Os04g0201000

From RiceWiki
Revision as of 19:49, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0201000

Description

Conserved hypothetical protein

Version

NM_001186859.1 GI:297722848 GeneID:9272060

Length

3393 bp

Definition

Oryza sativa Japonica Group Os04g0201000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:6883162..6886554

Sequence Coding Region

6883162..6885489,6885511..6886296,6886546..6886554

Expression

GEO Profiles:Os04g0201000

Genome Context

<gbrowseImage1> name=NC_008397:6883162..6886554 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:6883162..6886554 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgaggtaattaccgcagagaatgttgctgaggctgttgatagtataattgacaaactaaagaaatcagatgtatcaaatgtggtctattttgatggttgggaaggattgggtgtatctgctgtcctcagagctgttgccgaacggcttacactgggccagatcacggacccagaattgaggtttgaaaagataatccacattgattgctcgaggtggaaaagcataagggaaatgcagaggaaaattgcagagaaactagagatgacccaagcaaaagatcttattgatgagcaggatgaggctgatgatatcaatggaaaagatgaaagctccagagacgtgatcaatgatgttggaatagctgttaatgatgtcctaatgagtggaagatttcttgtggtttttcataatgggagtgataatgaaataaaagatgtaactaattttggtctgcctctatatcagctgtataagggaaacaaaatattgtggaccttcaggggcaggtttcggctgagtaccaaaattcaggacaaggtgcaaaaggcagatgtttttcttgctgccgaattccataacaaaatatatgggatggagttccaggatcaaagccattggtgggatatattgtgtgaggaggcggcagaaattgcttccaacacatgttccggagtagccaagctgcaccctacaacaattgccaaatgttggttgtatatatcgaaacttaattttgttggcagagacatcattgactatgactgggcagttcatgcttcaaactattgggaatgggagattgctgatgctctacaacaagagatgtggcaagaatgggacgaccctggactttaccacatgatgcggaacactgacaactggatttcaacaagtcacctgatttcaagtaattatgggttcctggctgcctcagcagtggctcaaacagtgtcatcatttttcttggcagaacaccaaattgacacagaatcaaaagacacggtggaactagtagaatatttttttaagtcaaagctcaaccctgcacatcttttacaaaattataatgacatgtttcaacatgcagagaaccttagagtgctaaaacttagcctctgtacctttagatttgcttcacctcctttcctctgttgccgcggattgagattccttgggcttgataactgccttgatctgaacattgatgctggagaggaggttcagtcttggaactgttttcatggtttgtgggtgctagacctacagtacacacagtgggttttctccccacagatgattgaggaaatgaacaatgtcagggagctcaatgttaagggagtgaaactgcacaacttgagacatatttggaaacggcagcataacaagatacagaagcttcgtgtaatcaagacgattgatcaagactatacggcaaccaaagatgaaaaggatccattcacattcacattctcaggtatggaaaagatggagattctagacttgtcaggtaactctaccatgcaagcttttcctgacctgtccaaggcaacatgtctgaagactgtcactcttgatggttgtgttgggttggattctgtcagtgatagcaaccttccggtatcacttgaggaattcagcttagttgcagcatcagaacagtatccaaaggcagcaaatattacaaaaatctcattatctggatgttgccggttaaaaaagctaatcttgagtggactgccaaaacttgaggaattggatctttccggcacaatattggaaaaacttgacctggatgccatgcaggcagaaaaacttaatcgtcttcttctgtttggttgtctgcatctttgtgcaataaagtggtcagatgttacaaaaccacaattggatgagttacatgtagatacagttggagtacatctggaaggcaaacgacaaaatagcttgtcacctgtccaggatgatgataaattattccaatcacatgttgttatcatggatcctaggcttcttcggtttctacagttgtttgcaatgcaaagtcaccatgtgcatttctgcatgtcacctgtttttgttaattattgcaaagatgaaggacaaagtaagcagtgcagtagtgaacaaataaggaatgcccatgttgatcgaacagttgcagggaatatgtgcagtgatatatttgacagagttgttgcacttagtgttgcccctgtgatttgtccttgcccgcctctgcctttagagtcaaagtgcaacagaagctgcaaggtagagatcagaaacagaaaacaattgcaggggaatgacaatatcttgggaaatttcatagacattgtacactctctaaacgtgcatgatgactcttggatgactagtattcctggatcaaattggggtcggattaagtggtgctgtattgagagatgccccaagttacattctgtattcaaactcagagaccatgaccaaatcgtagctttctcttggctagagaccttctgggcatcacatctccaaacagcccactgcatttggagcatggaagtcaagcatgtaaatgttgattccttcaagaaactgcagtatatacatctggattcctgtcctaggctcatccatgtacttcccttgtccaacaacttaccaagcttggagaccattcagatcctgtactgcaccagcctcatatatgttttccctttgaacacagcaaactccaaggggacagtaagcaatgatgctattgatttcccaaagctgaagcacgtccacctgcatgagcttcccagcttgaaagggatatgtgaggcaaaaataatgtcagctcccatgctggaggccatcatgatcaggggctgctgtagtcttagacacctgcctgacgtccaaggattgcatgaaccaagacccatagtatactgtgagaaggattggtgggataacctagtgtggcctcagaaagaaggtggctatgatcagtcattgctctacaagcggcagtcagcgcaatactataagaaggccttgcccaaaggctctattctcaggtcaaatctatccacatacctctataagccaataagcaaaaaatattctatagatttgcatggctag</cdnaseq>

