Os04g0120000

From RiceWiki
Revision as of 19:47, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0120000

Description

Peptidase S8 and S53, subtilisin, kexin, sedolisin domain containing protein

Version

NM_001058603.2 GI:297602080 GeneID:4334972

Length

6982 bp

Definition

Oryza sativa Japonica Group Os04g0120000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:1171479..1178460

Sequence Coding Region

1171479..1171676,1171767..1174000,1174086..1174337,1174418..1174528,1174618..1174699
,1174974..1175079,1175820..1176433,1176562..1176629,1177525..1177663
,1178132..1178321,1178357..1178460

Expression

GEO Profiles:Os04g0120000

Genome Context

<gbrowseImage1> name=NC_008397:1171479..1178460 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:1171479..1178460 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgaacgaaaaggttccatcgaacgcaccaatagcgcctcaagaaggtaacgctcctcaaaattccggtagcaataagcatccaggcgcttctagtgaagaaacgtggcgcacaccaagtgacccgtttccaatggaaataacacaagtcgccccccgcgatgatgatccggactacatacctatcgaacaggccatggtagtccgacgccgctcgaaacgtaaagccgggaggaacaggacagagcaagaagttgagatggacaccgctacgtctgcacctgaacgtacggagacatctacaagtgcaggcgggagtgggaaaaaaagacgtggtgagagaagcaagaataaattacccaaggaaacttacaacgtgattgctctcgatcaggatgggaagcccatcgagccaccgatagtgcggtccaagttcagcaacgcctgtggcactctagtcaggacgcgttgtcccattaatgtcaagttgtgggaaacagtggacgacaacatcaagacacttctctggaatgagttgcagaagtattttgtgttccctcctggatcagaggttagggggagagattacgcacttaaaaagatgggagatcgatggcgacagtggaagtccgatctaaatcgggattatgttcagaagaatctcccaccgtttacggattatggacatatatcgcaggctgactgggacacgtttgttgcggatcgtacaacagctgaagcattggctttgaggaaaaaaatgtccgagctcgcgaagaagaacaaatatccccatagattggggtcgagcggatacgctggtcacgtcgatcaatggcgggagatcgagcaaagatttgccgcggccggtaagcccctgctggtagaccccatggttgaacgtagcaagaactgggtttgggcgcgcagcacaggtcaagtctcggatgagggagacatactattcgagactccagacatagaagaagtgactactaatttgcagcagatagtcgagaaagaaagatcaggacagttcgtcccacggagggagagagatcagcttactgcggcgttggggacggctgaacactctggacgtgtaaggggtttgtcctcaaagacaagttggaaggtcgggtttccacaagacgcaccaagttataagaagagagacaaatacaaagaacaactatcggacaagatctatgcgcaagtgaaggaacacttctactcgttggcagctgaaaacccgacagcatttccaaggttattccctgatagccagcaacccacacaatccgcacagcaaacaactaatgtacccagcagtgtaggctcagtgcagacaagtaccttccctgtggatagtataactggaccaactccgtgcagtctcgtcgtaccaatcggccgcgctggaaagactaaggaggttgcaacgggtttagcgatacccggacgtcaattccacaacacggcaatccctgaggattacgcaagggtacaggtcgccaaggtccatagcgaccacgtttccttggaactagacatacctgcacctgaggggattgaacttctcggtgatgcagtgaatcagtttatcttgtggcaccgcagagacataatcctgagcgcggccgttcttgcagcaggatcttcaaccccatcctcatcgcaggcaatgactgctgccgctcctgcaccaccgtcgcctcctgaaccaccgtcacctcgacatccgccgtcaccaccaccgcttaggtcaccgcctcgccaacctacaccaccaccctccccttctcaacaaccgcctctcccgaccccgcaaccagttcaagcctctcccacctccccaactaaacagcatgctcccccggctccgccctcagttcaaacctctccacctacaccccaatctgctctggtagaagaagtgcacataccagatggtactacatccgaaccaaagtctaatactttggaacctcgtcgtataattccaaagttgatatcgacatacgacccaaaggagattgacaaggataaggagaagttcatgttttcagctttcaggaattctgagaagagaaaagaacttgctcacgtcttgtcagactcccagaagtcagtactagcggcccaagatgaagtgcaatcctggttatctgccgatgtgcctgaaacttatgagtatggcaagccattcttgccaacttatcttatgaacaagctaccatgggaaatgagggtaatgcacgaatggtatatgaaggcatctaggaaaggtctcggtttcataagcgtcgccgtcccggaaggcgctttcatgagtggtcctaatgggatattttttatctctttccaagacctttacgccctctacaagctagataaaatggacgttaatctcgttgcggctttctgtcttatgcaattccacgaagctgatagaactggagcaaaggttggatacgtcgatccaacaagaatatgcaaaacacaacacaccatagagctgagacaggactgcgagcaattggttggcaagaccccggaagaaaaggaagaatatgtgaagacattgcacaagaggaagaagctagaagtagcaacatacttggcaatagcaatgttggcgcacgccgacaaagatgtcttaatggtcccctaccagttcacagaccactacatattattccttgtatatccgaaagaccaattgatcatatcattggaccccgcacactatgacaaggagacatttatggaattcctcactattttgaatttagcacacaagtactaccgcaaaagaggtggaccagtacatattccatcccagaagaagttatccgtcaggactggctggccgatccccgaaatcccatatattgcacaacgattcaaccacactactatcttgaacgtggccgctgacctctgccgattcatccgtcgcgatgtctgcaacgcaagaggtgtcacgcctgagtcagcaagctttgccgatactggatatgaccccccgccaaaaaaatggaaagggatttgccaggttggcccatcgtttgaggccataagttgcaaccggaagtttatcggtgcacggtggtacatcgatgacgagattctaagtagcatatccgataacgaggttctttctcctagggatgtcgaaggccacggcacgcacacagcctcaacggctggcggcaacatcatccacaatgttagctttctggggctagctgcagggacagttcggggtggagcgccccgtgcacgattagccatatacaaggcctgttggtccggttatggctgctccggtgccaccgtgttgaaagccatggacgacgctgtctatgatggtgttgatgtcttatcactttctataggtggtacaaaagaagatgtgggaaccctacatgtcgtcgctaatggtatctcggttgtctacgctggtggaaacgatggtcccattgctcagacggtggagaaccaatcaccatggctagtaacggtcgctgcaaccaccattgatcggtccttgcctgtggttatcaccttgggaaacggcgaaaagttggtggcgcaatcctttgtcctcctggaaactgcaagtcagttcagtgagatacagaagtacacagacgaggaatgcaatgccaacaatattatgaacagcacggtgaaggggaaaatagccttctgcttcatgggagagatgttgaataataagcagcagacatcataccctgatgtcaccacggcagtggcagccaaaggaggcagagcaccggacattgctgcaccaggggtttcgattttagccgctgctcagattccatattacaaaggtgtttcctaccatttcgattctggaacatctatggcttgcccccatgtagctgggatcattgcggtgctcaagtccattcatccaaaatggtcacctgcggctctcaaatccgcaatcatgacaacaggctttgtttggaacgtagagatttgcgattatatatatttcgttcaacaatcggctcacttgattgaccttattggatttaaagaactagccaacaacttgtga</cdnaseq>

