Os05g0164900

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Revision as of 10:08, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0164900| Description = Galactose oxidase, central domain containing protein| Version = NM_001061278.1 GI:115462286 GeneID:4337909| Length =...")
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Gene Name

Os05g0164900

Description

Galactose oxidase, central domain containing protein

Version

NM_001061278.1 GI:115462286 GeneID:4337909

Length

6463 bp

Definition

Oryza sativa Japonica Group Os05g0164900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:3791353..3797815

Sequence Coding Region

3791663..3791752,3791840..3792026,3792134..3792235,3792314..3792390,3792831..3793030
,3793117..3793462,3793905..3793961,3794097..3795875,3795981..3796162
,3796385..3796514

Expression

GEO Profiles:Os05g0164900

Genome Context

<gbrowseImage1> name=NC_008398:3791353..3797815 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:3791353..3797815 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcaggggcagcatctaaacagccagactgtggatcttgcccgcaatcttcgggaaaaccagctaggaggagtgatatttggttgcaagcacaatacaatcgaggaatgcttcgaaaaacagctatttggtctgccttcagtccactattcatatgtgagaaatgtgaaacctggactacctttattcctattcaattatagtgacagaaagcttcatggcattttcgaggctgcaagtcctgggcagatgtgtattgatccatatgcgtggagtcatgatggttctttgaggacttcttttcctgcacaggttcgtatctgcacgaagactcgttatccaccattgatggagagccaattcagaacagtgcttggtgacaactattataaccaccaccacttctattttgagctagaccatgcccaaacaaaagctttgattgctgtgttcaaatcacttgctcctgccaatttcacgcaagttccagcggtttcgagcaaaaggactattgcacctttaccatcaactaaaaggcaggcacctgttatccctgaccaaaagaaagggtcagccagtccaaaggacatcaatccgtttagtgttctgtcacaatcaggtggtgctgttaaagataactgggctgattctgatgtggagaatggcagtattagcagaagttcagatgagaaggaatctagggagctagtttctgattgggaggatttggatgacaatgttcttcacggccaacttggtctttgttcaaatccagatgagatcagtcaaaactcctcatacaacagtgttgctaagggagcggagtttgtggaatgcagtcatttggttgtcaatcctgtgaatggaggaatccaaagttctgatggagacatgcttgtgatctcagatgatgtgcattcaggtgctgtgggtgttgatgggatagagagtgggggtcagaatgaaccagatgatgtctcgatacagcctgaaagactgtccatcctgcaaaaacttaaggagttgtttgttctacgacaacaggcagtgctatctgatcaaaatcttgcatattctaattcagatgaatatgcacctgaagaaacacaggccaatgtgagcctttcttgtccagagcaatgtgcacctgaagaaccacaggccaatacaaccccttcttgtccagagctacatgtacttgaagaaacacaggccaatgtgagccttctttgtccagagcaatatgtacctgaagaaccacaggccaatgcaagcctttcttgtccagagcaacatgtacctgaagaaccacaggccaatgcaagcctttcttgtccagagcaacatgtgcttgaagaaacacagcccaatgtgagccttccttgtccagggcaatatgtacctgaagaaccacaggccaatgcaagcctttcttgtccagagcaacatgtacctgaagaaatacaagccaatgcaagccttccttgtccagatcagcatgtacctgaagaaccacaggatgatgcaagtttttcttgtccagagcaacatgtacctgaagaaacacagaccaatgcaagccttccttgtccagatcagcatgtacctgaagaaacacaggatgatgcaagcttttcttgtccagagcaacatgtacctgaagaaacacaggccaatgcaagccttccttgtcctggccagcatgtacctgacaatgcaagccttccttgtccagagcaacatgtgcctgaagaaacacagatcaatgcaggtctttcttgtccagatcagcatcttcccgaagaaacaaagttcaatgtcagtcttgcctatccagatcagcatgtaccagaggaaacacaggtcactgcaggcatttcttgcccagatcagcatgttcctgaagaaacacaggtcaatgcaagccttccctctccaaatcagcatgtaccagaagaaacaaaggccaccgcagccatttcttgtccagatcaacatgtaacacaggccaatgcaagcctttctcaacacgagttcggtgctaaggtggaagataatacatctcttgagcaaaatcaaggaaatgctgagctgataaaaatcgtccttgacttaatcaagaagactgattcattggatatgagacagaacaagtcccatgaagaaatactttctctgaaggaagtagttaaagactcgggaacaaaagtaaagcaactggaataccgtatagatgagttacaattcaaacttgactcttcactgtctcttgtcggagatgcatgtgatactctggacaagccatcgatattcctgataggtggttataatggtgtgtcctggttgtcatctcttgatgctttttcacctgagaaagacatactggtgcctctcgcaccattgagttctgctcgttcatatgcatctgttgctacattggagggttgcatattcgtctgtggtggtggggttggcgattcatttggtaacacagtggaatgctataatacaatgtgtaacgagtggatggcgtgcccctgtttgaacaataaaaagggaagtctcgctgcagtaagtctggatggaaaaatatatgctattggtggaggagatggaattgtaacttattcagatgttgagatgtttgatccttttcttgggaagtggatatgcagcccgtctatgatgaactctcgatttgctcttggtgcggcagaaatgaacagtgtcatctatgctactggtggatttgatggtttcagctacttacaatcagcagaaaggtatgacccaagggagggtttctgggcccggcttccaagtatgaatgtaaggagaggatgccacactgtagctgcccttggaggagtcctgtatgccattggagggtataatggggatagaatggtgtctagcgtagagatctttgacccacgtcgcaactcctggagggtgggtgatcccatgaactttccaagaggatacgcctctacagttaccctgggtgacaatgtgtttgtcattggcggtctacagtcgagtgaaaagtttatggattctgtggaagtttacaatgtgaaatgcggctggtcagttcctggtttcagctcgattggggtgaggtgcttcgcgtctgctgctgtcgtttaa</cdnaseq>