Protein Sequence

<aaseq>MDEVITAENVAEAVDSIIDKLKKSDVSNVVYFDGWEGLGVSAVL RAVAERLTLGQITDPELRFEKIIHIDCSRWKSIREMQRKIAEKLEMTQAKDLIDEQDE ADDINGKDESSRDVINDVGIAVNDVLMSGRFLVVFHNGSDNEIKDVTNFGLPLYQLYK GNKILWTFRGRFRLSTKIQDKVQKADVFLAAEFHNKIYGMEFQDQSHWWDILCEEAAE IASNTCSGVAKLHPTTIAKCWLYISKLNFVGRDIIDYDWAVHASNYWEWEIADALQQE MWQEWDDPGLYHMMRNTDNWISTSHLISSNYGFLAASAVAQTVSSFFLAEHQIDTESK DTVELVEYFFKSKLNPAHLLQNYNDMFQHAENLRVLKLSLCTFRFASPPFLCCRGLRF LGLDNCLDLNIDAGEEVQSWNCFHGLWVLDLQYTQWVFSPQMIEEMNNVRELNVKGVK LHNLRHIWKRQHNKIQKLRVIKTIDQDYTATKDEKDPFTFTFSGMEKMEILDLSGNST MQAFPDLSKATCLKTVTLDGCVGLDSVSDSNLPVSLEEFSLVAASEQYPKAANITKIS LSGCCRLKKLILSGLPKLEELDLSGTILEKLDLDAMQAEKLNRLLLFGCLHLCAIKWS DVTKPQLDELHVDTVGVHLEGKRQNSLSPVQDDDKLFQSHVVIMDPRLLRFLQLFAMQ SHHVHFCMSPVFVNYCKDEGQSKQCSSEQIRNAHVDRTVAGNMCSDIFDRVVALSVAP VICPCPPLPLESKCNRSCKVEIRNRKQLQGNDNILGNFIDIVHSLNVHDDSWMTSIPG SNWGRIKWCCIERCPKLHSVFKLRDHDQIVAFSWLETFWASHLQTAHCIWSMEVKHVN VDSFKKLQYIHLDSCPRLIHVLPLSNNLPSLETIQILYCTSLIYVFPLNTANSKGTVS NDAIDFPKLKHVHLHELPSLKGICEAKIMSAPMLEAIMIRGCCSLRHLPDVQGLHEPR PIVYCEKDWWDNLVWPQKEGGYDQSLLYKRQSAQYYKKALPKGSILRSNLSTYLYKPI SKKYSIDLHG</aaseq>