Protein Sequence

<aaseq>MSNEKVPSNAPIAPQEGNAPQNSGSNKHPGASSEETWRTPSDPF PMEITQVAPRDDDPDYIPIEQAMVVRRRSKRKAGRNRTEQEVEMDTATSAPERTETST SAGGSGKKRRGERSKNKLPKETYNVIALDQDGKPIEPPIVRSKFSNACGTLVRTRCPI NVKLWETVDDNIKTLLWNELQKYFVFPPGSEVRGRDYALKKMGDRWRQWKSDLNRDYV QKNLPPFTDYGHISQADWDTFVADRTTAEALALRKKMSELAKKNKYPHRLGSSGYAGH VDQWREIEQRFAAAGKPLLVDPMVERSKNWVWARSTGQVSDEGDILFETPDIEEVTTN LQQIVEKERSGQFVPRRERDQLTAALGTAEHSGRVRGLSSKTSWKVGFPQDAPSYKKR DKYKEQLSDKIYAQVKEHFYSLAAENPTAFPRLFPDSQQPTQSAQQTTNVPSSVGSVQ TSTFPVDSITGPTPCSLVVPIGRAGKTKEVATGLAIPGRQFHNTAIPEDYARVQVAKV HSDHVSLELDIPAPEGIELLGDAVNQFILWHRRDIILSAAVLAAGSSTPSSSQAMTAA APAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPTPQPVQASPTSPTKQH APPAPPSVQTSPPTPQSALVEEVHIPDGTTSEPKSNTLEPRRIIPKLISTYDPKEIDK DKEKFMFSAFRNSEKRKELAHVLSDSQKSVLAAQDEVQSWLSADVPETYEYGKPFLPT YLMNKLPWEMRVMHEWYMKASRKGLGFISVAVPEGAFMSGPNGIFFISFQDLYALYKL DKMDVNLVAAFCLMQFHEADRTGAKVGYVDPTRICKTQHTIELRQDCEQLVGKTPEEK EEYVKTLHKRKKLEVATYLAIAMLAHADKDVLMVPYQFTDHYILFLVYPKDQLIISLD PAHYDKETFMEFLTILNLAHKYYRKRGGPVHIPSQKKLSVRTGWPIPEIPYIAQRFNH TTILNVAADLCRFIRRDVCNARGVTPESASFADTGYDPPPKKWKGICQVGPSFEAISC NRKFIGARWYIDDEILSSISDNEVLSPRDVEGHGTHTASTAGGNIIHNVSFLGLAAGT VRGGAPRARLAIYKACWSGYGCSGATVLKAMDDAVYDGVDVLSLSIGGTKEDVGTLHV VANGISVVYAGGNDGPIAQTVENQSPWLVTVAATTIDRSLPVVITLGNGEKLVAQSFV LLETASQFSEIQKYTDEECNANNIMNSTVKGKIAFCFMGEMLNNKQQTSYPDVTTAVA AKGGRAPDIAAPGVSILAAAQIPYYKGVSYHFDSGTSMACPHVAGIIAVLKSIHPKWS PAALKSAIMTTGFVWNVEICDYIYFVQQSAHLIDLIGFKELANNL</aaseq>

