Os05g0169000

From RiceWiki
Revision as of 10:08, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0169000| Description = Similar to Thioredoxin-like protein| Version = NM_001061293.1 GI:115462316 GeneID:4337927| Length = 3144 bp| Defini...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0169000

Description

Similar to Thioredoxin-like protein

Version

NM_001061293.1 GI:115462316 GeneID:4337927

Length

3144 bp

Definition

Oryza sativa Japonica Group Os05g0169000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:4115502..4118645

Sequence Coding Region

4115807..4115944,4116547..4116669,4117461..4117577,4117685..4117705

Expression

GEO Profiles:Os05g0169000

Genome Context

<gbrowseImage1> name=NC_008398:4115502..4118645 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:4115502..4118645 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggaggttgtgtgggcaagggacgacgacatattgaggaagacaagcttgatttcaaaggtggaaatgttcatgtcataacaagcaaagaggactgggataggaagattgaagaagcaaacaaggatgggaaaattgttgtggcaaatttcagtgcttcctggtgtggaccatgtcgtgttattgcacctatttatgctgagatgtcaaagacttatcctcaactcatgttcttgacaatagatgttgatgacctaatggatttcagctcatcatgggatatccgcgcaacgccgacctttttcttcataaaaaacgagaagcaggtcgacaagcttgtgggcgccaacaaacctgagctcgaaaagaaggttcaggcacttgctgatggcagctga</cdnaseq>

Protein Sequence

<aaseq>MGGCVGKGRRHIEEDKLDFKGGNVHVITSKEDWDRKIEEANKDG KIVVANFSASWCGPCRVIAPIYAEMSKTYPQLMFLTIDVDDLMDFSSSWDIRATPTFF FIKNEKQVDKLVGANKPELEKKVQALADGS</aaseq>

Gene Sequence

<dnaseqindica>2702..2839#1977..2099#1069..1185#941..961#gaaccgtctcctcctcctcctcatcctcttctccactgcccccgcacaaatcaactctactttccaaaacgcggcggcggcggcggatcaaaccctcatttggtgggattttttgctgcgtttaatcaaatcctctctctctcttcgaccgcggggagatccggggttcgattgtttcgtctcctcctccccctctcgtgcgggcgtcggaatcgatccacgccccgcccgctcgctcgctcgctcgctctgtgagcccaaggtagattcctcctgatccgtggccttcttctgcttcggctgtcgattcggcgtgctttcttggtttgcgacgttcatgggagggggtgttctactgttcttgggggttgggggaatggggagatatggttcttcatgtgtaccctactttgccttccattccattgggttccatggcgttgggatttcgatccttaaattgtggtagttgggagaagtagtactgtcattatgctttgtcttagtgaattatcgtatcggtgatagtttgtggaacaagaattactagcagagataatagagcagttctgggcattcctcgtgctcttaagagaggcagaattcgttatctgtcctttctttttttcggtgaattatcaatagggatgatttgccttcctagtctttattctgataggatcatcctatgctagaatgtctgcgagtttgttcacttgaatatatgatatcttgtcctatgcatttggtgtccattatcgcttatgatctattgttatgcctaactcagacttcaaccatgccttcctagattttagttttcttgcagtgctttcgtagttttagttgctctttttctgatagaccatgacatgcttttatcattgtttagaggacattttgctcagtgctgtgctagctttgttggctcaagttcacaatgggaggttgtgtgggcaaggtgagtcttccaaaaccataattgatatttagcggttcatcatggctgttcaatttaccacatatattgatttgtgatgtttcttttatttatgttcatttgttcagggacgacgacatattgaggaagacaagcttgatttcaaaggtggaaatgttcatgtcataacaagcaaagaggactgggataggaagattgaagaagcaaacaaggatgggaaaattgtaagcaagctagcaatttgctcaatggattacaaatacatcttttggttcttatgttgtgcattggttggtgatctatcagtttgcttcacactatacaactttacgaagttgatatctatgcactacttatcacatggtcctttcctttcctttctttttttttttaaaaaaaaagaagtgtaattatctaatgggattgagaacagactgaaatctgcatgagagtgaaaaaaaaatcagatattccagttataaagtcagaaataattcatgaaaactgcattcagatattctagctagtaccctgtgcaaaaagttgccatttcttagtattccctgatttatatagctttctgcctttagtcaatgcaagatccttgtgtggaataaatcatttctagttatgctgacgtgtagaactgctttttccattgttctagtttgtttctaaaagattcaaacctcatttgtaaattacttaggtctgttttatgttggttttatttctcatccaaaacaagttaaacaacattatgccatactcccagttattctgaatagcacttgcatgctcatccacttggtatttccttttttttttcctcaggatttgttttgcttatttttaggatgcctgcttgttttttggcaatacacacacaacatttacgactcatccactttagatggccattctgttgttggctgaaatctcgtaacaagataaagttatgaaaattcttgatgcaaactagtacctttgacgtactcactgttttgttttgtaggttgtggcaaatttcagtgcttcctggtgtggaccatgtcgtgttattgcacctatttatgctgagatgtcaaagacttatcctcaactcatgttcttgacaatagatgttgatgacctaatggtaattctaaccgtttgtttggtcaaatttgctattgaaaaatgattaatttcagttttgtatgaaccaagaaaccccttatacatctgatggcggtcattttatcaatagtatcatttatctgtaatcctgtataactgattgtgcatcctcactaaatgccatcgattaaggtttataatcaagaatagattgtgtactgagttccagatgtgttgaattatttgctgagggatatcatacccaaagcatgacctatcatcctacttatggagtaattgctgtcgacataccatgagaactttgaaaaaaaataagtttgtttggtgtctctgtatttttttggtaaagcttcttatatattggaaattatcatataaaggctaaacacatgttgcgcctgcactgttagcattatagcattataaagagcttctcaacacttctagaattaagtaaacagatgtagtgattgcatgcaaattgtcctaaagttaactgaagtcctgacattagagtagcttctcacttagcatatctataggtcagggtgcatgttgtaatgttcttccgatttaacaactctcttgtattctctgcaggatttcagctcatcatgggatatccgcgcaacgccgacctttttcttcataaaaaacgagaagcaggtcgacaagcttgtgggcgccaacaaacctgagctcgaaaagaaggttcaggcacttgctgatggcagctgaaccttattatagcgcaacggctagaactgaaacgaatttggcatgtctgtccggccaagtttgtgtccgtgtgctcccttgcagcttctagtgtatagttttggtgtctctgttcaaaccatgtttctttttctttctgaattttgcccatgtgtctggccacacacatatgcaatctgtgaactaagaagttgtgatgtgttcagagctgtaacataagagtaatgtactagagtagttttaaaagacagtgatatggttgtattttgagctatgaagttgtgccaataaatgagtgggttttg</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0169000, RefSeq:Os05g0169000