Protein Sequence

<aaseq>MQGQHLNSQTVDLARNLRENQLGGVIFGCKHNTIEECFEKQLFG LPSVHYSYVRNVKPGLPLFLFNYSDRKLHGIFEAASPGQMCIDPYAWSHDGSLRTSFP AQVRICTKTRYPPLMESQFRTVLGDNYYNHHHFYFELDHAQTKALIAVFKSLAPANFT QVPAVSSKRTIAPLPSTKRQAPVIPDQKKGSASPKDINPFSVLSQSGGAVKDNWADSD VENGSISRSSDEKESRELVSDWEDLDDNVLHGQLGLCSNPDEISQNSSYNSVAKGAEF VECSHLVVNPVNGGIQSSDGDMLVISDDVHSGAVGVDGIESGGQNEPDDVSIQPERLS ILQKLKELFVLRQQAVLSDQNLAYSNSDEYAPEETQANVSLSCPEQCAPEEPQANTTP SCPELHVLEETQANVSLLCPEQYVPEEPQANASLSCPEQHVPEEPQANASLSCPEQHV LEETQPNVSLPCPGQYVPEEPQANASLSCPEQHVPEEIQANASLPCPDQHVPEEPQDD ASFSCPEQHVPEETQTNASLPCPDQHVPEETQDDASFSCPEQHVPEETQANASLPCPG QHVPDNASLPCPEQHVPEETQINAGLSCPDQHLPEETKFNVSLAYPDQHVPEETQVTA GISCPDQHVPEETQVNASLPSPNQHVPEETKATAAISCPDQHVTQANASLSQHEFGAK VEDNTSLEQNQGNAELIKIVLDLIKKTDSLDMRQNKSHEEILSLKEVVKDSGTKVKQL EYRIDELQFKLDSSLSLVGDACDTLDKPSIFLIGGYNGVSWLSSLDAFSPEKDILVPL APLSSARSYASVATLEGCIFVCGGGVGDSFGNTVECYNTMCNEWMACPCLNNKKGSLA AVSLDGKIYAIGGGDGIVTYSDVEMFDPFLGKWICSPSMMNSRFALGAAEMNSVIYAT GGFDGFSYLQSAERYDPREGFWARLPSMNVRRGCHTVAALGGVLYAIGGYNGDRMVSS VEIFDPRRNSWRVGDPMNFPRGYASTVTLGDNVFVIGGLQSSEKFMDSVEVYNVKCGW SVPGFSSIGVRCFASAAVV</aaseq>