Gene Sequence

<dnaseqindica>1..198#289..2522#2608..2859#2940..3050#3140..3221#3496..3601#4342..4955#5084..5151#6047..6185#6654..6843#6879..6982#atgtcgaacgaaaaggttccatcgaacgcaccaatagcgcctcaagaaggtaacgctcctcaaaattccggtagcaataagcatccaggcgcttctagtgaagaaacgtggcgcacaccaagtgacccgtttccaatggaaataacacaagtcgccccccgcgatgatgatccggactacatacctatcgaacaggccgtaagtgatgaaaatcgttagccatgtattattccctaaatatgatgtgacatgaacctaatggtgtatagagttacctattctgtgcagatggtagtccgacgccgctcgaaacgtaaagccgggaggaacaggacagagcaagaagttgagatggacaccgctacgtctgcacctgaacgtacggagacatctacaagtgcaggcgggagtgggaaaaaaagacgtggtgagagaagcaagaataaattacccaaggaaacttacaacgtgattgctctcgatcaggatgggaagcccatcgagccaccgatagtgcggtccaagttcagcaacgcctgtggcactctagtcaggacgcgttgtcccattaatgtcaagttgtgggaaacagtggacgacaacatcaagacacttctctggaatgagttgcagaagtattttgtgttccctcctggatcagaggttagggggagagattacgcacttaaaaagatgggagatcgatggcgacagtggaagtccgatctaaatcgggattatgttcagaagaatctcccaccgtttacggattatggacatatatcgcaggctgactgggacacgtttgttgcggatcgtacaacagctgaagcattggctttgaggaaaaaaatgtccgagctcgcgaagaagaacaaatatccccatagattggggtcgagcggatacgctggtcacgtcgatcaatggcgggagatcgagcaaagatttgccgcggccggtaagcccctgctggtagaccccatggttgaacgtagcaagaactgggtttgggcgcgcagcacaggtcaagtctcggatgagggagacatactattcgagactccagacatagaagaagtgactactaatttgcagcagatagtcgagaaagaaagatcaggacagttcgtcccacggagggagagagatcagcttactgcggcgttggggacggctgaacactctggacgtgtaaggggtttgtcctcaaagacaagttggaaggtcgggtttccacaagacgcaccaagttataagaagagagacaaatacaaagaacaactatcggacaagatctatgcgcaagtgaaggaacacttctactcgttggcagctgaaaacccgacagcatttccaaggttattccctgatagccagcaacccacacaatccgcacagcaaacaactaatgtacccagcagtgtaggctcagtgcagacaagtaccttccctgtggatagtataactggaccaactccgtgcagtctcgtcgtaccaatcggccgcgctggaaagactaaggaggttgcaacgggtttagcgatacccggacgtcaattccacaacacggcaatccctgaggattacgcaagggtacaggtcgccaaggtccatagcgaccacgtttccttggaactagacatacctgcacctgaggggattgaacttctcggtgatgcagtgaatcagtttatcttgtggcaccgcagagacataatcctgagcgcggccgttcttgcagcaggatcttcaaccccatcctcatcgcaggcaatgactgctgccgctcctgcaccaccgtcgcctcctgaaccaccgtcacctcgacatccgccgtcaccaccaccgcttaggtcaccgcctcgccaacctacaccaccaccctccccttctcaacaaccgcctctcccgaccccgcaaccagttcaagcctctcccacctccccaactaaacagcatgctcccccggctccgccctcagttcaaacctctccacctacaccccaatctgctctggtagaagaagtgcacataccagatggtactacatccgaaccaaagtctaatactttggaacctcgtcgtataattccaaagttgatatcgacatacgacccaaaggagattgacaaggataaggagaagttcatgttttcagctttcaggaattctgagaagagaaaagaacttgctcacgtcttgtcagactcccagaagtcagtactagcggcccaagatgaagtgcaatcctggttatctgccgatgtgcctgaaacttatgagtatggcaagccattcttgccaacttatcttatgaacaagctaccatgggaaatgagggtaatgcacgaatggtatatgaaggcatctaggaaaggtctcggtttcataagcgtcgccgtcccggaaggcgctttcatgagtggtcctaatgggatattttttatctctttccaagacctttacgccctctacaagctagataaaatggacgttaatctcgttgcggctttctgtctgtaagtctaaactctttattacatgttgcacgtttcattcgaaacaactaaaccaaatctcatttcttctttattcattgtacagtatgcaattccacgaagctgatagaactggagcaaaggttggatacgtcgatccaacaagaatatgcaaaacacaacacaccatagagctgagacaggactgcgagcaattggttggcaagaccccggaagaaaaggaagaatatgtgaagacattgcacaagaggaagaagctagaagtagcaacatacttggcaatagcaatgttggcgcacgccgacaaagatgtcttaatggtcccctaccagttcacgtaagctctctcttctttttgtttaattaatttatcttcttcggaattttctgtctccaataagcctatcttatatgtagagaccactacatattattccttgtatatccgaaagaccaattgatcatatcattggaccccgcacactatgacaaggagacatttatggaattcctcactattttgaatttgtaagtgataaacatttcattactataaattgtttaggtcgatcaccagtcttctaactactaataaaacaattgtttccttcaaacagagcacacaagtactaccgcaaaagaggtggaccagtacatattccatcccagaagaagttatccgtcaggactggctggccggtactatcaaatttataccaatacaactaattatcgaatagtacatatatactaaatatatctactgagatcggtccccataattatatcgcagtgctacaaacaaccaccaggaaccaacttgtgtggttattacgtgtgcgagatgctcagagtaaatgggaggtacaaaacaaccagtaaccgagtaggtcatcgaactcttctctacaaagaaacccatctcgcacacacttctcactgagtaccgttttattttcctttctgtgtgcagatccccgaaatcccatatattgcacaacgattcaaccacactactatcttgaacgtggccgctgacctctgccgattcatccgtcgcgatgtctgcaacgcaagaggtctcttctacgacaaccagagtgaactcgcaatggacgacaaatttaaacctctcagagagtgggagaaagaacatatgcaataacatgtacactacttatacatatgatgaaaaaactgtgccacttgtattatatatttgtatgtaaattacaattgaattaatggttatgtattacatgtttgttactgcggcacttgtcttatcttatatgcttactactccgaaatacgataataaatccctcaataatttaatattaattacgaatcaccaaaatgctagaataaatattattttagctattcggaaattgaatttcgcatgcggtctacttaagacgcccgcatgcgaaaatagatcttcgcatgcggtcttcttaggtcgaccgcatgggaaaatatatcttcgcatgcggcttcttatatggaccgcatgcgaagatctattttcgcatgcggccgtcttaagtgaccgcatgcgaagatcaatcttcgcatgcggctgcgacggccgcatgcgcaaatggtgatctttgcagaccatttcgcgcatgcgggccggccaaccgcatgtgaagatcgattccgcccgtatgaaaaacgctttctgtagtagtgctctatcatcaccttaattaattgtacttttgaatgaaatagtcggtacatgcaacttgataactgtgatttatcaaataatatttagaattttaattaatttgctattttcttataggtgtcacgcctgagtcagcaagctttgccgatactggatatgaccccccgccaaaaaaatggaaagggatttgccaggttggcccatcgtttgaggccataagttgcaaccggaagtttatcggtgcacggtggtacatcgatgacgagattctaagtagcatatccgataacgaggttctttctcctagggatgtcgaaggccacggcacgcacacagcctcaacggctggcggcaacatcatccacaatgttagctttctggggctagctgcagggacagttcggggtggagcgccccgtgcacgattagccatatacaaggcctgttggtccggttatggctgctccggtgccaccgtgttgaaagccatggacgacgctgtctatgatggtgttgatgtcttatcactttctataggtggtacaaaagaagatgtgggaaccctacatgtcgtcgctaatggtatctcggttgtctacgctggtggaaacgatggtcccattgctcagacggtggagaaccaatcaccatggctagtaacggtcgctgcaaccaccattgatcggtccttgcctgtggttatcaccttgggaaacggcgaaaagttggtggtatgtttgtattaattagataaataatatatatgtgtccgacgatataatgccagctgtttgcaatttgtttatcgatcatgcattaatttgattatctccatctcatctctgacgacacttcgcaggcgcaatcctttgtcctcctggaaactgcaagtcagttcagtgagatacagaagtacacagacgaggagtaagtgtagtagctaggaaatcaatactaattaccatatgattcaatacatatacatttttttcaattaagataatagaaaaattctggcctttacctagaagtaagctcaagtcaaattgttatttcgtacccctccgttttataatttcatattataagttgtttctaatcaaagttttataagtttataaccaaatttacaaaaattgatatagtaatattttaaatataaaacaaacatattattaaaatatattcaatgttaaatttaatgaaactaatttagagttgtagatgttgctaatttttttataaatttggtcaaacttaaagatgtttgaataagaaaaaaaagttaaacgacttataatacgaaatggaggtagcgagtagcacatatatatgtcataatttggatggcaagatattgctaagagcaaatcctattgcgaaatcttcatccataattgacaaagagctatgtaaccatcatctctatataaagacatgcgtacttcatcttatcgtttgtccttctcaagtagtaaactttagtggaatcagccatatacaaaataatactacctccgttttataaatagatgatgccgttgactttttctcacatgtttgaccattcgtcttatttaaaaaatttacgtaattataatttattttgttatgagttgttttatcactcatagtactttaagtgtgatttatatcttatacatttgcataaaatttttgaataagacgaatggcctaacatgtgagaaaaagttaacggcgttatctatttaaaaaacagagatagtatatcatatataaaaacatcatgtactagctaggtagtgtataaaatgatttgctgctgctgctgctgctgcagatgcaatgccaacaatattatgaacagcacggtgaaggggaaaatagccttctgcttcatgggagagatgttgaataataagcagcagacatcataccctgatgtcaccacggcagtggcagccaaaggaggcagagcagtcatcttgccgctgttctacaccgaaacaattctccaagatgatcccatcatcactgatttggatattccgtttttttatatctttttttttgcaattttatggaacttaaatggtattcatacacacaattatcaaggagttaaggattggtattgtcattttacagttttattttctttaaggtgggaattcctagatttttctaattagtgtataatttctctcttctaccttctagaaataaataaggtggtaacttaattttagaaggatctgcaactagtacaaataaataaagaaaggcaatttcctaatagatggagtactctatttcagatgcattaatttttttcttttgcaagaaaatttaattaacaatttcttcaatcaacaagaatgttttcacctgttttctcatcagacaatgttctgttaacataacacggcattctcccaaatttgcagccggacattgctgcaccaggggtttcgattttagccgctgctcagattccatattacaaaggtgtttcctaccatttcgattctggaacatctatggcttgcccccatgtagctgggatcattgcggtgctcaagtccattcatccaaaatggtcacctgcggctctcaaatccgcaatcatgacaacaggtaattaattatctcttttttttttataacaaaaggctttgtttggaacgtagagatttgcgattatatatatttcgttcaacaatcggctcacttgattgaccttattggatttaaagaactagccaacaacttgtga</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0120000, RefSeq:Os04g0120000