Os04g0107500

From RiceWiki
Revision as of 19:47, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0107500

Description

D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region domain containing protein

Version

NM_001058552.1 GI:115456833 GeneID:4334916

Length

3508 bp

Definition

Oryza sativa Japonica Group Os04g0107500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:444169..447676

Sequence Coding Region

444274..444702,446864..447385

Expression

GEO Profiles:Os04g0107500

Genome Context

<gbrowseImage1> name=NC_008397:444169..447676 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:444169..447676 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggtggcgccatcgcccgacgccgggaagccgctggtgatcctgctgcggccgctctacccggagttcgctgccgcgctggacggccgcttccgcttcgtgcttgccgccgacgccgacgagggcaacgcagcagaggcgagggccgtgctcgtgccggctctgacgcctgtgtccgcagatctcgtggctaggctccccaagctggagatcgtggtggccacgtccaccggcgttgaccacatcgacctcgacgcgtgccgccgccgcgggatcagcgtcaccaacgccggcgaggtgtttgcccccgacgtggcggactacgcggtcgggctcgtcgtcgccgtgcttcgccgcgtggccgccgccgaggcctacctccggcgaggcaggtgggcggcggacggtgactaccctctcgcgaccaaggtgagcggcaagcgggtggggatcgtggggctgggaagcatcggcggcctggtggcgcggcggctggcggcgttcggctgcgtgatcgcctacaactcgaggtcaccgaaggcgtcggcgccgtacaagttttaccccagcgtgcgggagctcgccgcggagagcgacgtgctggtgctgagctgcgcgctgacggaggagacgcggcgcatggtgggccgggaggtgatggaggcgctggggaagggcggcgtgctggtgaacgtggggcgcggcgggctggtggacgaggccgagctggtgaggtgcctgcgggaaggggtgctcggcggcgccgggctggacgtgtacgagaacgagccggaggtgccgccggagctgtgggggatggacaacgtcgtgctgtcggaccaccgcgcggtgatcacgccggagtccatccaaggcgtcgtcgacgtcgtcaaggccaaccttgacgccttcttctccgggaagcctctcgtcagccaagtgcagctctga</cdnaseq>

Protein Sequence

<aaseq>MVAPSPDAGKPLVILLRPLYPEFAAALDGRFRFVLAADADEGNA AEARAVLVPALTPVSADLVARLPKLEIVVATSTGVDHIDLDACRRRGISVTNAGEVFA PDVADYAVGLVVAVLRRVAAAEAYLRRGRWAADGDYPLATKVSGKRVGIVGLGSIGGL VARRLAAFGCVIAYNSRSPKASAPYKFYPSVRELAAESDVLVLSCALTEETRRMVGRE VMEALGKGGVLVNVGRGGLVDEAELVRCLREGVLGGAGLDVYENEPEVPPELWGMDNV VLSDHRAVITPESIQGVVDVVKANLDAFFSGKPLVSQVQL</aaseq>