Gene Sequence

<dnaseqindica>6064..6153#5790..5976#5581..5682#5426..5502#4786..4985#4354..4699#3855..3911#1941..3719#1654..1835#1302..1431#gcactgcgctgcagccgcggctgctactgctacacgcaaccaaccccctcacacacacagtcaccgcaacgcaaggagaaaaaagcagcgaagcggaggaagagagaaagaaagcgacgctgctttttcttctttctttcttccaaccactccgggatcggggagcgaatcaaatatcattcgccgaggcgagtaaaaaccccaatctctcgcttttactctcctcctcctcctcctcttcttcctctccccacctcggctgcggcggcggaggcggaggcgaaaccctaggaggagctagccgcatttgctcctcgggggtggtgttctgggcgtctcttcgatgtgagtagcctgatcgggatcgccagttcgttgcgggtttcggtgttgcgtggttggggtagatgtttacttcgtttgtagcagtttggtttgccgagatttttggggggatcgacgtgttcgacgactgggtgtgtgtgggtgtgggttttgtttgggttgaagggtttttgcgttttggtgggtgggtgtggttagggttttagctgggtggaggtgggtgatctgtgcgttgatcgcgatggctggggggcactgtttcctcacgggggtttttgttttgtttcggttcgatcgcttggttgttactccccgtgattgtttatgatctggttgcttctgattggctacatgctggtctcgcgttttaaattttttttgggggaacttttgtggtttcctttaaatcggaacagaagtttcaaaatttcgagctggttttgcacgtttttttttttaaaaaaaatttcggttagatcgttgaggttattacgccccgggattatttatgatttggttactgttgattggctacatggtgggctcatgtttgcccttttgtttcgagggggaaattttgtggttttccatttaaatcggaaccaaagtttgcaaaatttcaagttgtttcggcacgggattttgtttcggttcgatcattcggttgttacgacctgtaaatttttctggattggttgcttttggttggctacgtggggagtgggggtgctcttctttgtcttttttttttttgcatttagatcggaattttgtttttcaaaatatcaagttgtttgcacgttagagagggcatatgttaacgatgattggagccactgtacttcaattctgtgatagagatatgagttgcatatacgaatgcttccccagtgtttttaattttatacctttgaatctacagggtgctggaggagagagaggccaacggtctcacaatgcaggggcagcatctaaacagccagactgtggatcttgcccgcaatcttcgggaaaaccagctaggaggagtgatatttggttgcaagcacaatacaatcgaggaatgcttcgaaaaacagctatttggtttgtcaaatccacctttcacctcttgttttgaacacatctgtcatttctcacatttgtataatttggtgattgacagcgtcatgtttgttttgtatatgcattactatcctttacaatcatggtgtaattgtggggtttgtgaagtatagactagctaagcattgaaactttgtttgatttcacatcttaatcagtttctgcatcttgcttgttttacaggtctgccttcagtccactattcatatgtgagaaatgtgaaacctggactacctttattcctattcaattatagtgacagaaagcttcatggcattttcgaggctgcaagtcctgggcagatgtgtattgatccatatgcgtggagtcatgatggttctttgaggacttcttttcctgcacaggtatcacaaaattatgaatgtctaaataactggcacagtttatttgatctgtagttaagttccagttcatttctactaatgaaaaatggccatttgtgttttaaggttcgtatctgcacgaagactcgttatccaccattgatggagagccaattcagaacagtgcttggtgacaactattataaccaccaccacttctattttgagctagaccatgcccaaacaaaagctttgattgctgtgttcaaatcacttgctcctgccaatttcacgcaagttccagcggtttcgagcaaaaggactattgcacctttaccatcaactaaaaggcaggcacctgttatccctgaccaaaagaaagggtcagccagtccaaaggacatcaatccgtttagtgttctgtcacaatcaggtggtgctgttaaagataactgggctgattctgatgtggagaatggcagtattagcagaagttcagatgagaaggaatctagggagctagtttctgattgggaggatttggatgacaatgttcttcacggccaacttggtctttgttcaaatccagatgagatcagtcaaaactcctcatacaacagtgttgctaagggagcggagtttgtggaatgcagtcatttggttgtcaatcctgtgaatggaggaatccaaagttctgatggagacatgcttgtgatctcagatgatgtgcattcaggtgctgtgggtgttgatgggatagagagtgggggtcagaatgaaccagatgatgtctcgatacagcctgaaagactgtccatcctgcaaaaacttaaggagttgtttgttctacgacaacaggcagtgctatctgatcaaaatcttgcatattctaattcagatgaatatgcacctgaagaaacacaggccaatgtgagcctttcttgtccagagcaatgtgcacctgaagaaccacaggccaatacaaccccttcttgtccagagctacatgtacttgaagaaacacaggccaatgtgagccttctttgtccagagcaatatgtacctgaagaaccacaggccaatgcaagcctttcttgtccagagcaacatgtacctgaagaaccacaggccaatgcaagcctttcttgtccagagcaacatgtgcttgaagaaacacagcccaatgtgagccttccttgtccagggcaatatgtacctgaagaaccacaggccaatgcaagcctttcttgtccagagcaacatgtacctgaagaaatacaagccaatgcaagccttccttgtccagatcagcatgtacctgaagaaccacaggatgatgcaagtttttcttgtccagagcaacatgtacctgaagaaacacagaccaatgcaagccttccttgtccagatcagcatgtacctgaagaaacacaggatgatgcaagcttttcttgtccagagcaacatgtacctgaagaaacacaggccaatgcaagccttccttgtcctggccagcatgtacctgacaatgcaagccttccttgtccagagcaacatgtgcctgaagaaacacagatcaatgcaggtctttcttgtccagatcagcatcttcccgaagaaacaaagttcaatgtcagtcttgcctatccagatcagcatgtaccagaggaaacacaggtcactgcaggcatttcttgcccagatcagcatgttcctgaagaaacacaggtcaatgcaagccttccctctccaaatcagcatgtaccagaagaaacaaaggccaccgcagccatttcttgtccagatcaacatgtaacacaggccaatgcaagcctttctcaacacgagttcggtgctaaggtggaagataatacatctcttgagcaaaatcaaggaaatgctgaggtatgtgtcccattcctttctgttcgcctgttccctagtcttcattatctgattacacttgataacccagtgactcacatgatgcttgttgttgtgcagtattctcacatcattttttttttcacttgtctacagctgataaaaatcgtccttgacttaatcaagaagactgattcattggatatgagacaggtctgccatttgttcctgagcacttgtgatgtaaaagttgttcggaggtttatttcattgttggatagaaacatacaaatgagtggtgctgtggggcttgacagtatgttctcaatagttacaaggaatcacagatgtccaatgtggtttctttttaccaaattttctaattgtggctactattgatattggttcaagtagcacataaatttctttggtgtgaacatgaagttttcttttaagggccatttagcttgtctatacaatatttttctttcttgcagaacacaaactgacctgcacacctgtagttggccatcttacctttctttttactgccagatgctggatgtattcacgatcaaaactgtctagctaccattctagatgcaaatgctggatacttaggttttttactaatcattgttctgtaattttccagaacaagtcccatgaagaaatactttctctgaaggaagtagttaaagactcgggaacaaaagtaaagcaactggaataccgtatagatgagttacaattcaaacttgactcttcactgtctcttgtcggagatgcatgtgatactctggacaagccatcgatattcctgataggtggttataatggtgtgtcctggttgtcatctcttgatgctttttcacctgagaaagacatactggtgcctctcgcaccattgagttctgctcgttcatatgcatctgttgctacattggagggttgcatattcgtctgtggtggtggggttggcgattcatttggtaacacaggtatgtcatggtattttgaatgtgctctgtcaacttcttttctattagcttcaaattgcagttacttacgcattttctttgtgtagtggaatgctataatacaatgtgtaacgagtggatggcgtgcccctgtttgaacaataaaaagggaagtctcgctgcagtaagtctggatggaaaaatatatgctattggtggaggagatggaattgtaacttattcagatgttgagatgtttgatccttttcttgggaagtggatatgcagcccgtctatgatgaactctgtatgttatcaggctcttttacttgcttctaacgattgtcttgtttcgagtattttgcaacctgctttgtagtaaaacttatactctaccctagtcagcatcatgattgcattttgatcatctttatgaccttataacgataagttaggacatgcatttattttagaacatgtaattttaggacatgcatttattttagaacatgtaatttagtttcagcataacagcatagcttttcagaaaaattatgtacgacactgcactgcaacctccattgcaggctgtaacatagttgttgctacataatggcaggatagcaggaaagggtcattgggttttttctttttcttttctaatgttggtggttatcaaaagactggtcgagtaagatgaattatcttgacactaatatatattgtacattctgctatatgttacagcgatttgctcttggtgcggcagaaatgaacagtgtcatctatgctactggtggatttgatggtttcagctacttacagtaagatattttgtcaattttcctccatgtttttacatgatttagtttcttagaagataacaaacatgccacatacagatcagcagaaaggtatgacccaagggagggtttctgggcccggcttccaagtatgaatgtaaggagaggatgccacactgtagctgcccttggaggagtcctgtgagtaatttcctcgtgtacattacgtgttattgaacaaggaagaaatgattgctgtcttgcttaaatcttgtaaagaaactcatgtattggctctgacttttcaggtatgccattggagggtataatggggatagaatggtgtctagcgtagagatctttgacccacgtcgcaactcctggagggtgggtgatcccatgaactttccaagaggatacgcctctacagttaccctgggtgacaatgtgtttgtcattggcggtctacagtcgagtgaaaagtttatggattctgtaagtagacccataccaaccatctttctccaaacttcacaattcccagctctcttttaaggatagtttctctgccctttgttacaggtggaagtttacaatgtgaaatgcggctggtcagttcctggtttcagctcgattggggtgaggtgcttcgcgtctgctgctgtcgtttaagcgtgttagaagtacagtgcttgtcccatctcatcagttctaacaattttgtgccatgcaaggaaacaaaccctaatcgtgttttccgacattttgagggtaaaaattgcccttctgctgtgattccagtttcgtgtacagcgaaagtcagcatagtatggagctctaggtagtcagtcacttgtccaaagtttagatcctcctttatatacctgaatattcacctactgttgagaaacaccctgttttatcaggtaccatgtaaatctcttggaatgcattccggctaaaaattctgaacttattaatc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0164900, RefSeq:Os05g0164900