit B family protein| Version = NM_001061258.1 GI:115462246 GeneID:4337886| Length = 4933...")
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Gene Name

Os05g0160800

Description

DNA polymerase epsilon subunit B family protein

Version

NM_001061258.1 GI:115462246 GeneID:4337886

Length

4933 bp

Definition

Oryza sativa Japonica Group Os05g0160800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:3558756..3563688

Sequence Coding Region

3560037..3560060,3560148..3560279,3560506..3560583,3560664..3560768,3560857..3560937
,3561029..3561159,3561237..3561331,3561646..3561745,3562617..3562731
,3562812..3562922,3563123..3563269

Expression

GEO Profiles:Os05g0160800

Genome Context

<gbrowseImage1> name=NC_008398:3558756..3563688 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:3558756..3563688 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaccgaagatgataattgtgagataacttctattcagtccctaattgggtgcactggtcggagatggattatgggggtcatatcacagttggaggaacgtcaattctacttggaggatcttactggagctgtgccaattgacttatcgaatgctaaaatcacttcaggtttcttcgttgaaaatactgtaattgtagcagaaggggaattgctttcaaatggcattttccaggtaaatacatgtggattccctcctttagaggatagagaagcatcactttcgatgcttatggggctagatttcttcggtggaggtgtcataccaactgaagaaacagtaaggctatcaaccttagagaagaaggccatgaatgatatgtttgttatactttcagatgtttggcttgacaattatgagaccatggagaaattaggtgttgttcttgatggttatgatagtctagaagcagttccttccctttttgttttaatgggcaatttctgctcccggccctgcaatctggcattcaattcatttgaagaactcagattgcagttcggaaagcttggtgagatgattgcagctcgatccaggttaaaggaacacagtcgttttttgttcattcctggtcctgacgacgcaggcccttctaaagcccttccaaggtgtgcacttccgaaatatctaactgaggaactgcagaagcacatcccaaatgcaatattcgtaagcaacccttgcagggtgaagttttatacacaagaaattgtatttttccggcaagacctcctttataggatgcggcggtcttgtctgattcccccaacaacagaagaaacaagtgaccctttcgagcatctggtagcaaccatcacccatcagagtcatctttgcccattgcctcttacagttcagccaatcatatggagctacgatcattgccttcgactctatcctactcctcatacgatagtactgggcgacaagagcgaccagaaggccttcaaatacacaggaataacttgcttcaaccctggttcttttgctaacgatagcacctttgcagcttaccgtccttgcactaaggaggttgagctttctgcattagaaagctaa</cdnaseq>

Protein Sequence

<aaseq>MTEDDNCEITSIQSLIGCTGRRWIMGVISQLEERQFYLEDLTGA VPIDLSNAKITSGFFVENTVIVAEGELLSNGIFQVNTCGFPPLEDREASLSMLMGLDF FGGGVIPTEETVRLSTLEKKAMNDMFVILSDVWLDNYETMEKLGVVLDGYDSLEAVPS LFVLMGNFCSRPCNLAFNSFEELRLQFGKLGEMIAARSRLKEHSRFLFIPGPDDAGPS KALPRCALPKYLTEELQKHIPNAIFVSNPCRVKFYTQEIVFFRQDLLYRMRRSCLIPP TTEETSDPFEHLVATITHQSHLCPLPLTVQPIIWSYDHCLRLYPTPHTIVLGDKSDQK AFKYTGITCFNPGSFANDSTFAAYRPCTKEVELSALES</aaseq>