Gene Sequence

<dnaseqindica>1066..3393#259..1044#1..9#atggacgaggtgggggacggtggctgcggcaacaagtctccacatcaccagcctcgcctacatcggcatacctagtttggtgacagctcaaagtggagtagcaaataaggatttccccccctctaaatatatagtttcatttttttttctctgaatatagtgttcatttgatttttcttcttctagacagtcgtgttactttgtacgcaacccagctgagctgagctaacctcagttaattactgttaaccactgcaggtaattaccgcagagaatgttgctgaggctgttgatagtataattgacaaactaaagaaatcagatgtatcaaatgtggtctattttgatggttgggaaggattgggtgtatctgctgtcctcagagctgttgccgaacggcttacactgggccagatcacggacccagaattgaggtttgaaaagataatccacattgattgctcgaggtggaaaagcataagggaaatgcagaggaaaattgcagagaaactagagatgacccaagcaaaagatcttattgatgagcaggatgaggctgatgatatcaatggaaaagatgaaagctccagagacgtgatcaatgatgttggaatagctgttaatgatgtcctaatgagtggaagatttcttgtggtttttcataatgggagtgataatgaaataaaagatgtaactaattttggtctgcctctatatcagctgtataagggaaacaaaatattgtggaccttcaggggcaggtttcggctgagtaccaaaattcaggacaaggtgcaaaaggcagatgtttttcttgctgccgaattccataacaaaatatatgggatggagttccaggatcaaagccattggtgggatatattgtgtgaggaggcggcagaaattgcttccaacacatgttccggagtagccaagctgcaccctacaacaattgccaaatgttggttgtatatatcgaaacttaattttgttggcagagacatcattgactatgactgggcagttcatgcttcaaactattgggtgtgtgatgggatcattcaggaatgggagattgctgatgctctacaacaagagatgtggcaagaatgggacgaccctggactttaccacatgatgcggaacactgacaactggatttcaacaagtcacctgatttcaagtaattatgggttcctggctgcctcagcagtggctcaaacagtgtcatcatttttcttggcagaacaccaaattgacacagaatcaaaagacacggtggaactagtagaatatttttttaagtcaaagctcaaccctgcacatcttttacaaaattataatgacatgtttcaacatgcagagaaccttagagtgctaaaacttagcctctgtacctttagatttgcttcacctcctttcctctgttgccgcggattgagattccttgggcttgataactgccttgatctgaacattgatgctggagaggaggttcagtcttggaactgttttcatggtttgtgggtgctagacctacagtacacacagtgggttttctccccacagatgattgaggaaatgaacaatgtcagggagctcaatgttaagggagtgaaactgcacaacttgagacatatttggaaacggcagcataacaagatacagaagcttcgtgtaatcaagacgattgatcaagactatacggcaaccaaagatgaaaaggatccattcacattcacattctcaggtatggaaaagatggagattctagacttgtcaggtaactctaccatgcaagcttttcctgacctgtccaaggcaacatgtctgaagactgtcactcttgatggttgtgttgggttggattctgtcagtgatagcaaccttccggtatcacttgaggaattcagcttagttgcagcatcagaacagtatccaaaggcagcaaatattacaaaaatctcattatctggatgttgccggttaaaaaagctaatcttgagtggactgccaaaacttgaggaattggatctttccggcacaatattggaaaaacttgacctggatgccatgcaggcagaaaaacttaatcgtcttcttctgtttggttgtctgcatctttgtgcaataaagtggtcagatgttacaaaaccacaattggatgagttacatgtagatacagttggagtacatctggaaggcaaacgacaaaatagcttgtcacctgtccaggatgatgataaattattccaatcacatgttgttatcatggatcctaggcttcttcggtttctacagttgtttgcaatgcaaagtcaccatgtgcatttctgcatgtcacctgtttttgttaattattgcaaagatgaaggacaaagtaagcagtgcagtagtgaacaaataaggaatgcccatgttgatcgaacagttgcagggaatatgtgcagtgatatatttgacagagttgttgcacttagtgttgcccctgtgatttgtccttgcccgcctctgcctttagagtcaaagtgcaacagaagctgcaaggtagagatcagaaacagaaaacaattgcaggggaatgacaatatcttgggaaatttcatagacattgtacactctctaaacgtgcatgatgactcttggatgactagtattcctggatcaaattggggtcggattaagtggtgctgtattgagagatgccccaagttacattctgtattcaaactcagagaccatgaccaaatcgtagctttctcttggctagagaccttctgggcatcacatctccaaacagcccactgcatttggagcatggaagtcaagcatgtaaatgttgattccttcaagaaactgcagtatatacatctggattcctgtcctaggctcatccatgtacttcccttgtccaacaacttaccaagcttggagaccattcagatcctgtactgcaccagcctcatatatgttttccctttgaacacagcaaactccaaggggacagtaagcaatgatgctattgatttcccaaagctgaagcacgtccacctgcatgagcttcccagcttgaaagggatatgtgaggcaaaaataatgtcagctcccatgctggaggccatcatgatcaggggctgctgtagtcttagacacctgcctgacgtccaaggattgcatgaaccaagacccatagtatactgtgagaaggattggtgggataacctagtgtggcctcagaaagaaggtggctatgatcagtcattgctctacaagcggcagtcagcgcaatactataagaaggccttgcccaaaggctctattctcaggtcaaatctatccacatacctctataagccaataagcaaaaaatattctatagatttgcatggctag</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0201000, RefSeq:Os04g0201000