Gene Sequence

<dnaseqindica>106..534#2696..3217#agtcttccaaaaaacaatcgaccacagccttacctggtgctggtgaggtgagcagagctatcccaattccaattccaattcacaattcccaaagtggaggagaagatggtggcgccatcgcccgacgccgggaagccgctggtgatcctgctgcggccgctctacccggagttcgctgccgcgctggacggccgcttccgcttcgtgcttgccgccgacgccgacgagggcaacgcagcagaggcgagggccgtgctcgtgccggctctgacgcctgtgtccgcagatctcgtggctaggctccccaagctggagatcgtggtggccacgtccaccggcgttgaccacatcgacctcgacgcgtgccgccgccgcgggatcagcgtcaccaacgccggcgaggtgtttgcccccgacgtggcggactacgcggtcgggctcgtcgtcgccgtgcttcgccgcgtggccgccgccgaggcctacctccggcgaggcaggtgggcggcggacggtgactaccctctcgcgaccaaggtaattcattaattaaggctgtgtttacgtataaagtttggatccaaacttcagtaattttccatcacatcaactttcatatacacataatttttcagttacaatattttcaatttcaactaaaattcaaaccgctgaattaaatacagcctaactaatgtactgtaattattggatcggaggaacgatccaatcacgctatttattgcagccttaattcatgagtcagtcattcacaaaccgtcagaaattttctctcctcttttcatgtagcagttcaacgtttacttgtaaactcatccaaagtataacttgcattattagtggctgaggaaataccgaactttccaggataaaaaatgagaatttcagtaattttggaatgggaccatctaaaaatatttgggcccaaaaattacaggtccttcaaatatgtcattatattccaaactcttcataaaatttgccatgtcatcctagatgggtcatccttcaactgattcaggcctccttcaatctgctctcactagtattgggggtcgttttgggagctataggatgggtgtttttttaatcccttatcacctacatctaaaataacatatttgaaatcggctccatctaacacattgtgtcataagacaatgtgaatccaaatttaaagtaaaaatgaaaaaaaaaatcatatttttccattaatgacttgctggcccaaaattatgatagtgtttaagatagattaagatcgagcttagcccacctatctcctcttaagctttgctcatttcgtcctcttcaccctggtccacttagagcagatacaatagcagactataagccagctgcaaacatattttaagaagataaataaaaaaagaaaagagcagcgggctacagatttgtagccagctgtagcacagactctaagacgcagtgtgtatatgacaaatgggaccaggtattaatagtgtagtatatgactattgtatggataagctattagattggctatagatgaattggagctaatagttggctatactattaaacttgctcttaggctctattcgttccagggtgataggggagattgagtctcgttttccgcgcgcacgcttttcaaactactaaatgatgcgttttttttaaaaaaaatttctataggaaagttgctttaaaaaatcatatcaatctatttttaaaatttaaaatagttaatacttaattaatcatgagctaatggctcacctcgttttgcgtatcttgtcaatctctttaatcctcttctcctcaaacacacccttattcatccacctcactaactttctcctcttgtccacccaaactgccgtcggaggtttggatatgagctaccgtaagtctattagagcaatttttataatagagatggctattatggtttacaggtaaaatgaaaaaaacaatctgatcaaattattatggtttacaggtaaaatgaaaaaaaatctgatcaaattaaaaagtttcaggggagtaaattggagttttcttttttttgtaggaatgacacaaattagcccacatctctaccctgcccccacttatctgtacactgactttctccttctccctcaccgccacccaccgtcgccgcctcgccggatatggcgccgccggcgacccaagacggttcttcgtccaaaccgatcgtgctcttggccgaccctctcatcccggagttcgagcaggagctcgcacccagctaccgcctccttcccgccgcggacgccgacgaggccgccgccgcctccgcgagggcgctcctcaccgtggacctccctgccgtgaccgccgcacaaatcgacgcgctcccggcgctcgagctggtggtggcgtcgtccgcgggcgtcgaccacatcaacctcggcgcatgccgccgccgcgggatcgcggtcaccaatgcccagaacgcgttctccgccgacgccgcagactacgccgtcggcctgctcgtggccgtgctccgccgagtcgctgccgccgacgcgtacgtcaggcgcggcgcctgggccgccgccgccggcgattaccctctcgcgagcaaggttcttgcagatttgggtggaaagaaaatcgaggtgaatcgaaatgctaatccgatgatctctctctctcgcaggtgagcggcaagcgggtggggatcgtggggctgggaagcatcggcggcctggtggcgcggcggctggcggcgttcggctgcgtgatcgcctacaactcgaggtcaccgaaggcgtcggcgccgtacaagttttaccccagcgtgcgggagctcgccgcggagagcgacgtgctggtgctgagctgcgcgctgacggaggagacgcggcgcatggtgggccgggaggtgatggaggcgctggggaagggcggcgtgctggtgaacgtggggcgcggcgggctggtggacgaggccgagctggtgaggtgcctgcgggaaggggtgctcggcggcgccgggctggacgtgtacgagaacgagccggaggtgccgccggagctgtgggggatggacaacgtcgtgctgtcggaccaccgcgcggtgatcacgccggagtccatccaaggcgtcgtcgacgtcgtcaaggccaaccttgacgccttcttctccgggaagcctctcgtcagccaagtgcagctctgaacgtactacaaacaagtacactcagtttctgaacctcaacctgcattctcaacctgaaaaataacaagggacaagttgttgcttattcatgtttgtatgtatgcatatgctgcgatttcgatctgagccaatcatacataaattgggaggataatctgagatgattacacattgttgtgttcactgatttgcaagcagccctgtatcttgttgttgtaacacacatcagagtaaactcaatcaatactccattcttgtggagtattattcaatgtcttaattttctttagg</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0107500, RefSeq:Os04g0107500