Gene Sequence

<dnaseqindica>1282..1305#1393..1524#1751..1828#1909..2013#2102..2182#2274..2404#2482..2576#2891..2990#3862..3976#4057..4167#4368..4514#gaggccgccgccttcctcgcccgcttccccgacgccgaggacgacgccctcgacctcctcctcgacgagctcgacaaggagccgcgtaaccaatctgtctctcccctctctctctctgccctccccgtggtctcgtctccaatttggctatcgtttggtgcgcgcgcgcgtgcgtgcagtgcagtcgtcgattcttgaccgggacgcggtgcggcgcgtggtggcgctgctcgtcgaggcggacgaggcggtggatgcggcgtctccggcggccaccagcgcgcgctcggcgctgcgggtggtggattcgttcgtcgtgccaaggttccactacgatccgatcaagaaagtcttctacgagtacgtagatgccgcttcttcctttccttgtacatcctcttgagaatttcgctatttccttttcccgctttggtgttgaactgtggttagaattgctacattgacgaaattgagttctaagtctggctaaatcttcaatgattcaacaaagaatttatgtagggcatagattccaaaatgatgctactgattttcttttaaaataattaaacctcatttctgtgtgaagagaaaacttgttagatgtatagtattttttttttgtttggattcagtatattgtgcttcactagatgagattgttagcttcttaatgagtattgaactattgatttggttttggaaaaaaaatcaaatgacttgattttatgtgacaattaaagatttgccactccaatgagatgcagttgagactactgtatgtatggctaggttaacatgtcgcctgctccatcctcatgccaataagacatttagcggcaatatttgcagtggcaactcttgttagatatggaagtaacttctggcctactgcaccatggatgcacacatctactccctccgtcccaaaatatagcaacttttggctatgaatctggacacacagttgttcagattcaaaacgcttatattttgggactgagggagtatttaattatgagcatcattgattacacatagattctcttgatgctaggactaatgagcttaaagactgtcctattatttctaaccaagactgaattataagttataatgagttaacagccctgaaatatgctattatataggcataccagcagattagccatacatggagaagctggagataaagcagccctgtacagggacaggtatcaggttctgcttcagaggctagctcgtgatatatacttctctaagccagcttttgacactgttatgaccgaagatgataattgtgaggtatttttttttgtttcatgtcatgattttcacaaaatattcttagttcttgtatgtgaaattacttacacacttttttacatgtagataacttctattcagtccctaattgggtgcactggtcggagatggattatgggggtcatatcacagttggaggaacgtcaattctacttggaggatcttactggagctgtgccaattgacttatcgaatgctatatcctgagagcccattatttgtcatattgtagtatgatttatctaaaaattgaatagtttctttagctacctatgaaatatatataacaacaaaaggtctgctcaaatttgagtgataacatatcattaattcaggattcatgtttgacactaaaatttaatttgatccatatcaatctcttgcttactcagaaaagtgttatgctttccttagcacaaaacacaaaatcacttcaggtttcttcgttgaaaatactgtaattgtagcagaaggggaattgctttcaaatggcattttccaggtctgtaattcttatcaacaagaatgtgttcagctcttgtattgttgtgttcaatctgattttattcctatcatctgcaggtaaatacatgtggattccctcctttagaggatagagaagcatcactttcgatgcttatggggctagatttcttcggtggaggtgtcataccaactgaagaaacagtaagttcaaatatttctgttccgcatgtaatctgacttttcaaaataacctttactgattaattttatcaatggaaatatcaaacaggtaaggctatcaaccttagagaagaaggccatgaatgatatgtttgttatactttcagatgtttggcttgacaattatgaggtatcttcatttgtactaggccctatttcaaataaccattattattgagccatattctcaggatgttcatatgtgttttctcgtagagaagaccatggagaaattaggtgttgttcttgatggttatgatagtctagaagcagttccttccctttttgttttaatgggcaatttctgctcccggccctgcaatctggcattcaattcatttgaagaactcaggtctggcttttaagttatataagatagtcaaagcttgtattttgttttcaccttccaatcgaagaaacctattgtagattgcagttcggaaagcttggtgagatgattgcagctcgatccaggttaaaggaacacagtcgttttttgttcattcctggtcctgacgacgcaggtactcgaaaacccattgatttgcttttagctgacaactgttcatattcacatgtgaatttgctccaactcaattttgtttgctccaaaatgtattaaatctgagttggtctattcttttttctatgccctactattattggcattccttttgtatttaaattaatgaatgctgtgatatggttggtttgaaatgaactcgttaattgtaaatggaataatgtcattttatgtcccagataattggaatgagatgtttctttctcttcctttttctgtgatgtgctatttctcttacttgattacatatttcaggcccttctaaagcccttccaaggtgtgcacttccgaaatatctaactgaggaactgcagaagcacatcccaaatgcaatattcgtaagcaacccttgcaggttcgacattaaaatattgccttgtatgattgtgtcattatctgaatttctacattgtgcctgggttttttatgaagctatgggcaccatcaatacatggataaacatttctggttaaaactattattatatgtacaaatttagaaatgtcaaaaataagcatttggacaagaatgcatgatagtgctatttcctttttttttcaaggctgaaggataaaaacgctggtttctttttattggaactgaaaataggatgctgtttctttttatgtttctaccacatcgtaaattcgttatatttaacacccaattgttttcaccataagtccacattttatggtcaggtccatagtccattgcatgattcagactaagctgttggtaacctgtagttattttgacgactcacagaacccccttattattgttctgagagctatccacacaatatcatgatcatgatgcacactagtaatagcttcatgttaaattgaagaggctataatcaccatacctgtactagtctactgatgtgtattaacagatttttggtcggtggcatgatgcatgatgcgcacattctacttttttgtactaggcattatcttcctcattttatcaatttttttctgaacttatctgattctatctttagtgattccactgtcatttcagtcaatcttggaaaaagcttcatatactcactacccactgagactaccatatagtgatagattggcagagaagagcttgtctaagctatgccattaaccctttttgagttgtcatgattaagaaaacacttaagtttgcagattgttcaattattatctgttctatctccagtaaataaaactgtaattatccagggtgaagttttatacacaagaaattgtatttttccggcaagacctcctttataggatgcggcggtcttgtctgattcccccaacaacagaagaaacaagtgaccctttcgagcatgtatgttaaatacccctcctttgttgttatttcaataagcatatattgttcaaagaattaacacatcattttcttttcagctggtagcaaccatcacccatcagagtcatctttgcccattgcctcttacagttcagccaatcatatggagctacgatcattgccttcgactctatcctactcctcatacggtatgcaatttaggacataagcctattcaggaccttgaaatgtgctctaaatttgttgcgatgaatgtgctgttgtgctcatttaattgcttgaccgtgcatgtgtgattactttcttttgtataactattacaattcatcactataaacaaaagttttggacgttctttgctgattttcttcctgaaaaacttcttcagatagtactgggcgacaagagcgaccagaaggccttcaaatacacaggaataacttgcttcaaccctggttcttttgctaacgatagcacctttgcagcttaccgtccttgcactaaggaggttgagctttctgcattagaaagctaatattaaagagatcaaaatgaggctcaccaatttggccaatttggtagcctgtaccatccaaactagcattctccaaatcttcgatgaactgcctatcgccttggacatcagcctgatatttatgacttggacatacaagttaaggtggaggccattttcatgcaagctaattcgaggagatgacataacatgcatgacgccatggttggtgtttctctcaagcaaactgatgctgacatttagatggcatcatggtagtggttttcttataacaaggattgaaattatacttagcatagcagaatatttgtgatgtattttgcttaagccattctactttgaaatatctaggcttaaattgttgtaaaccaaggtaacaaaagtgctgctttcttgttccttcaaaggtttaatctccc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0160800, RefSeq:Os05g0160800